Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_C14
(953 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic 523 e-148
sp|P17126|ACT_HYDAT Actin, non-muscle 6.2 521 e-147
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 521 e-147
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 520 e-147
sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic 520 e-147
sp|P41113|ACT3_PODCA Actin-3 519 e-147
sp|P92179|ACTC_BIOGL Actin, cytoplasmic 518 e-147
sp|Q964D9|ACTC_HELTI Actin, cytoplasmic 518 e-147
sp|P12716|ACTC_PISOC Actin, cytoplasmic 517 e-146
sp|P53458|ACT5_DIPDE Actin-5 516 e-146
>sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic
Length = 376
Score = 523 bits (1346), Expect = e-148
Identities = 259/286 (90%), Positives = 266/286 (93%)
Frame = +1
Query: 19 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTT 198
FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTT
Sbjct: 91 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 150
Query: 199 GIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 378
GIVLDSGDGVTHTVPIYEGYALPHAI RLDLAGRDLTDYLMKILTERGYSFTTTAEREIV
Sbjct: 151 GIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 210
Query: 379 RDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVITIGNERFRCPETLFQPSFIGL 558
RDIKEKL YVAL F++EMHTA PDGQVITIGNERFRCPE +FQPSF+G+
Sbjct: 211 RDIKEKLCYVALDFEQEMHTAATSSSLEKSYELPDGQVITIGNERFRCPEAVFQPSFLGM 270
Query: 559 ECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEITSLAPPTMKIKI 738
E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMFPGI+DRMQKEIT+LAPPTMKIKI
Sbjct: 271 ESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKI 330
Query: 739 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 876
IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 331 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P17126|ACT_HYDAT Actin, non-muscle 6.2
Length = 376
Score = 521 bits (1342), Expect = e-147
Identities = 259/286 (90%), Positives = 267/286 (93%)
Frame = +1
Query: 19 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTT 198
FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTT
Sbjct: 91 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT 150
Query: 199 GIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 378
GIVLDSGDGV+HTVPIYEGYALPHAI RLDLAGRDLTDYLMKILTERGYSFTTTAEREIV
Sbjct: 151 GIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 210
Query: 379 RDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVITIGNERFRCPETLFQPSFIGL 558
RDIKEKLSYVAL F++EM TA PDGQVITIGNERFRCPETLFQPSFIG+
Sbjct: 211 RDIKEKLSYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGM 270
Query: 559 ECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEITSLAPPTMKIKI 738
E AGIHETTYNSIMKCDVDIRKDLYAN VLSGG+TMFPGI+DRMQKEI++LAPPTMKIKI
Sbjct: 271 ESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEISALAPPTMKIKI 330
Query: 739 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 876
IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 331 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 521 bits (1342), Expect = e-147
Identities = 259/286 (90%), Positives = 265/286 (92%)
Frame = +1
Query: 19 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTT 198
FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTT
Sbjct: 91 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 150
Query: 199 GIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 378
GIVLDSGDGVTHTVPIYEGYALPHAI RLDLAGRDLTDYLMKILTERGYSFTTTAEREIV
Sbjct: 151 GIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 210
Query: 379 RDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVITIGNERFRCPETLFQPSFIGL 558
RDIKEKL YVAL F++EM TA PDGQVITIGNERFRCPE LFQPSF+G+
Sbjct: 211 RDIKEKLCYVALDFEQEMQTATSSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 270
Query: 559 ECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEITSLAPPTMKIKI 738
E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMFPGI+DRMQKEIT+LAPPTMKIKI
Sbjct: 271 EAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKI 330
Query: 739 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 876
IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 331 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 520 bits (1340), Expect = e-147
Identities = 258/286 (90%), Positives = 265/286 (92%)
Frame = +1
Query: 19 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTT 198
FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTT
Sbjct: 91 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 150
Query: 199 GIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 378
GIVLDSGDGVTHTVPIYEGYALPHAI RLDLAGRDLTDYLMKILTERGYSFTTTAEREIV
Sbjct: 151 GIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 210
Query: 379 RDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVITIGNERFRCPETLFQPSFIGL 558
RDIKEKL YVAL F++EM TA PDGQVITIGNERFRCPE +FQPSF+G+
Sbjct: 211 RDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGM 270
Query: 559 ECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEITSLAPPTMKIKI 738
E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMFPGI+DRMQKEIT+LAPPTMKIKI
Sbjct: 271 EAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKI 330
Query: 739 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 876
IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 331 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic
Length = 376
Score = 520 bits (1338), Expect = e-147
Identities = 257/286 (89%), Positives = 265/286 (92%)
Frame = +1
Query: 19 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTT 198
FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTT
Sbjct: 91 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 150
Query: 199 GIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 378
GIV+DSGDGVTHTVPIYEGYALPHAI RLDLAGRDLTDYLMKILTERGYSFTTTAEREIV
Sbjct: 151 GIVMDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 210
Query: 379 RDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVITIGNERFRCPETLFQPSFIGL 558
RDIKEKL YVAL F++EM TA PDGQVITIGNERFRCPE +FQPSF+G+
Sbjct: 211 RDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGM 270
Query: 559 ECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEITSLAPPTMKIKI 738
E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMFPGI+DRMQKEIT+LAPPTMKIKI
Sbjct: 271 EAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKI 330
Query: 739 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 876
IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 331 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P41113|ACT3_PODCA Actin-3
Length = 376
Score = 519 bits (1337), Expect = e-147
Identities = 257/286 (89%), Positives = 267/286 (93%)
Frame = +1
Query: 19 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTT 198
FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTT
Sbjct: 91 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT 150
Query: 199 GIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 378
GIVLDSGDGV+HTVPIYEGYALPHAI RLDLAGRDLTDY+MKILTERGYSFTTTAEREIV
Sbjct: 151 GIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYMMKILTERGYSFTTTAEREIV 210
Query: 379 RDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVITIGNERFRCPETLFQPSFIGL 558
RDIKEKL+YVAL F++EM TA PDGQVITIGNERFRCPETLFQP+FIG+
Sbjct: 211 RDIKEKLAYVALDFEQEMQTAVTSSSLEKSYELPDGQVITIGNERFRCPETLFQPAFIGM 270
Query: 559 ECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEITSLAPPTMKIKI 738
E AGIHETTYNSIMKCDVDIRKDLYAN VLSGG+TMFPGI+DRMQKEI+SLAPPTMKIKI
Sbjct: 271 ESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEISSLAPPTMKIKI 330
Query: 739 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 876
IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 331 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P92179|ACTC_BIOGL Actin, cytoplasmic
Length = 376
Score = 518 bits (1335), Expect = e-147
Identities = 257/286 (89%), Positives = 264/286 (92%)
Frame = +1
Query: 19 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTT 198
FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTT
Sbjct: 91 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 150
Query: 199 GIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 378
GIV+DSGDGVTHTVPIYEGYALPHAI RLDLAGRDLTDYLMKILTERGYSFTTTAEREIV
Sbjct: 151 GIVMDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 210
Query: 379 RDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVITIGNERFRCPETLFQPSFIGL 558
RDIKEKL YVAL F++EM TA PDGQVITIGNERFRCPE FQPSF+G+
Sbjct: 211 RDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRCPEATFQPSFLGM 270
Query: 559 ECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEITSLAPPTMKIKI 738
E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMFPGI+DRMQKEIT+LAPPTMKIKI
Sbjct: 271 EAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKI 330
Query: 739 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 876
IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 331 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964D9|ACTC_HELTI Actin, cytoplasmic
Length = 376
Score = 518 bits (1334), Expect = e-147
Identities = 256/286 (89%), Positives = 265/286 (92%)
Frame = +1
Query: 19 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTT 198
FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTT
Sbjct: 91 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 150
Query: 199 GIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 378
GIV+DSGDGVTHTVPIYEGYALPHAI RLDLAGRDLTDYLMKILTERGYSFTTTAEREIV
Sbjct: 151 GIVIDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 210
Query: 379 RDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVITIGNERFRCPETLFQPSFIGL 558
RDIKEKL YVAL F++EM TA PDGQVITIGNERFRCPE ++QPSF+G+
Sbjct: 211 RDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRCPEAMYQPSFLGM 270
Query: 559 ECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEITSLAPPTMKIKI 738
E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMFPGI+DRMQKEIT+LAPPTMKIKI
Sbjct: 271 ESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKI 330
Query: 739 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 876
IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 331 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P12716|ACTC_PISOC Actin, cytoplasmic
Length = 376
Score = 517 bits (1332), Expect = e-146
Identities = 256/286 (89%), Positives = 264/286 (92%)
Frame = +1
Query: 19 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTT 198
FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTT
Sbjct: 91 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 150
Query: 199 GIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 378
GIV DSGDGV+HTVPIYEGYALPHAI RLDLAGRDLTDYLMKILTERGYSFTTTAEREIV
Sbjct: 151 GIVFDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 210
Query: 379 RDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVITIGNERFRCPETLFQPSFIGL 558
RDIKEKL YVAL F++EM TA PDGQVITIGNERFRCPE LFQPSF+G+
Sbjct: 211 RDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 270
Query: 559 ECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEITSLAPPTMKIKI 738
E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMFPGI+DRMQKE+T+LAPPTMKIKI
Sbjct: 271 ESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEVTALAPPTMKIKI 330
Query: 739 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 876
IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 331 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P53458|ACT5_DIPDE Actin-5
Length = 371
Score = 516 bits (1328), Expect = e-146
Identities = 256/286 (89%), Positives = 264/286 (92%)
Frame = +1
Query: 19 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTT 198
FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTT
Sbjct: 86 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT 145
Query: 199 GIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 378
GIVLDSGDGVTHTVPIYEGYALPHAI RLDLAGRDLTDYLMKILTERGYSFTTTAEREIV
Sbjct: 146 GIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 205
Query: 379 RDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVITIGNERFRCPETLFQPSFIGL 558
RDIKEKL YVAL F++EM A PDGQVITIGNERFRCPE LFQPSF+G+
Sbjct: 206 RDIKEKLCYVALDFEQEMSNAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 265
Query: 559 ECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEITSLAPPTMKIKI 738
E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGISDRMQKEI++LAP TMKIKI
Sbjct: 266 ESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGISDRMQKEISALAPSTMKIKI 325
Query: 739 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 876
+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF
Sbjct: 326 VAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 371
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,777,271
Number of Sequences: 369166
Number of extensions: 2076750
Number of successful extensions: 5654
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5494
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 9856975370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)