Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_006_C13 (996 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotei... 72 2e-12 sp|Q08473|SQD_DROME RNA-binding protein squid (Heterogeneou... 66 1e-10 sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprote... 65 4e-10 sp|P17132|HNRPC_RAT Heterogeneous nuclear ribonucleoprotein... 65 4e-10 sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein... 65 4e-10 sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprote... 65 4e-10 sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotei... 64 5e-10 sp|P07029|HNRU2_HUMAN Heterogeneous nuclear ribonucleoprote... 63 1e-09 sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoprotei... 55 3e-07 sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotei... 54 5e-07
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B) (CArG-binding factor-A) (CBF-A) Length = 285 Score = 72.4 bits (176), Expect = 2e-12 Identities = 31/67 (46%), Positives = 46/67 (68%) Frame = +1 Query: 52 FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231 FVGGL+P+ TEE+I+EYF Q+G +E+++LP D KR+ +VF++F ED K + + Sbjct: 162 FVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKF 221 Query: 232 QDVLGSK 252 V GSK Sbjct: 222 HTVSGSK 228
Score = 43.5 bits (101), Expect = 0.001 Identities = 19/68 (27%), Positives = 42/68 (61%) Frame = +1 Query: 52 FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231 FVGGLS D +++ +K+YF+++G V + D + G+ + + F+ F + ++ ++++K Sbjct: 78 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF-KDSSSVEKVLDQK 136 Query: 232 QDVLGSKV 255 + L +V Sbjct: 137 EHRLDGRV 144
>sp|Q08473|SQD_DROME RNA-binding protein squid (Heterogeneous nuclear ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 66.2 bits (160), Expect = 1e-10 Identities = 26/69 (37%), Positives = 47/69 (68%) Frame = +1 Query: 52 FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231 FVGGL+ ++++E+IK YF Q+G++ V++PFD K +RK + F++F +E + + K Sbjct: 139 FVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPK 198 Query: 232 QDVLGSKVN 258 Q + G +V+ Sbjct: 199 QKIAGKEVD 207
Score = 52.0 bits (123), Expect = 3e-06 Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 6/67 (8%) Frame = +1 Query: 52 FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTED------AAKN 213 FVGGLS + TE++++++F +YG +ES+++ D G+ + + F+ FT + AA Sbjct: 59 FVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADE 118 Query: 214 AIINEKQ 234 IIN K+ Sbjct: 119 HIINSKK 125
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich element RNA-binding protein 1) Length = 355 Score = 64.7 bits (156), Expect = 4e-10 Identities = 30/67 (44%), Positives = 43/67 (64%) Frame = +1 Query: 52 FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231 FVGGLSPD EE+I+EYF +G VES++LP D KR+ + F++F E+ K + + Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 244 Query: 232 QDVLGSK 252 +V SK Sbjct: 245 HNVGLSK 251
Score = 47.4 bits (111), Expect = 6e-05 Identities = 23/68 (33%), Positives = 41/68 (60%) Frame = +1 Query: 52 FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231 F+GGLS D T++ +K+YFS++G V L D G+ + + F+ F E + + ++++K Sbjct: 100 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMDQK 158 Query: 232 QDVLGSKV 255 + L KV Sbjct: 159 EHKLNGKV 166
>sp|P17132|HNRPC_RAT Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP core protein C) Length = 158 Score = 64.7 bits (156), Expect = 4e-10 Identities = 30/67 (44%), Positives = 43/67 (64%) Frame = +1 Query: 52 FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231 FVGGLSPD EE+I+EYF +G VES++LP D KR+ + F++F E+ K + + Sbjct: 37 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 96 Query: 232 QDVLGSK 252 +V SK Sbjct: 97 HNVGLSK 103
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich element RNA-binding protein 1) Length = 353 Score = 64.7 bits (156), Expect = 4e-10 Identities = 30/67 (44%), Positives = 43/67 (64%) Frame = +1 Query: 52 FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231 FVGGLSPD EE+I+EYF +G VES++LP D KR+ + F++F E+ K + + Sbjct: 183 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 242 Query: 232 QDVLGSK 252 +V SK Sbjct: 243 HNVGLSK 249
Score = 47.4 bits (111), Expect = 6e-05 Identities = 23/68 (33%), Positives = 41/68 (60%) Frame = +1 Query: 52 FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231 F+GGLS D T++ +K+YFS++G V L D G+ + + F+ F E + + ++++K Sbjct: 98 FIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMDQK 156 Query: 232 QDVLGSKV 255 + L KV Sbjct: 157 EHKLNGKV 164
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich element RNA-binding protein 1) Length = 355 Score = 64.7 bits (156), Expect = 4e-10 Identities = 30/67 (44%), Positives = 43/67 (64%) Frame = +1 Query: 52 FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231 FVGGLSPD EE+I+EYF +G VES++LP D KR+ + F++F E+ K + + Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 244 Query: 232 QDVLGSK 252 +V SK Sbjct: 245 HNVGLSK 251
Score = 47.4 bits (111), Expect = 6e-05 Identities = 23/68 (33%), Positives = 41/68 (60%) Frame = +1 Query: 52 FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231 F+GGLS D T++ +K+YFS++G V L D G+ + + F+ F E + + ++++K Sbjct: 100 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMDQK 158 Query: 232 QDVLGSKV 255 + L KV Sbjct: 159 EHKLNGKV 166
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B) (APOBEC-1 binding protein 1) (ABBP-1) Length = 331 Score = 64.3 bits (155), Expect = 5e-10 Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 1/68 (1%) Frame = +1 Query: 52 FVGGLSPDV-TEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINE 228 FVGGL+P+ TEE+I+EYF ++G +E+++LP D KR+ +VF++F E+ K + + Sbjct: 155 FVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKK 214 Query: 229 KQDVLGSK 252 V GSK Sbjct: 215 FHTVSGSK 222
Score = 43.9 bits (102), Expect = 7e-04 Identities = 20/68 (29%), Positives = 42/68 (61%) Frame = +1 Query: 52 FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231 FVGGLS D +++ +K+YF+++G V + D + G+ + + F+ F + A+ ++++K Sbjct: 71 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF-KDAASVEKVLDQK 129 Query: 232 QDVLGSKV 255 + L +V Sbjct: 130 EHRLDGRV 137
>sp|P07029|HNRU2_HUMAN Heterogeneous nuclear ribonucleoprotein UP2 Length = 225 Score = 62.8 bits (151), Expect = 1e-09 Identities = 26/50 (52%), Positives = 36/50 (72%) Frame = +1 Query: 52 FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTED 201 FVGGLSPD EE+I+EYF +G VES++LP D KR+ + F++F E+ Sbjct: 175 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFNQEE 224
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 55.1 bits (131), Expect = 3e-07 Identities = 21/63 (33%), Positives = 37/63 (58%) Frame = +1 Query: 52 FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231 FVGG+ D E+ ++EYF QYG +E +++ D GK++ + F++F D+ +I + Sbjct: 108 FVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKY 167 Query: 232 QDV 240 V Sbjct: 168 HTV 170
Score = 37.7 bits (86), Expect = 0.051 Identities = 18/68 (26%), Positives = 37/68 (54%) Frame = +1 Query: 52 FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231 F+GGLS + T+E ++E+F Q+G++ + D + + + + F+++ + D A+ Sbjct: 17 FIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTARP 76 Query: 232 QDVLGSKV 255 V G V Sbjct: 77 HKVDGRVV 84
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) Length = 195 Score = 54.3 bits (129), Expect = 5e-07 Identities = 21/65 (32%), Positives = 37/65 (56%) Frame = +1 Query: 52 FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231 FVGG+ D E +++YF QYG +E +++ D GK++ + F++F D+ +I + Sbjct: 107 FVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY 166 Query: 232 QDVLG 246 V G Sbjct: 167 HTVNG 171
Score = 37.0 bits (84), Expect = 0.087 Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 3/58 (5%) Frame = +1 Query: 52 FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTT---EDAAKNA 216 F+GGLS + T+E ++ +F Q+G++ + D + + + + F+++ T DAA NA Sbjct: 16 FIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,007,321 Number of Sequences: 369166 Number of extensions: 1917733 Number of successful extensions: 4684 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4438 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4683 length of database: 68,354,980 effective HSP length: 111 effective length of database: 47,849,395 effective search space used: 10526866900 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)