Planarian EST Database


Dr_sW_006_C13

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_006_C13
         (996 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99020|ROAA_MOUSE  Heterogeneous nuclear ribonucleoprotei...    72   2e-12
sp|Q08473|SQD_DROME  RNA-binding protein squid (Heterogeneou...    66   1e-10
sp|Q14103|HNRPD_HUMAN  Heterogeneous nuclear ribonucleoprote...    65   4e-10
sp|P17132|HNRPC_RAT  Heterogeneous nuclear ribonucleoprotein...    65   4e-10
sp|Q9JJ54|HNRPD_RAT  Heterogeneous nuclear ribonucleoprotein...    65   4e-10
sp|Q60668|HNRPD_MOUSE  Heterogeneous nuclear ribonucleoprote...    65   4e-10
sp|Q99729|ROAA_HUMAN  Heterogeneous nuclear ribonucleoprotei...    64   5e-10
sp|P07029|HNRU2_HUMAN  Heterogeneous nuclear ribonucleoprote...    63   1e-09
sp|P17130|ROA1_XENLA  Heterogeneous nuclear ribonucleoprotei...    55   3e-07
sp|P09867|ROA1_BOVIN  Heterogeneous nuclear ribonucleoprotei...    54   5e-07
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 72.4 bits (176), Expect = 2e-12
 Identities = 31/67 (46%), Positives = 46/67 (68%)
 Frame = +1

Query: 52  FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231
           FVGGL+P+ TEE+I+EYF Q+G +E+++LP D    KR+ +VF++F  ED  K  +  + 
Sbjct: 162 FVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKF 221

Query: 232 QDVLGSK 252
             V GSK
Sbjct: 222 HTVSGSK 228

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 19/68 (27%), Positives = 42/68 (61%)
 Frame = +1

Query: 52  FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231
           FVGGLS D +++ +K+YF+++G V    +  D + G+ + + F+ F  + ++   ++++K
Sbjct: 78  FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF-KDSSSVEKVLDQK 136

Query: 232 QDVLGSKV 255
           +  L  +V
Sbjct: 137 EHRLDGRV 144
>sp|Q08473|SQD_DROME RNA-binding protein squid (Heterogeneous nuclear ribonucleoprotein
           40) (HNRNP 40)
          Length = 344

 Score = 66.2 bits (160), Expect = 1e-10
 Identities = 26/69 (37%), Positives = 47/69 (68%)
 Frame = +1

Query: 52  FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231
           FVGGL+ ++++E+IK YF Q+G++  V++PFD  K +RK + F++F +E    + +   K
Sbjct: 139 FVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPK 198

Query: 232 QDVLGSKVN 258
           Q + G +V+
Sbjct: 199 QKIAGKEVD 207

 Score = 52.0 bits (123), Expect = 3e-06
 Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
 Frame = +1

Query: 52  FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTED------AAKN 213
           FVGGLS + TE++++++F +YG +ES+++  D   G+ + + F+ FT  +      AA  
Sbjct: 59  FVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADE 118

Query: 214 AIINEKQ 234
            IIN K+
Sbjct: 119 HIINSKK 125
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
           element RNA-binding protein 1)
          Length = 355

 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 30/67 (44%), Positives = 43/67 (64%)
 Frame = +1

Query: 52  FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231
           FVGGLSPD  EE+I+EYF  +G VES++LP D    KR+ + F++F  E+  K  +  + 
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 244

Query: 232 QDVLGSK 252
            +V  SK
Sbjct: 245 HNVGLSK 251

 Score = 47.4 bits (111), Expect = 6e-05
 Identities = 23/68 (33%), Positives = 41/68 (60%)
 Frame = +1

Query: 52  FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231
           F+GGLS D T++ +K+YFS++G V    L  D   G+ + + F+ F  E  + + ++++K
Sbjct: 100 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMDQK 158

Query: 232 QDVLGSKV 255
           +  L  KV
Sbjct: 159 EHKLNGKV 166
>sp|P17132|HNRPC_RAT Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP core
           protein C)
          Length = 158

 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 30/67 (44%), Positives = 43/67 (64%)
 Frame = +1

Query: 52  FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231
           FVGGLSPD  EE+I+EYF  +G VES++LP D    KR+ + F++F  E+  K  +  + 
Sbjct: 37  FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 96

Query: 232 QDVLGSK 252
            +V  SK
Sbjct: 97  HNVGLSK 103
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
           element RNA-binding protein 1)
          Length = 353

 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 30/67 (44%), Positives = 43/67 (64%)
 Frame = +1

Query: 52  FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231
           FVGGLSPD  EE+I+EYF  +G VES++LP D    KR+ + F++F  E+  K  +  + 
Sbjct: 183 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 242

Query: 232 QDVLGSK 252
            +V  SK
Sbjct: 243 HNVGLSK 249

 Score = 47.4 bits (111), Expect = 6e-05
 Identities = 23/68 (33%), Positives = 41/68 (60%)
 Frame = +1

Query: 52  FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231
           F+GGLS D T++ +K+YFS++G V    L  D   G+ + + F+ F  E  + + ++++K
Sbjct: 98  FIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMDQK 156

Query: 232 QDVLGSKV 255
           +  L  KV
Sbjct: 157 EHKLNGKV 164
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
           element RNA-binding protein 1)
          Length = 355

 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 30/67 (44%), Positives = 43/67 (64%)
 Frame = +1

Query: 52  FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231
           FVGGLSPD  EE+I+EYF  +G VES++LP D    KR+ + F++F  E+  K  +  + 
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 244

Query: 232 QDVLGSK 252
            +V  SK
Sbjct: 245 HNVGLSK 251

 Score = 47.4 bits (111), Expect = 6e-05
 Identities = 23/68 (33%), Positives = 41/68 (60%)
 Frame = +1

Query: 52  FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231
           F+GGLS D T++ +K+YFS++G V    L  D   G+ + + F+ F  E  + + ++++K
Sbjct: 100 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMDQK 158

Query: 232 QDVLGSKV 255
           +  L  KV
Sbjct: 159 EHKLNGKV 166
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B) (APOBEC-1
           binding protein 1) (ABBP-1)
          Length = 331

 Score = 64.3 bits (155), Expect = 5e-10
 Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
 Frame = +1

Query: 52  FVGGLSPDV-TEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINE 228
           FVGGL+P+  TEE+I+EYF ++G +E+++LP D    KR+ +VF++F  E+  K  +  +
Sbjct: 155 FVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKK 214

Query: 229 KQDVLGSK 252
              V GSK
Sbjct: 215 FHTVSGSK 222

 Score = 43.9 bits (102), Expect = 7e-04
 Identities = 20/68 (29%), Positives = 42/68 (61%)
 Frame = +1

Query: 52  FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231
           FVGGLS D +++ +K+YF+++G V    +  D + G+ + + F+ F  + A+   ++++K
Sbjct: 71  FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF-KDAASVEKVLDQK 129

Query: 232 QDVLGSKV 255
           +  L  +V
Sbjct: 130 EHRLDGRV 137
>sp|P07029|HNRU2_HUMAN Heterogeneous nuclear ribonucleoprotein UP2
          Length = 225

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 26/50 (52%), Positives = 36/50 (72%)
 Frame = +1

Query: 52  FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTED 201
           FVGGLSPD  EE+I+EYF  +G VES++LP D    KR+ + F++F  E+
Sbjct: 175 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFNQEE 224
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP A1)
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score = 55.1 bits (131), Expect = 3e-07
 Identities = 21/63 (33%), Positives = 37/63 (58%)
 Frame = +1

Query: 52  FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231
           FVGG+  D  E+ ++EYF QYG +E +++  D   GK++ + F++F   D+    +I + 
Sbjct: 108 FVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKY 167

Query: 232 QDV 240
             V
Sbjct: 168 HTV 170

 Score = 37.7 bits (86), Expect = 0.051
 Identities = 18/68 (26%), Positives = 37/68 (54%)
 Frame = +1

Query: 52  FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231
           F+GGLS + T+E ++E+F Q+G++    +  D +  + + + F+++ + D    A+    
Sbjct: 17  FIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTARP 76

Query: 232 QDVLGSKV 255
             V G  V
Sbjct: 77  HKVDGRVV 84
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
           protein) (Single-strand binding protein) (hnRNP core
           protein A1) (Unwinding protein 1) (UP1)
          Length = 195

 Score = 54.3 bits (129), Expect = 5e-07
 Identities = 21/65 (32%), Positives = 37/65 (56%)
 Frame = +1

Query: 52  FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEK 231
           FVGG+  D  E  +++YF QYG +E +++  D   GK++ + F++F   D+    +I + 
Sbjct: 107 FVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY 166

Query: 232 QDVLG 246
             V G
Sbjct: 167 HTVNG 171

 Score = 37.0 bits (84), Expect = 0.087
 Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
 Frame = +1

Query: 52  FVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTT---EDAAKNA 216
           F+GGLS + T+E ++ +F Q+G++    +  D +  + + + F+++ T    DAA NA
Sbjct: 16  FIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,007,321
Number of Sequences: 369166
Number of extensions: 1917733
Number of successful extensions: 4684
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4683
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10526866900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)