Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_C09
(291 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0 55 6e-08
sp|O24573|RLA0_MAIZE 60S acidic ribosomal protein P0 53 2e-07
sp|O04204|RLA0A_ARATH 60S acidic ribosomal protein P0-A 52 4e-07
sp|P57691|RLA0C_ARATH 60S acidic ribosomal protein P0-C 51 9e-07
sp|Q42112|RLA0B_ARATH 60S acidic ribosomal protein P0-B 51 9e-07
sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0 50 2e-06
sp|P41095|RLA0_ORYSA 60S acidic ribosomal protein P0 49 3e-06
sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(... 49 3e-06
sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E) 49 5e-06
sp|P50345|RLA0_LUPLU 60S acidic ribosomal protein P0 48 6e-06
>sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0
Length = 320
Score = 54.7 bits (130), Expect = 6e-08
Identities = 24/50 (48%), Positives = 34/50 (68%)
Frame = +1
Query: 1 SCRIRHEALASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 150
S I + LA+ PH+ N K V+ ++V TDY+ EA+ +KEYLKDP+KF
Sbjct: 229 SLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKF 278
>sp|O24573|RLA0_MAIZE 60S acidic ribosomal protein P0
Length = 319
Score = 53.1 bits (126), Expect = 2e-07
Identities = 25/50 (50%), Positives = 34/50 (68%)
Frame = +1
Query: 1 SCRIRHEALASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 150
S I + LA+VPH+ N K V+ ++V TDY+ A+ IKEYLKDP+KF
Sbjct: 229 SLAISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKF 278
>sp|O04204|RLA0A_ARATH 60S acidic ribosomal protein P0-A
Length = 317
Score = 52.0 bits (123), Expect = 4e-07
Identities = 21/50 (42%), Positives = 34/50 (68%)
Frame = +1
Query: 1 SCRIRHEALASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 150
S I + +A+ PH+ N K V+ +++ T+Y+ +AE +KE+LKDPTKF
Sbjct: 229 SLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF 278
>sp|P57691|RLA0C_ARATH 60S acidic ribosomal protein P0-C
Length = 323
Score = 50.8 bits (120), Expect = 9e-07
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +1
Query: 10 IRHEALASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 150
+ + LA+ PH+ N K + ++V TDY +AE +KE+LKDP+KF
Sbjct: 231 VSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277
>sp|Q42112|RLA0B_ARATH 60S acidic ribosomal protein P0-B
Length = 320
Score = 50.8 bits (120), Expect = 9e-07
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +1
Query: 10 IRHEALASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 150
+ + LA+ PH+ N K + ++V T+Y +AE +KEYLKDP+KF
Sbjct: 231 VSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277
>sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0
Length = 312
Score = 50.1 bits (118), Expect = 2e-06
Identities = 22/50 (44%), Positives = 35/50 (70%)
Frame = +1
Query: 1 SCRIRHEALASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 150
S + + LASV H +AN ++ ++G++ VTD + KEAE IK ++ DP+KF
Sbjct: 226 SLAVNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF 275
>sp|P41095|RLA0_ORYSA 60S acidic ribosomal protein P0
Length = 319
Score = 49.3 bits (116), Expect = 3e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +1
Query: 1 SCRIRHEALASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 150
S I + +A+ PH+ N K V+ ++V T+Y+ A+ IKEYLKDP+KF
Sbjct: 229 SLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKF 278
>sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic
site) lyase) (Apurinic-apyrimidinic endonuclease)
Length = 317
Score = 49.3 bits (116), Expect = 3e-06
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = +1
Query: 10 IRHEALASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 150
+ + +AS PH IAN K ++ ++ T+ KEA IKEY+KDP+KF
Sbjct: 229 VGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKF 275
>sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E)
Length = 319
Score = 48.5 bits (114), Expect = 5e-06
Identities = 23/48 (47%), Positives = 30/48 (62%)
Frame = +1
Query: 7 RIRHEALASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 150
+I + LAS+PH I N K V+ ++V TDY AE +K YL DPT F
Sbjct: 231 QIGYPTLASIPHTIINGYKRVLAVTVETDYTFPLAEKVKAYLADPTAF 278
>sp|P50345|RLA0_LUPLU 60S acidic ribosomal protein P0
Length = 322
Score = 48.1 bits (113), Expect = 6e-06
Identities = 18/41 (43%), Positives = 30/41 (73%)
Frame = +1
Query: 28 ASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 150
++ PH+ N K V+ ++V T+Y+ +A+ +KEYLKDP+KF
Sbjct: 238 SAAPHVFINAYKNVLAVAVATEYSFPQADEVKEYLKDPSKF 278
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,668,250
Number of Sequences: 369166
Number of extensions: 292669
Number of successful extensions: 896
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 68,354,980
effective HSP length: 66
effective length of database: 56,162,470
effective search space used: 1684874100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)