Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_C08
(672 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O61231|RL10_DROME 60S ribosomal protein L10 (QM protein ... 320 2e-87
sp|O96647|RL10_BOMMA 60S ribosomal protein L10 (QM protein ... 318 1e-86
sp|Q9XSI3|RL10_BOVIN 60S ribosomal protein L10 (QM protein ... 316 4e-86
sp|P27635|RL10_HUMAN 60S ribosomal protein L10 (QM protein)... 315 7e-86
sp|Q6ZWV3|RL10_MOUSE 60S ribosomal protein L10 (QM protein ... 315 7e-86
sp|Q08200|RL10_CHICK 60S ribosomal protein L10 (Jun-binding... 315 9e-86
sp|Q5R931|RL10_PONPY 60S ribosomal protein L10 314 2e-85
sp|Q09533|RL10_CAEEL 60S ribosomal protein L10 (QM protein ... 313 2e-85
sp|Q96L21|RL10L_HUMAN 60S ribosomal protein L10-like 306 2e-83
sp|Q9P769|RL10B_SCHPO 60S ribosomal protein L10-B 283 3e-76
>sp|O61231|RL10_DROME 60S ribosomal protein L10 (QM protein homolog) (dQM)
Length = 218
Score = 320 bits (821), Expect = 2e-87
Identities = 149/204 (73%), Positives = 168/204 (82%)
Frame = +1
Query: 1 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKADCDEFPACVHMLSDEIEQLSSEALEA 180
CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKA ++FP CVH++SDE EQLSSEALEA
Sbjct: 8 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQLSSEALEA 67
Query: 181 ARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVA 360
RIC NKYLVK CGKD FH+R+R HP+HV RINKMLSCAGADRLQTGMRGA+GKPQG VA
Sbjct: 68 GRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 127
Query: 361 RVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEEYERLRKD 540
RV+IGQPI SVR + ++EA RRAK KFPGRQKI +S K+GFTK+ +E YE LR D
Sbjct: 128 RVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRDD 187
Query: 541 GTLYPDGVNVKYLPKKGSLELWKK 612
L PDG NVKY P+ G + W+K
Sbjct: 188 NRLEPDGCNVKYRPEHGPIAAWEK 211
>sp|O96647|RL10_BOMMA 60S ribosomal protein L10 (QM protein homolog)
Length = 219
Score = 318 bits (814), Expect = 1e-86
Identities = 146/209 (69%), Positives = 176/209 (84%)
Frame = +1
Query: 1 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKADCDEFPACVHMLSDEIEQLSSEALEA 180
CYRYCKNKPYPKSRFCRGVPDPKIRIFDLG+K+A+ D+FP CVH++SDE EQLSSEALEA
Sbjct: 8 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 67
Query: 181 ARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVA 360
RIC NKYLVK+CGKD FH+R+R HP+HV RINKMLSCAGADRLQTGMRGA+GKPQG VA
Sbjct: 68 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 127
Query: 361 RVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEEYERLRKD 540
RV+IGQPI SVR + ++EA RRAK KFPGRQKI +S K+GFTK+ ++E+E+LR++
Sbjct: 128 RVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREE 187
Query: 541 GTLYPDGVNVKYLPKKGSLELWKKHKAHL 627
G L DG V+Y P+ G L+ W+K +A +
Sbjct: 188 GRLANDGCIVQYRPEHGPLDAWRKVQAEI 216
>sp|Q9XSI3|RL10_BOVIN 60S ribosomal protein L10 (QM protein homolog)
Length = 214
Score = 316 bits (809), Expect = 4e-86
Identities = 149/203 (73%), Positives = 168/203 (82%)
Frame = +1
Query: 1 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKADCDEFPACVHMLSDEIEQLSSEALEA 180
CYRYCKNKPYPKSRFCRGVPD KIRIFDLGRKKA DEFP C HM+SDE EQLSSEALEA
Sbjct: 8 CYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEA 67
Query: 181 ARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVA 360
ARICANKY+VKSCGKD FH+RVR HP+HV RINKMLSCAGADRLQTGMRGA+GKPQG VA
Sbjct: 68 ARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 127
Query: 361 RVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEEYERLRKD 540
RV IGQ I S+R K N +++EA RRAK KFPGRQKI IS K+GFTK+ +E+E + +
Sbjct: 128 RVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAE 187
Query: 541 GTLYPDGVNVKYLPKKGSLELWK 609
L PDG VKY+P +G L+ W+
Sbjct: 188 KRLIPDGCGVKYIPNRGPLDKWR 210
>sp|P27635|RL10_HUMAN 60S ribosomal protein L10 (QM protein) (Tumor suppressor QM)
(Laminin receptor homolog)
Length = 214
Score = 315 bits (807), Expect = 7e-86
Identities = 149/203 (73%), Positives = 168/203 (82%)
Frame = +1
Query: 1 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKADCDEFPACVHMLSDEIEQLSSEALEA 180
CYRYCKNKPYPKSRFCRGVPD KIRIFDLGRKKA DEFP C HM+SDE EQLSSEALEA
Sbjct: 8 CYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEA 67
Query: 181 ARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVA 360
ARICANKY+VKSCGKD FH+RVR HP+HV RINKMLSCAGADRLQTGMRGA+GKPQG VA
Sbjct: 68 ARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 127
Query: 361 RVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEEYERLRKD 540
RV IGQ I S+R K N +++EA RRAK KFPGRQKI IS K+GFTK+ +E+E + +
Sbjct: 128 RVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAE 187
Query: 541 GTLYPDGVNVKYLPKKGSLELWK 609
L PDG VKY+P +G L+ W+
Sbjct: 188 KRLIPDGCGVKYIPSRGPLDKWR 210
>sp|Q6ZWV3|RL10_MOUSE 60S ribosomal protein L10 (QM protein homolog)
sp|Q6PDV7|RL10_RAT 60S ribosomal protein L10
Length = 214
Score = 315 bits (807), Expect = 7e-86
Identities = 149/203 (73%), Positives = 168/203 (82%)
Frame = +1
Query: 1 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKADCDEFPACVHMLSDEIEQLSSEALEA 180
CYRYCKNKPYPKSRFCRGVPD KIRIFDLGRKKA DEFP C HM+SDE EQLSSEALEA
Sbjct: 8 CYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEA 67
Query: 181 ARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVA 360
ARICANKY+VKSCGKD FH+RVR HP+HV RINKMLSCAGADRLQTGMRGA+GKPQG VA
Sbjct: 68 ARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 127
Query: 361 RVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEEYERLRKD 540
RV IGQ I S+R K N +++EA RRAK KFPGRQKI IS K+GFTK+ +E+E + +
Sbjct: 128 RVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAE 187
Query: 541 GTLYPDGVNVKYLPKKGSLELWK 609
L PDG VKY+P +G L+ W+
Sbjct: 188 KRLIPDGCGVKYIPNRGPLDKWR 210
>sp|Q08200|RL10_CHICK 60S ribosomal protein L10 (Jun-binding protein JIF-1)
Length = 210
Score = 315 bits (806), Expect = 9e-86
Identities = 149/203 (73%), Positives = 167/203 (82%)
Frame = +1
Query: 1 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKADCDEFPACVHMLSDEIEQLSSEALEA 180
CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKA DEFP C HM+SDE EQLSSEALEA
Sbjct: 3 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEA 62
Query: 181 ARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVA 360
ARICANKY+VKSCGKD FH+RVR HP+HV RINKMLSCAGADRLQTGMRGA+GKPQG VA
Sbjct: 63 ARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 122
Query: 361 RVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEEYERLRKD 540
RV +GQ I S+R K N ++VEA RRAK KFPGRQKI IS K+GFTK+ + +E +
Sbjct: 123 RVHMGQVIMSIRTKAQNKEHVVEALRRAKFKFPGRQKIHISKKWGFTKFNADAFEEMVAQ 182
Query: 541 GTLYPDGVNVKYLPKKGSLELWK 609
L PDG VKY+P +G L+ W+
Sbjct: 183 KRLIPDGCGVKYVPGRGPLDRWR 205
>sp|Q5R931|RL10_PONPY 60S ribosomal protein L10
Length = 214
Score = 314 bits (804), Expect = 2e-85
Identities = 149/203 (73%), Positives = 167/203 (82%)
Frame = +1
Query: 1 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKADCDEFPACVHMLSDEIEQLSSEALEA 180
CYRYCKNKPYPKSRFCRGVPD KIRIFDLGRKKA DEFP C HM+SDE EQLSSEALEA
Sbjct: 8 CYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEA 67
Query: 181 ARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVA 360
ARICANKY+VKSCGKD FH+RVR HP+HV RINKMLSCAGADRLQTGMRGA+GKPQG VA
Sbjct: 68 ARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 127
Query: 361 RVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEEYERLRKD 540
RV IGQ I S+R K N +++EA RRAK KFPGRQKI IS K+GFTK+ +E+E + +
Sbjct: 128 RVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAE 187
Query: 541 GTLYPDGVNVKYLPKKGSLELWK 609
L PDG VKY P +G L+ W+
Sbjct: 188 KRLIPDGCGVKYTPNRGPLDKWR 210
>sp|Q09533|RL10_CAEEL 60S ribosomal protein L10 (QM protein homolog)
Length = 214
Score = 313 bits (803), Expect = 2e-85
Identities = 150/202 (74%), Positives = 168/202 (83%)
Frame = +1
Query: 1 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKADCDEFPACVHMLSDEIEQLSSEALEA 180
CYRY KNKPYPKSRFCRGVPD KIRIFDLG K+A+ D FPACVHM+S+E E LSSEALEA
Sbjct: 8 CYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEA 67
Query: 181 ARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVA 360
ARICANKY+VK+CGKD FHLRVR HP+HVTRINKMLSCAGADRLQTGMRGAYGKPQGLVA
Sbjct: 68 ARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVA 127
Query: 361 RVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEEYERLRKD 540
RV IG +FS+R KE NV + +EAFRRAK KFPGRQ I S K+GFTKW +E+YER+R +
Sbjct: 128 RVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAE 187
Query: 541 GTLYPDGVNVKYLPKKGSLELW 606
G L DGV V+ + G L W
Sbjct: 188 GRLRSDGVGVQLQREHGPLTKW 209
>sp|Q96L21|RL10L_HUMAN 60S ribosomal protein L10-like
Length = 214
Score = 306 bits (785), Expect = 2e-83
Identities = 147/203 (72%), Positives = 165/203 (81%)
Frame = +1
Query: 1 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKADCDEFPACVHMLSDEIEQLSSEALEA 180
CYRYCKNKPYPKSRFCRGVPD KIRIFDLGRKKA DEFP HM+SDE EQLSSEALEA
Sbjct: 8 CYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQLSSEALEA 67
Query: 181 ARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVA 360
ARICANKY+VKSCG+D FH+RVR HP+HV RINKMLSCAGADRLQTGMRGA+GKPQG VA
Sbjct: 68 ARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 127
Query: 361 RVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEEYERLRKD 540
RV IGQ I S+R K N +++EA RRAK KFPGRQKI IS K+GFTK+ +E+E +
Sbjct: 128 RVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAK 187
Query: 541 GTLYPDGVNVKYLPKKGSLELWK 609
L PDG VKY+P G L+ W+
Sbjct: 188 KCLIPDGCGVKYVPSHGPLDKWR 210
>sp|Q9P769|RL10B_SCHPO 60S ribosomal protein L10-B
Length = 221
Score = 283 bits (724), Expect = 3e-76
Identities = 133/200 (66%), Positives = 163/200 (81%)
Frame = +1
Query: 1 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKADCDEFPACVHMLSDEIEQLSSEALEA 180
CYRYCKNKPYPKSR+ R VPD KIRIFDLGRK+A DEFP C+H++S+E EQ++SEALEA
Sbjct: 8 CYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEA 67
Query: 181 ARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVA 360
ARICANKYLVK GKD+FHLRVRAHP+HV RINKMLSCAGADRLQTGMR A+GKP GLVA
Sbjct: 68 ARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVA 127
Query: 361 RVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEEYERLRKD 540
RV IGQ + SVR K+++ +EA RR + KFPG+Q+I +S K+GF+++ ++EY R
Sbjct: 128 RVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSR 187
Query: 541 GTLYPDGVNVKYLPKKGSLE 600
G + PDG K+L K+GSL+
Sbjct: 188 GEIIPDGCYAKFLNKRGSLQ 207
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,477,983
Number of Sequences: 369166
Number of extensions: 1532990
Number of successful extensions: 4104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4076
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5636246860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)