Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_C01
(347 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VJB6|CADN2_DROME Putative neural-cadherin 2 precursor ... 47 1e-05
sp|Q53H80|CF166_HUMAN Protein C6orf166 46 2e-05
sp|Q5AD77|SNX4_CANAL Sorting nexin-4 (Autophagy-related pro... 33 0.27
sp|O51063|Y032_BORBU Hypothetical protein BB0032 33 0.27
sp|O60318|MCM3A_HUMAN 80 kda MCM3-associated protein (GANP ... 31 0.77
sp|Q9WUU9|MCM3A_MOUSE 80 kda MCM3-associated protein (GANP ... 31 0.77
sp|P58397|ATS12_HUMAN ADAMTS-12 precursor (A disintegrin an... 31 0.77
sp|P38222|YBO0_YEAST Hypothetical 62.6 kDa protein in CDS1-... 30 1.3
sp|Q8NGG5|OR8K1_HUMAN Olfactory receptor 8K1 30 1.7
sp|P25805|CYSP_PLAFA Trophozoite cysteine proteinase precur... 30 1.7
>sp|Q9VJB6|CADN2_DROME Putative neural-cadherin 2 precursor (Cadherin-N2 protein)
(DN2-cadherin)
Length = 2215
Score = 47.4 bits (111), Expect = 1e-05
Identities = 21/53 (39%), Positives = 33/53 (62%)
Frame = +2
Query: 62 TSENIPKYNLNETTSICNEMIKKMESDLKKEFAICLSEKLSEQYDNFIKFNKD 220
T +N + + +C EM+K+ E + E+ I L++K++EQYD FIKFN D
Sbjct: 121 TEDNRDLFTYQQLKLMCCEMMKQCEDRVVLEYEIALTQKMAEQYDTFIKFNHD 173
>sp|Q53H80|CF166_HUMAN Protein C6orf166
Length = 203
Score = 46.2 bits (108), Expect = 2e-05
Identities = 19/51 (37%), Positives = 32/51 (62%)
Frame = +2
Query: 77 PKYNLNETTSICNEMIKKMESDLKKEFAICLSEKLSEQYDNFIKFNKDWIL 229
P + L + IC ++K+ E +++E+ L+ KL+EQYD F+KF D I+
Sbjct: 141 PLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQYDAFVKFTHDQIM 191
>sp|Q5AD77|SNX4_CANAL Sorting nexin-4 (Autophagy-related protein 24)
Length = 630
Score = 32.7 bits (73), Expect = 0.27
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +2
Query: 44 NINEQLTSENIPKYNLNETTSICNEMIKKMESDLKKEFAIC--LSEKL-SEQYDNFIKFN 214
N QL + + N + +I ++ IK +E ++ KE I L+ K+ +E+Y N+ KFN
Sbjct: 530 NNTTQLIKDTLSTSNTTISNTIKSDKIKNLEQEIAKETKILTDLTNKIINEEYPNWEKFN 589
Query: 215 K 217
K
Sbjct: 590 K 590
>sp|O51063|Y032_BORBU Hypothetical protein BB0032
Length = 490
Score = 32.7 bits (73), Expect = 0.27
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 17/88 (19%)
Frame = +2
Query: 17 VDTIHSTTDNINEQLTSEN---------IPKYNLNETTSICNEMIKKMES---DLK---- 148
V T+ T DN N QL S+N K N N+ I N + ++S LK
Sbjct: 246 VKTLAKTLDNENIQLISKNEKINIKLPGFKKINSNKIEKIQNYELNSLDSKNISLKSTYN 305
Query: 149 -KEFAICLSEKLSEQYDNFIKFNKDWIL 229
KEF I +Y +F+K N W L
Sbjct: 306 VKEFLIQEQNVTKYEYQDFLKENPKWAL 333
>sp|O60318|MCM3A_HUMAN 80 kda MCM3-associated protein (GANP protein)
Length = 1980
Score = 31.2 bits (69), Expect = 0.77
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 92 NETTSICNEMIKKMESDLKKEFAICLSEKLSEQYDNFIKFNKDWILPPV 238
NE + C + +K+M DL+ + C SE + Y+ + NK IL V
Sbjct: 776 NENMTKCLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLSLNKGDILREV 824
>sp|Q9WUU9|MCM3A_MOUSE 80 kda MCM3-associated protein (GANP protein)
Length = 1971
Score = 31.2 bits (69), Expect = 0.77
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 92 NETTSICNEMIKKMESDLKKEFAICLSEKLSEQYDNFIKFNKDWILPPV 238
NE + C + +K+M DL+ + C SE + Y+ + NK IL V
Sbjct: 769 NENMTKCLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLNLNKGDILREV 817
>sp|P58397|ATS12_HUMAN ADAMTS-12 precursor (A disintegrin and metalloproteinase with
thrombospondin motifs 12) (ADAM-TS 12) (ADAM-TS12)
Length = 1593
Score = 31.2 bits (69), Expect = 0.77
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 110 CNEMIKKMESDLKKEFAICLSEKLSEQYDNFIKFNKDWILPPVDADCWYVC 262
CN+ K +DL +C +KLS + +K K +P V A+C + C
Sbjct: 1525 CNQQACKKSADL-----LCTKDKLSASFCQTLKAMKKCSVPTVRAECCFSC 1570
>sp|P38222|YBO0_YEAST Hypothetical 62.6 kDa protein in CDS1-RPL4A intergenic region
Length = 552
Score = 30.4 bits (67), Expect = 1.3
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 68 ENIPKYNLNETTSICNEMIKKMESDLKKEFA 160
+N+PK ET I ++IK +E+DL+KE++
Sbjct: 266 KNMPKVASMETRVIDEDLIKSLENDLEKEYS 296
>sp|Q8NGG5|OR8K1_HUMAN Olfactory receptor 8K1
Length = 319
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/60 (36%), Positives = 28/60 (46%)
Frame = -3
Query: 213 LNLMKLSYCSDNFSLRQIANSFFKSDSIFLIISLQIDVVSLRLYLGIFSLVNCSLILSVV 34
+ L KLS+C N S+F D I L+ L D L L + IFS N LS+V
Sbjct: 167 IKLFKLSFCGSNII------SYFYCDCIPLMSILCSDTNELELIILIFSGCNLLFSLSIV 220
>sp|P25805|CYSP_PLAFA Trophozoite cysteine proteinase precursor (TCP)
Length = 569
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +2
Query: 47 INEQLTSENIPKYNLNETTSICNEMIKKMESDL---KKEFAICLSEKLSEQYDNFIKFNK 217
+NE E+ KY LN T + +++D KKE I L L E+Y FI N
Sbjct: 97 LNESSNEEDEEKYTLNSETYNNKNNVSNIKNDSIKSKKEEYINLERILLEKYKKFINENN 156
Query: 218 D 220
+
Sbjct: 157 E 157
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,987,302
Number of Sequences: 369166
Number of extensions: 575882
Number of successful extensions: 2165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2162
length of database: 68,354,980
effective HSP length: 83
effective length of database: 53,021,975
effective search space used: 1696703200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)