Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_B08
(367 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96PI4|GAK7_HUMAN HERV-K_1q23.3 provirus ancestral Gag p... 31 0.78
sp|Q25145|TPM_HALRU Tropomyosin 31 0.78
sp|P18175|INVO_PIG Involucrin 30 1.7
sp|Q90Z16|OPTN_CHICK Optineurin (Ag9-C5) (FIP-2) 29 3.0
sp|Q9GZ71|TPM_HALDV Tropomyosin 29 3.9
sp|P13713|FLIC_SERMA Flagellin 28 5.1
sp|P34216|YBE7_YEAST Hypothetical 150.8 kDa protein in SEC1... 28 5.1
sp|O97192|TPM_HELAS Tropomyosin (Allergen Hel as 1) 28 5.1
sp|Q9USY7|FZOL_SCHPO Transmembrane GTPase fzo-like protein 28 5.1
sp|Q04996|HAT31_ARATH Homeobox protein HAT3.1 28 5.1
>sp|Q96PI4|GAK7_HUMAN HERV-K_1q23.3 provirus ancestral Gag polyprotein (Gag polyprotein)
(HERV-K18 Gag protein) (HERV-K110 Gag protein)
(HERV-K(C1a) Gag protein) [Contains: Matrix protein]
Length = 253
Score = 31.2 bits (69), Expect = 0.78
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 44 CLEDADKQNQEQSINETDKSQIELTNQPLAA--LQKVLQGQMDSVVLPDNIKSE 199
C+ D +++ +++S ET+ E +PL A Q V Q+ V+ P+ +K E
Sbjct: 108 CIIDCNEKTRKKSQKETETLHCEYVAEPLMAQSTQNVDYNQLQEVIYPETLKLE 161
>sp|Q25145|TPM_HALRU Tropomyosin
Length = 284
Score = 31.2 bits (69), Expect = 0.78
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = +2
Query: 50 EDADKQNQEQS----INETDKSQIELTNQPLAALQKVLQGQMDSVVLPDNIKSESIYKSN 217
EDA+++ E + I E D + E +P AA K+L+ + + V+ +N KS I +
Sbjct: 156 EDAERKYDEAARKLAITEVDLERAEA--RPKAAEAKILELEEELKVVGNNTKSLEISEQE 213
Query: 218 QSEQDFDYESAI 253
S+++ YE I
Sbjct: 214 ASQREDSYEETI 225
>sp|P18175|INVO_PIG Involucrin
Length = 347
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +2
Query: 2 QDGQIHNDKVYHPICLEDADKQNQEQSINETDKSQIELTNQPLAALQKVLQGQMD 166
Q+ ++H D+ + +++ +Q Q+Q + D + E Q A ++ L+GQ++
Sbjct: 258 QEQELHVDQQQQELQVQEVQQQQQQQQEQQEDHQKAEHLEQEEAQREQQLKGQLE 312
>sp|Q90Z16|OPTN_CHICK Optineurin (Ag9-C5) (FIP-2)
Length = 556
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 44 CLEDADKQNQEQSINETDKSQIELTNQPLAALQKVLQ 154
CLE + NQE+ +E S++E + + AL K LQ
Sbjct: 257 CLESGTQTNQEEESSEAIGSEVESLKKQICALFKELQ 293
>sp|Q9GZ71|TPM_HALDV Tropomyosin
Length = 284
Score = 28.9 bits (63), Expect = 3.9
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = +2
Query: 50 EDADKQNQEQS----INETDKSQIELTNQPLAALQKVLQGQMDSVVLPDNIKSESIYKSN 217
EDA+++ E + I E D + E + AA K+L+ + + V+ +N+KS I +
Sbjct: 156 EDAERKYDEAARKLAITEVDLERAEARLE--AAEAKILELEEELKVVGNNMKSLEISEQE 213
Query: 218 QSEQDFDYESAI 253
S+++ YE I
Sbjct: 214 ASQREDSYEETI 225
>sp|P13713|FLIC_SERMA Flagellin
Length = 351
Score = 28.5 bits (62), Expect = 5.1
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Frame = +2
Query: 92 TDKSQIELTNQPLAALQKVL-------------QGQMDSVVLPDNIKSESIYKSNQSEQD 232
TD PLA L K L Q + DSV+ N ++ S QD
Sbjct: 253 TDSGTDAGVKNPLATLDKALAQVDGLRSSLGAVQNRFDSVINNLNSTVNNLSASQSRIQD 312
Query: 233 FDYESAIS*INFSMLNVSIPFNTSLVCKIN 322
DY + +S N S N+ TS++ + N
Sbjct: 313 ADYATEVS--NMSRANILQQAGTSVLAQAN 340
>sp|P34216|YBE7_YEAST Hypothetical 150.8 kDa protein in SEC17-QCR1 intergenic region
Length = 1381
Score = 28.5 bits (62), Expect = 5.1
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +2
Query: 50 EDADKQNQEQSINETDKSQIELTNQPLAALQKVLQGQMDSVVLPDNIKSESIYKSNQSEQ 229
E + QE+S+ + + Q+EL +A LQK + G + + S+Y + Q E
Sbjct: 734 EKQQQVKQERSMVDVNSKQLELNQVTVANLQKEIDGLGEKI---------SVYLTKQKEL 784
Query: 230 DFDYESAI 253
+ DY+ +
Sbjct: 785 N-DYQKTV 791
>sp|O97192|TPM_HELAS Tropomyosin (Allergen Hel as 1)
Length = 284
Score = 28.5 bits (62), Expect = 5.1
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = +2
Query: 50 EDADKQNQEQS----INETDKSQIELTNQPLAALQKVLQGQMDSVVLPDNIKSESIYKSN 217
EDA+++ E + I E D + E + AA K+L+ + + V+ +N+KS I +
Sbjct: 156 EDAERKFDEAARKLAITEVDLERAEARLE--AAEAKILELEEELKVVGNNMKSLEISEQE 213
Query: 218 QSEQDFDYESAI 253
S+++ YE I
Sbjct: 214 ASQREDSYEETI 225
>sp|Q9USY7|FZOL_SCHPO Transmembrane GTPase fzo-like protein
Length = 758
Score = 28.5 bits (62), Expect = 5.1
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +2
Query: 35 HPICLEDADKQNQEQSINETDKSQIELTNQPLAALQKVLQGQMDSVVLPDNIKSESIYKS 214
+ I + DA +Q E+ + E++ + T + + +QK ++ DS VLP ++ K
Sbjct: 503 YAISVRDAMQQYLEEKLLESEDYARKRTEEAVLCIQKDVKDNFDSAVLPVFHANQMFIKK 562
Query: 215 N--QSEQDFDYE 244
+ Q ++ F +E
Sbjct: 563 HRLQLQKHFRFE 574
>sp|Q04996|HAT31_ARATH Homeobox protein HAT3.1
Length = 661
Score = 28.5 bits (62), Expect = 5.1
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Frame = +2
Query: 20 NDKVYHPICL------EDADKQNQEQSINETDKSQIELTNQPLAALQKVLQGQ---MDSV 172
+D+ Y P CL ED N+E + + E T+ ++ +G+ D +
Sbjct: 309 DDEEYDPDCLNDNENDEDGSDDNEESENEDGSSDETEFTSASDEMIESFKEGKDIMKDVM 368
Query: 173 VLPDNIKSESIYKSNQSEQDFDYESAIS 256
LP + + Y + D D ES+ S
Sbjct: 369 ALPSDDSEDDDYDPDAPTCDDDKESSNS 396
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,104,847
Number of Sequences: 369166
Number of extensions: 574869
Number of successful extensions: 1639
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1639
length of database: 68,354,980
effective HSP length: 88
effective length of database: 52,098,300
effective search space used: 1719243900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)