Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_B05
(904 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor 306 4e-83
sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor 306 7e-83
sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor 300 4e-81
sp|P23007|CISY_CHICK Citrate synthase, mitochondrial 283 6e-76
sp|P34575|CISY_CAEEL Probable citrate synthase, mitochondri... 270 3e-72
sp|P51044|CISY_ASPNG Citrate synthase, mitochondrial precursor 237 3e-62
sp|O00098|CISY_EMENI Citrate synthase, mitochondrial precursor 236 5e-62
sp|P00890|CISY1_YEAST Citrate synthase, mitochondrial precu... 231 3e-60
sp|Q10306|CISY_SCHPO Probable citrate synthase, mitochondri... 229 1e-59
sp|P79024|CISY_CANTR Citrate synthase, mitochondrial precursor 222 1e-57
>sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor
Length = 464
Score = 306 bits (785), Expect = 4e-83
Identities = 143/200 (71%), Positives = 174/200 (87%)
Frame = +3
Query: 111 ASTVNLKDILADTITKEQKKVSEFRKQHGETKVGEVTINMMYGGMRGIKGLVTETSVLDP 290
AS+ NLKDILAD I KEQ ++ FR+QHG T VG++T++MMYGGMRG+KGLV ETSVLDP
Sbjct: 28 ASSTNLKDILADLIPKEQARIKTFRQQHGNTVVGQITVDMMYGGMRGMKGLVYETSVLDP 87
Query: 291 EEGIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTEEQVKWISKEWASRADL 470
+EGIRFRGYSIPECQK+LPK++GGE+PLPEGLF+LL+TG+IPTEEQV W+SKEWA RA L
Sbjct: 88 DEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAAL 147
Query: 471 PGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVYEDSMDLIA 650
P HVV+M++NFP++LHPMSQL AA ALNSES F +AY EG+ ++ YWE +YED MDLIA
Sbjct: 148 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIA 207
Query: 651 KLSTVAAMIYRNLYRDGTSV 710
KL VAA IYRNLYR+G+S+
Sbjct: 208 KLPCVAAKIYRNLYREGSSI 227
Score = 112 bits (279), Expect = 2e-24
Identities = 52/68 (76%), Positives = 55/68 (80%)
Frame = +1
Query: 700 GHLFGCIDNSKDWSENFVRMIGYEDPSFTELMRLYLTIHSDHEGGNVSAHTCHLVGSALS 879
G G ID+ DWS NF M+GY D FTELMRLYLTIHSDHEGGNVSAHT HLVGSALS
Sbjct: 224 GSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALS 283
Query: 880 DPYLSYAA 903
DPYLS+AA
Sbjct: 284 DPYLSFAA 291
>sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor
Length = 466
Score = 306 bits (783), Expect = 7e-83
Identities = 142/200 (71%), Positives = 175/200 (87%)
Frame = +3
Query: 111 ASTVNLKDILADTITKEQKKVSEFRKQHGETKVGEVTINMMYGGMRGIKGLVTETSVLDP 290
AS+ NLKDILAD I KEQ ++ FR+QHG+T VG++T++MMYGGMRG+KGLV ETSVLDP
Sbjct: 28 ASSTNLKDILADLIPKEQARIKTFRQQHGKTVVGQITVDMMYGGMRGMKGLVYETSVLDP 87
Query: 291 EEGIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTEEQVKWISKEWASRADL 470
+EGIRFRG+SIPECQK+LPK++GGE+PLPEGLF+LL+TG IPTEEQV W+SKEWA RA L
Sbjct: 88 DEGIRFRGFSIPECQKLLPKAKGGEEPLPEGLFWLLVTGHIPTEEQVSWLSKEWAKRAAL 147
Query: 471 PGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVYEDSMDLIA 650
P HVV+M++NFP++LHPMSQL AA ALNSES F +AY +G+S++ YWE +YEDSMDLIA
Sbjct: 148 PSHVVTMLDNFPTNLHPMSQLSAAVTALNSESNFARAYAQGISRTKYWELIYEDSMDLIA 207
Query: 651 KLSTVAAMIYRNLYRDGTSV 710
KL VAA IYRNLYR+G+ +
Sbjct: 208 KLPCVAAKIYRNLYREGSGI 227
Score = 108 bits (271), Expect = 2e-23
Identities = 51/68 (75%), Positives = 55/68 (80%)
Frame = +1
Query: 700 GHLFGCIDNSKDWSENFVRMIGYEDPSFTELMRLYLTIHSDHEGGNVSAHTCHLVGSALS 879
G G ID++ DWS NF M+GY D FTEL RLYLTIHSDHEGGNVSAHT HLVGSALS
Sbjct: 224 GSGIGAIDSNLDWSHNFTNMLGYTDHQFTELTRLYLTIHSDHEGGNVSAHTSHLVGSALS 283
Query: 880 DPYLSYAA 903
DPYLS+AA
Sbjct: 284 DPYLSFAA 291
>sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor
Length = 464
Score = 300 bits (768), Expect = 4e-81
Identities = 137/200 (68%), Positives = 176/200 (88%)
Frame = +3
Query: 111 ASTVNLKDILADTITKEQKKVSEFRKQHGETKVGEVTINMMYGGMRGIKGLVTETSVLDP 290
AS+ NLKD+L++ I KEQ ++ F++QHG+T VG++T++MMYGGMRG+KGLV ETSVLDP
Sbjct: 28 ASSTNLKDVLSNLIPKEQARIKTFKQQHGKTVVGQITVDMMYGGMRGMKGLVYETSVLDP 87
Query: 291 EEGIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTEEQVKWISKEWASRADL 470
+EGIRFRGYSIPECQK+LPK++GGE+PLPEGLF+LL+TG++PTEEQV W+S+EWA RA L
Sbjct: 88 DEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQMPTEEQVSWLSREWAKRAAL 147
Query: 471 PGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVYEDSMDLIA 650
P HVV+M++NFP++LHPMSQL AA ALNSES F +AY EG++++ YWE +YED MDLIA
Sbjct: 148 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGMNRAKYWELIYEDCMDLIA 207
Query: 651 KLSTVAAMIYRNLYRDGTSV 710
KL VAA IYRNLYR+G+S+
Sbjct: 208 KLPCVAAKIYRNLYREGSSI 227
Score = 114 bits (286), Expect = 3e-25
Identities = 53/68 (77%), Positives = 56/68 (82%)
Frame = +1
Query: 700 GHLFGCIDNSKDWSENFVRMIGYEDPSFTELMRLYLTIHSDHEGGNVSAHTCHLVGSALS 879
G G ID+ DWS NF M+GY DP FTELMRLYLTIHSDHEGGNVSAHT HLVGSALS
Sbjct: 224 GSSIGAIDSRLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALS 283
Query: 880 DPYLSYAA 903
DPYLS+AA
Sbjct: 284 DPYLSFAA 291
>sp|P23007|CISY_CHICK Citrate synthase, mitochondrial
Length = 433
Score = 283 bits (723), Expect = 6e-76
Identities = 134/200 (67%), Positives = 165/200 (82%)
Frame = +3
Query: 111 ASTVNLKDILADTITKEQKKVSEFRKQHGETKVGEVTINMMYGGMRGIKGLVTETSVLDP 290
AS+ NLKD+LA I KEQ ++ FR+QHG T +G++T++M YGGMRG+KGLV ETSVLDP
Sbjct: 1 ASSTNLKDVLAALIPKEQARIKTFRQQHGGTALGQITVDMSYGGMRGMKGLVYETSVLDP 60
Query: 291 EEGIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTEEQVKWISKEWASRADL 470
+EGIRFRG+SIPECQK+LPK G +PLPEGLF+LL+TG+IPT QV W+SKEWA RA L
Sbjct: 61 DEGIRFRGFSIPECQKLLPKGGXGGEPLPEGLFWLLVTGQIPTGAQVSWLSKEWAKRAAL 120
Query: 471 PGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVYEDSMDLIA 650
P HVV+M++NFP++LHPMSQL AA ALNSES F +AY EG+ ++ YWE VYE +MDLIA
Sbjct: 121 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMDLIA 180
Query: 651 KLSTVAAMIYRNLYRDGTSV 710
KL VAA IYRNLYR G+S+
Sbjct: 181 KLPCVAAKIYRNLYRAGSSI 200
Score = 112 bits (279), Expect = 2e-24
Identities = 52/68 (76%), Positives = 55/68 (80%)
Frame = +1
Query: 700 GHLFGCIDNSKDWSENFVRMIGYEDPSFTELMRLYLTIHSDHEGGNVSAHTCHLVGSALS 879
G G ID+ DWS NF M+GY D FTELMRLYLTIHSDHEGGNVSAHT HLVGSALS
Sbjct: 197 GSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALS 256
Query: 880 DPYLSYAA 903
DPYLS+AA
Sbjct: 257 DPYLSFAA 264
>sp|P34575|CISY_CAEEL Probable citrate synthase, mitochondrial precursor
Length = 468
Score = 270 bits (691), Expect = 3e-72
Identities = 128/198 (64%), Positives = 160/198 (80%)
Frame = +3
Query: 117 TVNLKDILADTITKEQKKVSEFRKQHGETKVGEVTINMMYGGMRGIKGLVTETSVLDPEE 296
+ NLK++L+ I KV FR +HG T V V I+M+YGGMR +KG+VTETSVLDPEE
Sbjct: 32 STNLKEVLSKKIPAHNAKVKSFRTEHGSTVVQNVNIDMIYGGMRSMKGMVTETSVLDPEE 91
Query: 297 GIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTEEQVKWISKEWASRADLPG 476
GIRFRGYSIPECQK+LPK++GGE+PLPE +++LL TG +P+E Q I+KEW +RADLP
Sbjct: 92 GIRFRGYSIPECQKLLPKAKGGEEPLPEAIWWLLCTGDVPSEAQTAAITKEWNARADLPT 151
Query: 477 HVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVYEDSMDLIAKL 656
HVV M++NFP +LHPM+Q +AA AALN+ESKF AY GV+K+ YWE YEDSMDL+AKL
Sbjct: 152 HVVRMLDNFPDNLHPMAQFIAAIAALNNESKFAGAYARGVAKASYWEYAYEDSMDLLAKL 211
Query: 657 STVAAMIYRNLYRDGTSV 710
TVAA+IYRNLYRDG++V
Sbjct: 212 PTVAAIIYRNLYRDGSAV 229
Score = 107 bits (268), Expect = 3e-23
Identities = 50/68 (73%), Positives = 54/68 (79%)
Frame = +1
Query: 700 GHLFGCIDNSKDWSENFVRMIGYEDPSFTELMRLYLTIHSDHEGGNVSAHTCHLVGSALS 879
G ID KDWS NF M+GY+DP F ELMRLYL IHSDHEGGNVSAHT HLVGSALS
Sbjct: 226 GSAVSVIDPKKDWSANFSSMLGYDDPLFAELMRLYLVIHSDHEGGNVSAHTSHLVGSALS 285
Query: 880 DPYLSYAA 903
DPYLS++A
Sbjct: 286 DPYLSFSA 293
>sp|P51044|CISY_ASPNG Citrate synthase, mitochondrial precursor
Length = 475
Score = 237 bits (605), Expect = 3e-62
Identities = 114/204 (55%), Positives = 151/204 (74%)
Frame = +3
Query: 90 GIRNVRFASTVNLKDILADTITKEQKKVSEFRKQHGETKVGEVTINMMYGGMRGIKGLVT 269
G+R +LK+ A+ + E +KV + RK+HG +GEVT++ YGG RG+K LV
Sbjct: 30 GLRCYSTGKAKSLKETFAEKLPAELEKVKKLRKEHGSKVIGEVTLDQAYGGARGVKCLVW 89
Query: 270 ETSVLDPEEGIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTEEQVKWISKE 449
E SVLD EEGIRFRG +IPECQ++LPK+ GG++PLPEGLF+LLLTG+IPTE+QV+ +S E
Sbjct: 90 EGSVLDSEEGIRFRGRTIPECQELLPKAPGGQEPLPEGLFWLLLTGEIPTEQQVRDLSAE 149
Query: 450 WASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVYE 629
WA+R+DLP + +I+ PS+LHPMSQ A AL ES F KAY +G++K YW +E
Sbjct: 150 WAARSDLPKFIEELIDRCPSTLHPMSQFSLAVTALEHESAFAKAYAKGINKKDYWNYTFE 209
Query: 630 DSMDLIAKLSTVAAMIYRNLYRDG 701
DSMDLIAKL T+AA IYRN+++DG
Sbjct: 210 DSMDLIAKLPTIAAKIYRNVFKDG 233
Score = 86.3 bits (212), Expect = 1e-16
Identities = 44/63 (69%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Frame = +1
Query: 718 IDNSKDWSENFVRMIGYEDPS-FTELMRLYLTIHSDHEGGNVSAHTCHLVGSALSDPYLS 894
I KD+S N +GY D + F ELMRLYLTIHSDHEGGNVSAHT HLVGSALS P LS
Sbjct: 238 IQKDKDYSYNLANQLGYGDNNDFVELMRLYLTIHSDHEGGNVSAHTTHLVGSALSSPMLS 297
Query: 895 YAA 903
AA
Sbjct: 298 LAA 300
>sp|O00098|CISY_EMENI Citrate synthase, mitochondrial precursor
Length = 474
Score = 236 bits (603), Expect = 5e-62
Identities = 113/204 (55%), Positives = 151/204 (74%)
Frame = +3
Query: 90 GIRNVRFASTVNLKDILADTITKEQKKVSEFRKQHGETKVGEVTINMMYGGMRGIKGLVT 269
G+R T +LK+ AD + E +KV + RK+HG +GE+T++ YGG RG+K LV
Sbjct: 30 GLRCYSTGKTKSLKETFADKLPGELEKVKKLRKEHGNKVIGELTLDQAYGGARGVKCLVW 89
Query: 270 ETSVLDPEEGIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTEEQVKWISKE 449
E SVLD EEGIRFRG +IPECQK+LPK+ GGE+PLPEGLF+LLLTG++P+E+QV+ +S E
Sbjct: 90 EGSVLDSEEGIRFRGLTIPECQKLLPKAPGGEEPLPEGLFWLLLTGEVPSEQQVRDLSAE 149
Query: 450 WASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVYE 629
WA+R+DLP + +I+ PS+LHPM+Q A AL ES F KA +G++K YW +E
Sbjct: 150 WAARSDLPKFIEELIDRVPSTLHPMAQFSLAVTALEHESAFAKATAKGINKKEYWHYTFE 209
Query: 630 DSMDLIAKLSTVAAMIYRNLYRDG 701
DSMDLIAKL T+AA IYRN+++DG
Sbjct: 210 DSMDLIAKLPTIAAKIYRNVFKDG 233
Score = 85.1 bits (209), Expect = 2e-16
Identities = 43/63 (68%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Frame = +1
Query: 718 IDNSKDWSENFVRMIGYED-PSFTELMRLYLTIHSDHEGGNVSAHTCHLVGSALSDPYLS 894
I KD+S N +G+ D F ELMRLYLTIHSDHEGGNVSAHT HLVGSALS P LS
Sbjct: 238 IQKDKDYSYNLANQLGFADNKDFVELMRLYLTIHSDHEGGNVSAHTTHLVGSALSSPMLS 297
Query: 895 YAA 903
AA
Sbjct: 298 LAA 300
>sp|P00890|CISY1_YEAST Citrate synthase, mitochondrial precursor
Length = 479
Score = 231 bits (588), Expect = 3e-60
Identities = 109/209 (52%), Positives = 152/209 (72%)
Frame = +3
Query: 75 VFLSCGIRNVRFASTVNLKDILADTITKEQKKVSEFRKQHGETKVGEVTINMMYGGMRGI 254
+F R+ AS LK+ A+ I + +++ +F+K+HG+T +GEV + YGGMRGI
Sbjct: 28 LFALLNARHYSSASEQTLKERFAEIIPAKAEEIKKFKKEHGKTVIGEVLLEQAYGGMRGI 87
Query: 255 KGLVTETSVLDPEEGIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTEEQVK 434
KGLV E SVLDPEEGIRFRG +IPE Q+ LPK++G +PLPE LF+LLLTG+IPT+ QVK
Sbjct: 88 KGLVWEGSVLDPEEGIRFRGRTIPEIQRELPKAEGSTEPLPEALFWLLLTGEIPTDAQVK 147
Query: 435 WISKEWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYW 614
+S + A+R+++P HV+ ++++ P LHPM+Q A AL SESKF KAY +GVSK YW
Sbjct: 148 ALSADLAARSEIPEHVIQLLDSLPKDLHPMAQFSIAVTALESESKFAKAYAQGVSKKEYW 207
Query: 615 ETVYEDSMDLIAKLSTVAAMIYRNLYRDG 701
+EDS+DL+ KL +A+ IYRN+++DG
Sbjct: 208 SYTFEDSLDLLGKLPVIASKIYRNVFKDG 236
Score = 92.0 bits (227), Expect = 2e-18
Identities = 42/61 (68%), Positives = 50/61 (81%)
Frame = +1
Query: 721 DNSKDWSENFVRMIGYEDPSFTELMRLYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYA 900
D + D+ +N +++GYE+ F +LMRLYLTIHSDHEGGNVSAHT HLVGSALS PYLS A
Sbjct: 242 DPNADYGKNLAQLLGYENKDFIDLMRLYLTIHSDHEGGNVSAHTTHLVGSALSSPYLSLA 301
Query: 901 A 903
A
Sbjct: 302 A 302
>sp|Q10306|CISY_SCHPO Probable citrate synthase, mitochondrial precursor
Length = 473
Score = 229 bits (583), Expect = 1e-59
Identities = 109/193 (56%), Positives = 142/193 (73%)
Frame = +3
Query: 123 NLKDILADTITKEQKKVSEFRKQHGETKVGEVTINMMYGGMRGIKGLVTETSVLDPEEGI 302
+LKD LA+ I ++Q ++ +FR +HG+ +GEVTIN MYGG RG++ L+ E SVLDP EGI
Sbjct: 41 SLKDRLAELIPEKQAEIKKFRAEHGQDVIGEVTINQMYGGARGVRSLIWEGSVLDPNEGI 100
Query: 303 RFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTEEQVKWISKEWASRADLPGHV 482
RFRGY+IPECQK+LP S G+QPLPE LF+LL+TG+IPT QV+ +S +WA+R+ LP V
Sbjct: 101 RFRGYTIPECQKLLPSSPNGKQPLPESLFWLLVTGEIPTLSQVQALSADWAARSQLPKFV 160
Query: 483 VSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVYEDSMDLIAKLST 662
+I+ P +LHPM+Q A AL +S F KAY G++K YW+ YED MDLIAK
Sbjct: 161 EELIDRCPPTLHPMAQFSLAVTALEHDSAFAKAYERGMNKHDYWKYEYEDCMDLIAKTVP 220
Query: 663 VAAMIYRNLYRDG 701
+A IYRNLYRDG
Sbjct: 221 IAGRIYRNLYRDG 233
Score = 83.6 bits (205), Expect = 7e-16
Identities = 42/63 (66%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Frame = +1
Query: 718 IDNSKDWSENFVRMIGY-EDPSFTELMRLYLTIHSDHEGGNVSAHTCHLVGSALSDPYLS 894
I KD S NF ++G+ + F ELMRLYLTIH+DHEGGNVSAHT HLVGSALS P+LS
Sbjct: 238 IQMDKDHSYNFANVLGFANNEEFVELMRLYLTIHADHEGGNVSAHTGHLVGSALSSPFLS 297
Query: 895 YAA 903
AA
Sbjct: 298 MAA 300
>sp|P79024|CISY_CANTR Citrate synthase, mitochondrial precursor
Length = 467
Score = 222 bits (565), Expect = 1e-57
Identities = 108/192 (56%), Positives = 144/192 (75%)
Frame = +3
Query: 126 LKDILADTITKEQKKVSEFRKQHGETKVGEVTINMMYGGMRGIKGLVTETSVLDPEEGIR 305
LK L + + + ++V + +K +G+T +GEV + YGGMRGIKGLV E SVLDP EGIR
Sbjct: 32 LKQRLEEILPAKAEEVKQLKKDYGKTVIGEVLLEQAYGGMRGIKGLVWEGSVLDPIEGIR 91
Query: 306 FRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTEEQVKWISKEWASRADLPGHVV 485
FRG +IP+ QK LPK+ GGE+PLPE LF+LLLTG++PTE Q + +S+E+A+R+ LP HV
Sbjct: 92 FRGRTIPDIQKELPKAPGGEEPLPEALFWLLLTGEVPTEAQTRALSEEFAARSALPKHVE 151
Query: 486 SMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVYEDSMDLIAKLSTV 665
+I+ PS LHPM+Q A AL SES+F KAY +GV KS YW+ YEDS++L+AKL T+
Sbjct: 152 ELIDRSPSHLHPMAQFSIAVTALESESQFAKAYAKGVHKSEYWKYTYEDSIELLAKLPTI 211
Query: 666 AAMIYRNLYRDG 701
AA IYRN++ DG
Sbjct: 212 AAKIYRNVFHDG 223
Score = 86.7 bits (213), Expect = 8e-17
Identities = 44/69 (63%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Frame = +1
Query: 700 GHLFGCIDNSKDWSENFVRMIGY-EDPSFTELMRLYLTIHSDHEGGNVSAHTCHLVGSAL 876
G L ID+ D+ N ++G+ E+ F ELMRLYLTIHSDHEGGNVSAHT HLVGSAL
Sbjct: 223 GKLPAQIDSKLDYGANLASLLGFGENKEFLELMRLYLTIHSDHEGGNVSAHTTHLVGSAL 282
Query: 877 SDPYLSYAA 903
S P+LS AA
Sbjct: 283 SSPFLSLAA 291
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,669,796
Number of Sequences: 369166
Number of extensions: 2176405
Number of successful extensions: 5163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5140
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9126484700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)