Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_A18
(874 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13347|IF32_HUMAN Eukaryotic translation initiation fact... 295 1e-79
sp|Q9QZD9|IF32_MOUSE Eukaryotic translation initiation fact... 292 7e-79
sp|O02195|IF32_DROME Eukaryotic translation initiation fact... 283 6e-76
sp|P79083|IF32_SCHPO Eukaryotic translation initiation fact... 212 1e-54
sp|P40217|IF32_YEAST Eukaryotic translation initiation fact... 202 8e-52
sp|Q38884|IF32_ARATH Eukaryotic translation initiation fact... 194 2e-49
sp|Q9Z1Z2|STRAP_MOUSE Serine-threonine kinase receptor-asso... 96 1e-19
sp|Q9Y3F4|STRAP_HUMAN Serine-threonine kinase receptor-asso... 95 2e-19
sp|Q96DI7|WDR57_HUMAN WD-repeat protein 57 (Prp8-binding pr... 55 3e-07
sp|Q00808|HETE1_PODAN Vegetatible incompatibility protein H... 55 3e-07
>sp|Q13347|IF32_HUMAN Eukaryotic translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor-interacting
protein 1) (TRIP-1)
Length = 325
Score = 295 bits (754), Expect = 1e-79
Identities = 136/266 (51%), Positives = 192/266 (72%)
Frame = +2
Query: 2 GHKGAVWCLDIDWETRFLITGAADDTLNIWDVETGTLMNSIKTLTSVRSCQFDYSGNSIL 181
GH GAVWC+D DW+T+ ++TG+AD++ +WD ETG + +KT ++VR+C FD+ GN I+
Sbjct: 50 GHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIM 109
Query: 182 MTTDNIKNQKCEMMVFDIRDKSQIENSEPIWRVDCPSDSKITNCLWGPLDSVIYTSHDNG 361
+TD +C + FD+RD SQI+N+EP ++ C +DSKIT+ +WGPL I H++G
Sbjct: 110 FSTDKQMGYQCFVSFFDLRDPSQIDNNEPYMKIPC-NDSKITSAVWGPLGECIIAGHESG 168
Query: 362 QLCRFNMKAMAFDNVTKPHNMSITDMQCSRDNTLFITSSKDQTAKLYNAYDMEVIKTFTA 541
+L +++ K+ K H+ I D+Q SRD T+F+T+SKD TAKL+++ +E KTF
Sbjct: 169 ELNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRT 228
Query: 542 DRPINSAAISPNREHVLLGGGQEAADVTKTAASKGKFEALFYHMIFENEITSVKGHFGPI 721
+RP+NSAA+SPN +HV+LGGGQEA DVT T+ GKFEA F+H+ FE E VKGHFGPI
Sbjct: 229 ERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPI 288
Query: 722 NSVAFNPTGMGYASGGEEGLVRMYQF 799
NSVAF+P G Y+SGGE+G VR++ F
Sbjct: 289 NSVAFHPDGKSYSSGGEDGYVRIHYF 314
>sp|Q9QZD9|IF32_MOUSE Eukaryotic translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor-interacting
protein 1) (TRIP-1)
Length = 325
Score = 292 bits (748), Expect = 7e-79
Identities = 134/266 (50%), Positives = 192/266 (72%)
Frame = +2
Query: 2 GHKGAVWCLDIDWETRFLITGAADDTLNIWDVETGTLMNSIKTLTSVRSCQFDYSGNSIL 181
GH GAVWC+D DW+T+ ++TG+AD++ +WD ETG + +KT ++VR+C FD+ GN I+
Sbjct: 50 GHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIM 109
Query: 182 MTTDNIKNQKCEMMVFDIRDKSQIENSEPIWRVDCPSDSKITNCLWGPLDSVIYTSHDNG 361
+TD +C + FD+RD SQI+++EP ++ C +DSKIT+ +WGPL + H++G
Sbjct: 110 FSTDKQMGYQCFVSFFDLRDPSQIDSNEPYMKIPC-NDSKITSAVWGPLGECVIAGHESG 168
Query: 362 QLCRFNMKAMAFDNVTKPHNMSITDMQCSRDNTLFITSSKDQTAKLYNAYDMEVIKTFTA 541
+L +++ K+ K H+ I D+Q SRD T+F+T+SKD TAKL+++ +E KTF
Sbjct: 169 ELNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRT 228
Query: 542 DRPINSAAISPNREHVLLGGGQEAADVTKTAASKGKFEALFYHMIFENEITSVKGHFGPI 721
+RP+NSAA+SPN +HV+LGGGQEA DVT T+ GKFEA F+H+ FE E VKGHFGPI
Sbjct: 229 ERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPI 288
Query: 722 NSVAFNPTGMGYASGGEEGLVRMYQF 799
NSVAF+P G Y+SGGE+G VR++ F
Sbjct: 289 NSVAFHPDGKSYSSGGEDGYVRIHYF 314
>sp|O02195|IF32_DROME Eukaryotic translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3i) (TRIP-1 homolog)
Length = 326
Score = 283 bits (723), Expect = 6e-76
Identities = 135/268 (50%), Positives = 186/268 (69%), Gaps = 2/268 (0%)
Frame = +2
Query: 2 GHKGAVWCLDIDWETRFLITGAADDTLNIWDVETGTLMNSIKTLTSVRSCQFDYSGNSIL 181
GH+GAVWCLD+DWE+R LITGA D T IWDVE GT++ SI T +SVR+ F +SGN
Sbjct: 50 GHQGAVWCLDVDWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAA 109
Query: 182 MTTDNIKNQKCEMMVFDIRDK-SQIENSEPIWRVDCPSDSKITNCLWGPLDSVIYTSHDN 358
+TD Q CE+ + D+R+ S + EP R+ ++SKIT+ LWGPLD I T HDN
Sbjct: 110 YSTDKAMGQSCELFLIDVRNADSSLSEQEPTLRIPM-TESKITSMLWGPLDETIITGHDN 168
Query: 359 GQLCRFNM-KAMAFDNVTKPHNMSITDMQCSRDNTLFITSSKDQTAKLYNAYDMEVIKTF 535
G + +++ K + H+ I DMQ S+D T+F+T+SKD TAKL+++ + +KT+
Sbjct: 169 GNIAIWDIRKGQKVVDSGTDHSAGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTY 228
Query: 536 TADRPINSAAISPNREHVLLGGGQEAADVTKTAASKGKFEALFYHMIFENEITSVKGHFG 715
+RP+NSAAISP +HV+LGGGQ+A +VT T+ GKF++ F+H+I+E E +KGHFG
Sbjct: 229 KTERPVNSAAISPIMDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFG 288
Query: 716 PINSVAFNPTGMGYASGGEEGLVRMYQF 799
PINS+AF+P G YASGGE+G VR+ F
Sbjct: 289 PINSLAFHPDGKSYASGGEDGFVRVQTF 316
>sp|P79083|IF32_SCHPO Eukaryotic translation initiation factor 3 39 kDa subunit (eIF3
p39) (Translation initiation factor eIF3, p39 subunit)
(Suppressor of uncontrolled mitosis 1)
Length = 328
Score = 212 bits (539), Expect = 1e-54
Identities = 111/268 (41%), Positives = 160/268 (59%), Gaps = 2/268 (0%)
Frame = +2
Query: 2 GHKGAVWCLDIDWETRFLITGAADDTLNIWDVETGTLMNSIKTLTSVRSCQFDYSGNSIL 181
GH GA+W DI+ + +++GAAD+T+ +WDV+TG + + T+V+ +F+ IL
Sbjct: 50 GHTGAIWTCDINKSSTLMVSGAADNTMRLWDVKTGKQLYKWEFPTAVKRVEFNEDDTRIL 109
Query: 182 MTTDNIKNQKCEMMVFDIRDKSQIENSEPIWRVDCPSDSKITNCLWGPLDSVIYTSHDNG 361
T+ + VF + +E V +SK T W L ++T H++G
Sbjct: 110 AVTEERMGYAGTVTVFRVPISESDAAAETPLYVITTRESKATVAGWSYLSKFLFTGHEDG 169
Query: 362 QLCRFNMKAMAFDNVTKPHNM--SITDMQCSRDNTLFITSSKDQTAKLYNAYDMEVIKTF 535
+ R++ F + HN +ITD+Q D T FITS KD TAK + EVIKT+
Sbjct: 170 SVSRYDAITGEFVESKQVHNSGSTITDLQFYPDRTYFITSCKDTTAKAIDVDSFEVIKTY 229
Query: 536 TADRPINSAAISPNREHVLLGGGQEAADVTKTAASKGKFEALFYHMIFENEITSVKGHFG 715
D P+N+++ +P ++ V+LGGGQEA DVT TAA +GKFEA FYH I E E+ VKGHFG
Sbjct: 230 LTDTPLNTSSFTPVQDFVILGGGQEARDVTTTAARQGKFEARFYHAILEEELGRVKGHFG 289
Query: 716 PINSVAFNPTGMGYASGGEEGLVRMYQF 799
PIN++A +P G GYASGGE+G VR++ F
Sbjct: 290 PINTIAVHPKGTGYASGGEDGYVRVHFF 317
>sp|P40217|IF32_YEAST Eukaryotic translation initiation factor 3 39 kDa subunit (eIF3
p39) (Translation initiation factor eIF3, p39 subunit)
Length = 347
Score = 202 bits (515), Expect = 8e-52
Identities = 105/273 (38%), Positives = 163/273 (59%), Gaps = 7/273 (2%)
Frame = +2
Query: 2 GHKGAVWCLDIDWETRFLITGAADDTLNIWDVETGTLMNSIKTLTSVRSCQFDYSGNSIL 181
GH G +W +D+D T++ +TG+AD ++ +WDV G + + K+ V+ +F GN L
Sbjct: 50 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFL 109
Query: 182 MTTDNIKNQKCEMMVFDI-RDKSQIE----NSEPIWRVDCPSD-SKITNCLWGPLDSVIY 343
DN+ + +++I RD + E + EPI ++ T W I
Sbjct: 110 AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYII 169
Query: 344 TSHDNGQLCRFNMKA-MAFDNVTKPHNMSITDMQCSRDNTLFITSSKDQTAKLYNAYDME 520
H +G++ ++++ + + H SI+DMQ S D T FITSS+D + L + ++
Sbjct: 170 AGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ 229
Query: 521 VIKTFTADRPINSAAISPNREHVLLGGGQEAADVTKTAASKGKFEALFYHMIFENEITSV 700
V+K + D P+N+A I+P +E ++LGGGQEA DVT T+A++GKFEA FYH IFE EI V
Sbjct: 230 VLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV 289
Query: 701 KGHFGPINSVAFNPTGMGYASGGEEGLVRMYQF 799
+GHFGP+N+VA +P G YASGGE+G +R++ F
Sbjct: 290 QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHF 322
>sp|Q38884|IF32_ARATH Eukaryotic translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1)
Length = 328
Score = 194 bits (494), Expect = 2e-49
Identities = 101/270 (37%), Positives = 160/270 (59%), Gaps = 4/270 (1%)
Frame = +2
Query: 2 GHKGAVWCLDIDWETRFLITGAADDTLNIWDVETGTLMNSIKTLTSVRSCQFDYSGNSIL 181
GH GAVWC D+ ++ LITG+AD T +WDV++G + + K RS F +
Sbjct: 50 GHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAV 109
Query: 182 MTTDNIKNQKCEMMVFDIRDKSQIENSEPIWRVDCPSDSK-ITNCLWGPLDSVIYTSHDN 358
+TTD+ ++ + V I + + +++E + + CP K I +WGPL+ I + ++
Sbjct: 110 ITTDHFVDRTAAIHVKRIAEDPEEQDAESVLVLHCPDGKKRINRAVWGPLNQTIVSGGED 169
Query: 359 GQLCRFNM---KAMAFDNVTKPHNMSITDMQCSRDNTLFITSSKDQTAKLYNAYDMEVIK 529
+ ++ K + + H IT + + D++ F+T S D+TAKL++ + ++K
Sbjct: 170 KVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLK 229
Query: 530 TFTADRPINSAAISPNREHVLLGGGQEAADVTKTAASKGKFEALFYHMIFENEITSVKGH 709
T+T P+N+ ++SP HV+LGGGQ+A+ VT T GKFEA FY I + EI VKGH
Sbjct: 230 TYTTVVPVNAVSLSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGH 289
Query: 710 FGPINSVAFNPTGMGYASGGEEGLVRMYQF 799
FGPIN++AFNP G ++SGGE+G VR++ F
Sbjct: 290 FGPINALAFNPDGKSFSSGGEDGYVRLHHF 319
>sp|Q9Z1Z2|STRAP_MOUSE Serine-threonine kinase receptor-associated protein
(UNR-interacting protein)
Length = 351
Score = 95.9 bits (237), Expect = 1e-19
Identities = 75/265 (28%), Positives = 121/265 (45%)
Frame = +2
Query: 2 GHKGAVWCLDIDWETRFLITGAADDTLNIWDVETGTLMNSIKTLTSVRSCQFDYSGNSIL 181
GHKGAVW ++ + T AAD T +WD +G + ++ V++ F N +L
Sbjct: 57 GHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLL 116
Query: 182 MTTDNIKNQKCEMMVFDIRDKSQIENSEPIWRVDCPSDSKITNCLWGPLDSVIYTSHDNG 361
Q + ++D+ +K + E E S I LW D I ++ D
Sbjct: 117 TG-----GQDKLLRIYDL-NKPEAEPKEISGHT-----SGIKKALWCSDDKQILSADD-- 163
Query: 362 QLCRFNMKAMAFDNVTKPHNMSITDMQCSRDNTLFITSSKDQTAKLYNAYDMEVIKTFTA 541
+ R A + + NMS++ M+ + + + + A ++A +E IK+F A
Sbjct: 164 KTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIA-FHSAVSLEPIKSFEA 222
Query: 542 DRPINSAAISPNREHVLLGGGQEAADVTKTAASKGKFEALFYHMIFENEITSVKGHFGPI 721
INSA++ P +E ++ GG F+ Y E+ S KGHFGPI
Sbjct: 223 PATINSASLHPEKEFLVAGGED--------------FKLYKYDYNSGEELESYKGHFGPI 268
Query: 722 NSVAFNPTGMGYASGGEEGLVRMYQ 796
+ V F+P G YASG E+G +R++Q
Sbjct: 269 HCVRFSPDGELYASGSEDGTLRLWQ 293
>sp|Q9Y3F4|STRAP_HUMAN Serine-threonine kinase receptor-associated protein
(UNR-interacting protein) (WD-40 repeat protein PT-WD)
(MAP activator with WD repeats)
Length = 350
Score = 95.1 bits (235), Expect = 2e-19
Identities = 74/265 (27%), Positives = 121/265 (45%)
Frame = +2
Query: 2 GHKGAVWCLDIDWETRFLITGAADDTLNIWDVETGTLMNSIKTLTSVRSCQFDYSGNSIL 181
GHKGAVW ++ + T AAD T +WD +G + ++ V++ F N +L
Sbjct: 57 GHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLL 116
Query: 182 MTTDNIKNQKCEMMVFDIRDKSQIENSEPIWRVDCPSDSKITNCLWGPLDSVIYTSHDNG 361
Q + ++D+ +K + E E S I LW D I ++ D
Sbjct: 117 TG-----GQDKLLRIYDL-NKPEAEPKEISGHT-----SGIKKALWCSEDKQILSADD-- 163
Query: 362 QLCRFNMKAMAFDNVTKPHNMSITDMQCSRDNTLFITSSKDQTAKLYNAYDMEVIKTFTA 541
+ R A + + NMS++ M+ + + + + A ++A ++ IK+F A
Sbjct: 164 KTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIA-FHSAVSLDPIKSFEA 222
Query: 542 DRPINSAAISPNREHVLLGGGQEAADVTKTAASKGKFEALFYHMIFENEITSVKGHFGPI 721
INSA++ P +E ++ GG F+ Y E+ S KGHFGPI
Sbjct: 223 PATINSASLHPEKEFLVAGGED--------------FKLYKYDYNSGEELESYKGHFGPI 268
Query: 722 NSVAFNPTGMGYASGGEEGLVRMYQ 796
+ V F+P G YASG E+G +R++Q
Sbjct: 269 HCVRFSPDGELYASGSEDGTLRLWQ 293
>sp|Q96DI7|WDR57_HUMAN WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP) (U5
snRNP-specific 40 kDa protein) (38 kDa splicing factor)
Length = 357
Score = 55.1 bits (131), Expect = 3e-07
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 10/257 (3%)
Frame = +2
Query: 2 GHKGAVWCLDIDWETRFLITGAADDTLNIWDVETGTLMNSIKTLTS-VRSCQFDYSGNSI 178
GH GAV L + + L + + D T+ +WD ETG + +K TS V SC G +
Sbjct: 107 GHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQL 166
Query: 179 LMTTDNIKNQKCEMMVFDIRDKSQIENSEPIWRVDCPSDSKITNCLWGPLDSVIYTSHDN 358
+ T + K ++DIR K+ I+ + ++V + + + D +I DN
Sbjct: 167 VCTGSDDGTVK----LWDIRKKAAIQTFQNTYQVLAVTFNDTS-------DQIISGGIDN 215
Query: 359 GQLCRFNMKAMAFDNVTKPHNMSITDMQCSRDNTLFITSSKDQTAKLYN----AYDMEVI 526
+ ++++ + H S+T + S + + ++++ D T ++++ A +
Sbjct: 216 -DIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCV 274
Query: 527 KTFTA-----DRPINSAAISPNREHVLLGGGQEAADVTKTAASKGKFEALFYHMIFENEI 691
K F ++ + + SP+ + G V T + + + Y
Sbjct: 275 KIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRR-----ILY-------- 321
Query: 692 TSVKGHFGPINSVAFNP 742
+ GH G IN VAF+P
Sbjct: 322 -KLPGHAGSINEVAFHP 337
>sp|Q00808|HETE1_PODAN Vegetatible incompatibility protein HET-E-1
Length = 1356
Score = 55.1 bits (131), Expect = 3e-07
Identities = 56/266 (21%), Positives = 104/266 (39%), Gaps = 2/266 (0%)
Frame = +2
Query: 2 GHKGAVWCLDIDWETRFLITGAADDTLNIWDVETGTLMNSIKTLTS-VRSCQFDYSGNSI 178
GH G+VW + + + + +G+ D T+ IWD +GT +++ V+S F G +
Sbjct: 1007 GHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRV 1066
Query: 179 LMTTDNIKNQKCEMMVFDIRDKSQIENSEPIWRVDCPSDSKITNCLWGPLDSVIYTSHDN 358
+D+ K V ++ + + +W V D + G +D I
Sbjct: 1067 ASGSDD-HTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQ--RVASGSIDGTIKIWDAA 1123
Query: 359 GQLCRFNMKAMAFDNVTKPHNMSITDMQCSRDNTLFITSSKDQTAKLYNAYDMEVIKTFT 538
C ++ H + + S D + S D T K+++A +T
Sbjct: 1124 SGTCTQTLEG---------HGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLE 1174
Query: 539 ADRP-INSAAISPNREHVLLGGGQEAADVTKTAASKGKFEALFYHMIFENEITSVKGHFG 715
+ S A SP+ + V G + + TA+ +++GH G
Sbjct: 1175 GHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASG--------------TCTQTLEGHGG 1220
Query: 716 PINSVAFNPTGMGYASGGEEGLVRMY 793
+ SVAF+P G ASG + ++++
Sbjct: 1221 WVQSVAFSPDGQRVASGSSDNTIKIW 1246
Score = 48.5 bits (114), Expect = 2e-05
Identities = 48/266 (18%), Positives = 103/266 (38%), Gaps = 2/266 (0%)
Frame = +2
Query: 2 GHKGAVWCLDIDWETRFLITGAADDTLNIWDVETGTLMNSIKTLTS-VRSCQFDYSGNSI 178
GH G+VW + + + +G+ D T+ IWD +GT +++ V+S F G +
Sbjct: 881 GHGGSVWSVAFSPDRERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRV 940
Query: 179 LMTTDNIKNQKCEMMVFDIRDKSQIENSEPIWRVDCPSDSKITNCLWGPLDSVIYTSHDN 358
+D+ + ++D + + E S + + + P + + +
Sbjct: 941 ASGSDD-----HTIKIWDAASGTCTQTLE-------GHGSSVLSVAFSPDGQRVASGSGD 988
Query: 359 GQLCRFNMKAMAFDNVTKPHNMSITDMQCSRDNTLFITSSKDQTAKLYNAYDMEVIKTFT 538
+ ++ + + H S+ + S D + S D+T K+++ +T
Sbjct: 989 KTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLE 1048
Query: 539 ADRP-INSAAISPNREHVLLGGGQEAADVTKTAASKGKFEALFYHMIFENEITSVKGHFG 715
+ S SP+ + V G + + + +++GH
Sbjct: 1049 GHGGWVQSVVFSPDGQRVASGSDDHTIKI--------------WDAVSGTCTQTLEGHGD 1094
Query: 716 PINSVAFNPTGMGYASGGEEGLVRMY 793
+ SVAF+P G ASG +G ++++
Sbjct: 1095 SVWSVAFSPDGQRVASGSIDGTIKIW 1120
Score = 43.9 bits (102), Expect = 6e-04
Identities = 37/176 (21%), Positives = 74/176 (42%), Gaps = 7/176 (3%)
Frame = +2
Query: 287 PSDSKITNCLWGPLDSVI---YTSHDNGQLCRFNMKAMAFDNVTKP---HNMSITDMQCS 448
P + + ++ P DS+I + + G + ++ ++ T+ H S+ + S
Sbjct: 791 PLQAYTSALVFAPTDSMIKKIFKKEEPGWISTISVVEAEWNACTQTLEGHGSSVLSVAFS 850
Query: 449 RDNTLFITSSKDQTAKLYNAYDMEVIKTFTADR-PINSAAISPNREHVLLGGGQEAADVT 625
D + S D+T K+++ +T + S A SP+RE V G + +
Sbjct: 851 ADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERVASGSDDKTIKIW 910
Query: 626 KTAASKGKFEALFYHMIFENEITSVKGHFGPINSVAFNPTGMGYASGGEEGLVRMY 793
A+ +++GH G + SVAF+P G ASG ++ ++++
Sbjct: 911 DAASGTCT--------------QTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIW 952
Score = 35.4 bits (80), Expect = 0.21
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +2
Query: 2 GHKGAVWCLDIDWETRFLITGAADDTLNIWDVETGTLMNSIKTLTSVRSCQFDYS 166
GH G V + + + + +G++D+T+ IWD +GT ++ ++ FDY+
Sbjct: 1217 GHGGWVQSVAFSPDGQRVASGSSDNTIKIWDTASGTCTQTLNVGSTATCLSFDYT 1271
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,678,109
Number of Sequences: 369166
Number of extensions: 1788349
Number of successful extensions: 6381
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6036
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)