Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_A14
(686 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q07816|BCLX_CHICK Apoptosis regulator Bcl-X (Bcl-2-like ... 44 5e-04
sp|Q91828|AR11_XENLA Apoptosis regulator R11 (XR11) 42 0.001
sp|P53563|BCLX_RAT Apoptosis regulator Bcl-X (Bcl-2-like 1 ... 40 0.006
sp|Q64373|BCLX_MOUSE Apoptosis regulator Bcl-X (Bcl-2-like ... 40 0.006
sp|O77737|BCLX_PIG Apoptosis regulator Bcl-X (Bcl-2-like 1 ... 40 0.006
sp|Q07817|BCLX_HUMAN Apoptosis regulator Bcl-X (Bcl-2-like ... 40 0.008
sp|Q00709|BCL2_CHICK Apoptosis regulator Bcl-2 39 0.013
sp|P10415|BCL2_HUMAN Apoptosis regulator Bcl-2 38 0.022
sp|Q9JJV8|BCL2_CRIGR Apoptosis regulator Bcl-2 38 0.022
sp|P10417|BCL2_MOUSE Apoptosis regulator Bcl-2 38 0.022
>sp|Q07816|BCLX_CHICK Apoptosis regulator Bcl-X (Bcl-2-like 1 protein)
Length = 229
Score = 43.5 bits (101), Expect = 5e-04
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Frame = +2
Query: 20 DCIKWSRVIVAFMY-----IVQVLKISQKEYDKYYNWSIELVLTKIHPWVRENGGWEHII 184
D + W R++ F + + V K + + +W + + PW++ENGGWE +
Sbjct: 129 DGVNWGRIVAFFSFGGALCVESVDKEMRVLVGRIVSWMTTYLTDHLDPWIQENGGWERFV 188
Query: 185 QL--SNSRNHLDEVTDLFKKLGTVALGITGLFALG 283
L +N+ L + + F K + G+ LG
Sbjct: 189 DLYGNNAAAELRKGQETFNKWLLTGATVAGVLLLG 223
>sp|Q91828|AR11_XENLA Apoptosis regulator R11 (XR11)
Length = 204
Score = 42.4 bits (98), Expect = 0.001
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Frame = +2
Query: 20 DCIKWSRVIVAFMY-----IVQVLKISQKEYDKYYNWSIELVLTKIHPWVRENGGWEHII 184
D W R++ F + + K + W + + + PW++ENGGWE +
Sbjct: 105 DGTNWGRIVAFFSFGRALCVESANKEMTDLLPRIVQWMVNYLEHTLQPWMQENGGWEAFV 164
Query: 185 QL--SNSRNHLDEVTDLFKKLGTVALGITGLFAL 280
L N+ E + F +L T+ + +TG+FAL
Sbjct: 165 GLYGKNAAAQSRESQERFGRLLTIVM-LTGVFAL 197
>sp|P53563|BCLX_RAT Apoptosis regulator Bcl-X (Bcl-2-like 1 protein)
Length = 233
Score = 40.0 bits (92), Expect = 0.006
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Frame = +2
Query: 20 DCIKWSRVIVAFMY-----IVQVLKISQKEYDKYYNWSIELVLTKIHPWVRENGGWEHII 184
D + W R++ F + + V K Q + +W + + PW++ENGGW+ +
Sbjct: 133 DGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFV 192
Query: 185 QL--SNSRNHLDEVTDLFKKLGTVALGITGLFALG 283
L +N+ + + F + + + G+ LG
Sbjct: 193 DLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLG 227
>sp|Q64373|BCLX_MOUSE Apoptosis regulator Bcl-X (Bcl-2-like 1 protein)
Length = 233
Score = 40.0 bits (92), Expect = 0.006
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Frame = +2
Query: 20 DCIKWSRVIVAFMY-----IVQVLKISQKEYDKYYNWSIELVLTKIHPWVRENGGWEHII 184
D + W R++ F + + V K Q + +W + + PW++ENGGW+ +
Sbjct: 133 DGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFV 192
Query: 185 QL--SNSRNHLDEVTDLFKKLGTVALGITGLFALG 283
L +N+ + + F + + + G+ LG
Sbjct: 193 DLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLG 227
>sp|O77737|BCLX_PIG Apoptosis regulator Bcl-X (Bcl-2-like 1 protein)
Length = 233
Score = 40.0 bits (92), Expect = 0.006
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Frame = +2
Query: 20 DCIKWSRVIVAFMY-----IVQVLKISQKEYDKYYNWSIELVLTKIHPWVRENGGWEHII 184
D + W R++ F + + V K Q + W + + PW++ENGGW+ +
Sbjct: 133 DGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIATWMATYLNDHLEPWIQENGGWDTFV 192
Query: 185 QL--SNSRNHLDEVTDLFKKLGTVALGITGLFALG 283
+L +N+ + + F + + + G+ LG
Sbjct: 193 ELYGNNAAAESRKGQERFNRWFLTGMTLAGVVLLG 227
>sp|Q07817|BCLX_HUMAN Apoptosis regulator Bcl-X (Bcl-2-like 1 protein)
Length = 233
Score = 39.7 bits (91), Expect = 0.008
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Frame = +2
Query: 20 DCIKWSRVIVAFMY-----IVQVLKISQKEYDKYYNWSIELVLTKIHPWVRENGGWEHII 184
D + W R++ F + + V K Q + W + + PW++ENGGW+ +
Sbjct: 133 DGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFV 192
Query: 185 QL--SNSRNHLDEVTDLFKKLGTVALGITGLFALG 283
+L +N+ + + F + + + G+ LG
Sbjct: 193 ELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLG 227
>sp|Q00709|BCL2_CHICK Apoptosis regulator Bcl-2
Length = 233
Score = 38.9 bits (89), Expect = 0.013
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 20 DCIKWSRVIVAF-----MYIVQVLKISQKEYDKYYNWSIELVLTKIHPWVRENGGWEHII 184
D + W R++ F M + V + D W E + +H W+++NGGW+ +
Sbjct: 134 DGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIATWMTEYLNRHLHNWIQDNGGWDAFV 193
Query: 185 QL 190
+L
Sbjct: 194 EL 195
>sp|P10415|BCL2_HUMAN Apoptosis regulator Bcl-2
Length = 239
Score = 38.1 bits (87), Expect = 0.022
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 20 DCIKWSRVIVAF-----MYIVQVLKISQKEYDKYYNWSIELVLTKIHPWVRENGGWEHII 184
D + W R++ F M + V + D W E + +H W+++NGGW+ +
Sbjct: 140 DGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFV 199
Query: 185 QL 190
+L
Sbjct: 200 EL 201
>sp|Q9JJV8|BCL2_CRIGR Apoptosis regulator Bcl-2
Length = 236
Score = 38.1 bits (87), Expect = 0.022
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 20 DCIKWSRVIVAF-----MYIVQVLKISQKEYDKYYNWSIELVLTKIHPWVRENGGWEHII 184
D + W R++ F M + V + D W E + +H W+++NGGW+ +
Sbjct: 137 DGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFV 196
Query: 185 QL 190
+L
Sbjct: 197 EL 198
>sp|P10417|BCL2_MOUSE Apoptosis regulator Bcl-2
Length = 236
Score = 38.1 bits (87), Expect = 0.022
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 20 DCIKWSRVIVAF-----MYIVQVLKISQKEYDKYYNWSIELVLTKIHPWVRENGGWEHII 184
D + W R++ F M + V + D W E + +H W+++NGGW+ +
Sbjct: 137 DGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFV 196
Query: 185 QL 190
+L
Sbjct: 197 EL 198
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,402,121
Number of Sequences: 369166
Number of extensions: 1587729
Number of successful extensions: 3214
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3213
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5879188535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)