Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_A06
(645 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q62893|AMHR2_RAT Anti-Muellerian hormone type II recepto... 30 4.1
sp|Q8P7Z2|SYT_XANCP Threonyl-tRNA synthetase (Threonine--tR... 30 5.3
sp|P55863|SOX3_XENLA Transcription factor SOX-3 (xSOX3) (xS... 30 5.3
sp|Q8PJE1|SYT_XANAC Threonyl-tRNA synthetase (Threonine--tR... 30 5.3
sp|Q80XC6|CN102_MOUSE Protein C14orf102 homolog 30 5.3
sp|P14606|CIGA_DICDI Cyclic AMP-inducible protein BP74 prec... 30 5.3
sp|Q5GXY0|SYT_XANOR Threonyl-tRNA synthetase (Threonine--tR... 30 5.3
sp|Q7VMC9|SYM_HAEDU Methionyl-tRNA synthetase (Methionine--... 30 7.0
sp|P41672|Y119_NPVAC Hypothetical 59.7 kDa protein in HE65-... 29 9.1
>sp|Q62893|AMHR2_RAT Anti-Muellerian hormone type II receptor precursor (AMH type II
receptor) (MIS type II receptor) (MISRII) (MRII) (C14)
Length = 557
Score = 30.4 bits (67), Expect = 4.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 121 NPNRSTAFSNYGMGTEYCNSTYSYLNSLGMANHDTPQTP 237
+P+ S+ GT++CN+ YS+L G PQ P
Sbjct: 99 HPSPSSTLFTCSCGTDFCNANYSHLPPSGNRGAPGPQEP 137
>sp|Q8P7Z2|SYT_XANCP Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
Length = 636
Score = 30.0 bits (66), Expect = 5.3
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -2
Query: 278 DDASW--SEWSVIGTSGVCGVSWLAIPSE 198
DDA+W +E ++ GVCGV W +P E
Sbjct: 432 DDATWDKAEAALRSALGVCGVEWQELPGE 460
>sp|P55863|SOX3_XENLA Transcription factor SOX-3 (xSOX3) (xSOX-11)
Length = 309
Score = 30.0 bits (66), Expect = 5.3
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 88 LDYHPEMWTYLNPNRSTAFSNYGMGTEY--CNSTYSYLNSLGMANHDTPQTPLVPMTDHS 261
L Y+P M + N + A S Y M Y +ST L S+G P +P +T H+
Sbjct: 194 LQYNPMMTSAQNAYMNAAASTYSMSPAYNQQSSTVMSLASMGSVVKSEPSSPPPAITSHT 253
Query: 262 DQ 267
+
Sbjct: 254 QR 255
>sp|Q8PJE1|SYT_XANAC Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
Length = 634
Score = 30.0 bits (66), Expect = 5.3
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -2
Query: 278 DDASW--SEWSVIGTSGVCGVSWLAIPSE 198
DDA+W +E ++ GVCGV W +P E
Sbjct: 430 DDATWDKAEAALRSALGVCGVEWQELPGE 458
>sp|Q80XC6|CN102_MOUSE Protein C14orf102 homolog
Length = 1172
Score = 30.0 bits (66), Expect = 5.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 526 QCNKPRWVLGHDREVYEFVSQL*H 455
Q +PRW GH+RE EFV + H
Sbjct: 704 QLGRPRWTKGHNREGEEFVRNVFH 727
>sp|P14606|CIGA_DICDI Cyclic AMP-inducible protein BP74 precursor
Length = 786
Score = 30.0 bits (66), Expect = 5.3
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 37 LGGGFMINNRNQTAYQPLDYHPEMWTYLNPNRSTAFSNYGMGTEYCNSTYSYLN 198
L GG +IN +P++Y+ +L+P+ T F + TE+CN + Y+N
Sbjct: 55 LSGGKIIN-------KPIEYNINWDFHLDPDSVTFFESE---TEFCNQKFQYVN 98
>sp|Q5GXY0|SYT_XANOR Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
Length = 634
Score = 30.0 bits (66), Expect = 5.3
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -2
Query: 278 DDASW--SEWSVIGTSGVCGVSWLAIPSE 198
DDA+W +E ++ GVCGV W +P E
Sbjct: 430 DDATWDKAEAALRSALGVCGVEWQELPGE 458
>sp|Q7VMC9|SYM_HAEDU Methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS)
Length = 684
Score = 29.6 bits (65), Expect = 7.0
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 139 AFSNYGMGTEYCNSTYSYLNSLGMANHDTPQTPLVPMTDHSDQDASSGSTMYRSFT 306
A YG E C STYS ++ + + + TP+V ++H D + M +++T
Sbjct: 150 AEDQYGDNCEVCASTYSPMDLINPHSVVSGATPIVKQSEHFFFDLPNFEAMLKTWT 205
>sp|P41672|Y119_NPVAC Hypothetical 59.7 kDa protein in HE65-PK2 intergenic region
precursor
Length = 530
Score = 29.3 bits (64), Expect = 9.1
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +3
Query: 309 LLLLIYLKSIVDLPSLHVCICVCGICI-DNIKAPSAKPANYNPSTAS*LVCHS*LTNSYT 485
L+++ + + VDL +H I + DN +AP +P + + CH LT +T
Sbjct: 11 LVIIAIVYTYVDLIDVHHEEVRYPITVFDNTRAPLIEPPSEIVIEGNAHECHKTLTPCFT 70
Query: 486 SLSCPNTHLGLLHCPLID 539
C GL +C L D
Sbjct: 71 HGDCDLCREGLANCQLFD 88
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,577,770
Number of Sequences: 369166
Number of extensions: 1843786
Number of successful extensions: 4612
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4608
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5267491560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)