Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_P17
(866 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61246|RS3A_FELCA 40S ribosomal protein S3a 262 8e-70
sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a 262 8e-70
sp|P49242|RS3A_RAT 40S ribosomal protein S3a (V-fos transfo... 262 1e-69
sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a 261 1e-69
sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a 259 5e-69
sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a (V-fos trans... 258 1e-68
sp|P49395|RS3A_APLCA 40S ribosomal protein S3a (Lysine-rich... 256 7e-68
sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a (EtS3a) 254 2e-67
sp|P52813|RS3A_ANOGA 40S ribosomal protein S3a (C3 protein) 245 1e-64
sp|P49396|RS3A_BRARA 40S ribosomal protein S3a (S phase-spe... 236 8e-62
>sp|P61246|RS3A_FELCA 40S ribosomal protein S3a
Length = 260
Score = 262 bits (670), Expect = 8e-70
Identities = 131/237 (55%), Positives = 173/237 (72%), Gaps = 4/237 (1%)
Frame = +2
Query: 137 EWYVIRAPSMFPKRSFARTLVSKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQ 316
+WY ++AP+MF R+ +TLV++TQGTKIAS+GLK RV +SL +L + E FRKF L
Sbjct: 25 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLI 83
Query: 317 IEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAS 496
EDVQG CLT+F GM LT DKMCSMVKKWQT IE DVKTTD + LR+F + FTKK +
Sbjct: 84 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 143
Query: 497 TQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPL 676
Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DSIGKDI K C I+PL
Sbjct: 144 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 203
Query: 677 QDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGE----IIERPDGHEPPIQTSV 835
D VRKVK+++KPK +L KLM+LHG+ +++ +TG+ +ER DG+EPP+Q SV
Sbjct: 204 HDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV 260
>sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a
Length = 264
Score = 262 bits (670), Expect = 8e-70
Identities = 131/237 (55%), Positives = 173/237 (72%), Gaps = 4/237 (1%)
Frame = +2
Query: 137 EWYVIRAPSMFPKRSFARTLVSKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQ 316
+WY ++AP+MF R+ +TLV++TQGTKIAS+GLK RV +SL +L + E FRKF L
Sbjct: 29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLI 87
Query: 317 IEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAS 496
EDVQG CLT+F GM LT DKMCSMVKKWQT IE DVKTTD + LR+F + FTKK +
Sbjct: 88 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 147
Query: 497 TQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPL 676
Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DSIGKDI K C I+PL
Sbjct: 148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207
Query: 677 QDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGE----IIERPDGHEPPIQTSV 835
D VRKVK+++KPK +L KLM+LHG+ +++ +TG+ +ER DG+EPP+Q SV
Sbjct: 208 HDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV 264
>sp|P49242|RS3A_RAT 40S ribosomal protein S3a (V-fos transformation effector protein)
[Contains: 40S ribosomal protein S3b]
Length = 264
Score = 262 bits (669), Expect = 1e-69
Identities = 131/237 (55%), Positives = 172/237 (72%), Gaps = 4/237 (1%)
Frame = +2
Query: 137 EWYVIRAPSMFPKRSFARTLVSKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQ 316
+WY ++AP+MF R+ +TLV++TQGTKIAS+GLK RV +SL +L + E FRKF L
Sbjct: 29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLI 87
Query: 317 IEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAS 496
EDVQG CLT+F GM LT DKMCSMVKKWQT IE DVKTTD + LR+F + FTKK +
Sbjct: 88 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 147
Query: 497 TQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPL 676
Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DSIGKDI K C I+PL
Sbjct: 148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207
Query: 677 QDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGE----IIERPDGHEPPIQTSV 835
D VRKVK+++KPK +L KLM+LHG+ ++ +TG+ +ER DG+EPP+Q SV
Sbjct: 208 HDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGYEPPVQESV 264
>sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a
Length = 264
Score = 261 bits (668), Expect = 1e-69
Identities = 132/237 (55%), Positives = 170/237 (71%), Gaps = 4/237 (1%)
Frame = +2
Query: 137 EWYVIRAPSMFPKRSFARTLVSKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQ 316
+WY ++AP+MF R+ +TLV++TQGTKIAS+GLK RV +SL +L + E FRKF L
Sbjct: 29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLI 87
Query: 317 IEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAS 496
EDVQG CLT+F GM LT DKMCSMVKKWQT IE DVKTTD + LR+F + FTKK +
Sbjct: 88 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 147
Query: 497 TQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPL 676
Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DSIGKDI K C I+PL
Sbjct: 148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207
Query: 677 QDCCVRKVKVIRKPKMDLTKLMDLHGDSAT----AITSTGEIIERPDGHEPPIQTSV 835
D VRKVK+++KPK +L KLM+LHG+ + A TG +ER DG+EPP+Q SV
Sbjct: 208 HDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYEPPVQESV 264
>sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a
Length = 257
Score = 259 bits (663), Expect = 5e-69
Identities = 131/233 (56%), Positives = 168/233 (72%)
Frame = +2
Query: 137 EWYVIRAPSMFPKRSFARTLVSKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQ 316
EWY I+AP+MF R +TL+++TQGTKIASEGLK RV +SLG+LN D FRKF L
Sbjct: 27 EWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDLNNSEAD-FRKFKLI 85
Query: 317 IEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAS 496
EDVQG LT+F M +T DK+CS+VKKW T IE VKTTD + LRVFVIAFTKK+
Sbjct: 86 AEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSV 145
Query: 497 TQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPL 676
Q+KK +Y + +I+ IR M I E++ CD+KEVV KL DSIGKDI K CS ++PL
Sbjct: 146 NQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPL 205
Query: 677 QDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGEIIERPDGHEPPIQTSV 835
Q+ +RKVK+I++PK+DL +L DLHGDS T + + GE ++RPD +EPP+Q V
Sbjct: 206 QEVYIRKVKIIKRPKVDLGRLHDLHGDSIT-VGADGEKVDRPDDYEPPVQQEV 257
>sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a (V-fos transformation effector protein)
Length = 266
Score = 258 bits (659), Expect = 1e-68
Identities = 130/239 (54%), Positives = 169/239 (70%), Gaps = 6/239 (2%)
Frame = +2
Query: 137 EWYVIRAPSMFPKRSFARTLVSKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQ 316
+WY ++AP+MF R+ +TLV++TQGTKIAS+GLK RV +SL +L + E FRKF L
Sbjct: 29 DWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLI 87
Query: 317 IEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAS 496
EDVQG CLT+F GM LT DKMCSMVKKWQT IE DVKTTD + LR+F + FTKK +
Sbjct: 88 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 147
Query: 497 TQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPL 676
Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DS+GKDI K C I+PL
Sbjct: 148 NQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPL 207
Query: 677 QDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITS------TGEIIERPDGHEPPIQTSV 835
D VRKVK+++KPK +L KLM+LHG+ + TG +ER DG+EPPIQ +V
Sbjct: 208 HDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVERADGYEPPIQETV 266
>sp|P49395|RS3A_APLCA 40S ribosomal protein S3a (Lysine-rich protein KRP-A)
Length = 265
Score = 256 bits (653), Expect = 7e-68
Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 5/238 (2%)
Frame = +2
Query: 137 EWYVIRAPSMFPKRSFARTLVSKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQ 316
EWY ++APSMF R +TLV+++QGTKIAS+ LK RV +SL +L + E TFRKF L
Sbjct: 29 EWYDVKAPSMFAVRQIGKTLVTRSQGTKIASDNLKGRVFEVSLADL-QNDEVTFRKFKLI 87
Query: 317 IEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAS 496
E+VQG LT+F GM LT DK+CSMVKKWQT IE DVKTTD + LRVF I FTKK +
Sbjct: 88 AEEVQGRNVLTNFSGMSLTRDKLCSMVKKWQTLIEANVDVKTTDGYLLRVFAIGFTKKRN 147
Query: 497 TQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPL 676
Q+KK YAQ Q+K+IR M E+++ E+SS D+KEVV KL DSIGKDI K C I+PL
Sbjct: 148 NQVKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPL 207
Query: 677 QDCCVRKVKVIRKPKMDLTKLMDLHGDSAT----AITST-GEIIERPDGHEPPIQTSV 835
D + KVKV++KPK D+ KLM+LHG+ +T +TS GE ++R DG+EPP+ +V
Sbjct: 208 HDVLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDRVDGYEPPVLQNV 265
>sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a (EtS3a)
Length = 264
Score = 254 bits (650), Expect = 2e-67
Identities = 130/237 (54%), Positives = 168/237 (70%), Gaps = 4/237 (1%)
Frame = +2
Query: 137 EWYVIRAPSMFPKRSFARTLVSKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQ 316
+WY ++AP+MF R+ +TLV++TQGTKIAS+GLK RV +SL +L + E FRKF L
Sbjct: 29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLI 87
Query: 317 IEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAS 496
EDVQG CLT+F GM LT DKM SMVKKWQT IE DVKTTD + LR+F + FTKK +
Sbjct: 88 TEDVQGKNCLTNFHGMDLTRDKMFSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 147
Query: 497 TQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPL 676
Q++K +YAQ QQ++ IR M E++ E + D+KEVV KL DSIGKDI K C I+PL
Sbjct: 148 NQIRKTSYAQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207
Query: 677 QDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGE----IIERPDGHEPPIQTSV 835
D VRKVK+++KPK +L KLM+LHG+ A +G+ +ER DG+EPP+Q SV
Sbjct: 208 HDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVERADGYEPPVQESV 264
>sp|P52813|RS3A_ANOGA 40S ribosomal protein S3a (C3 protein)
Length = 269
Score = 245 bits (625), Expect = 1e-64
Identities = 130/241 (53%), Positives = 163/241 (67%), Gaps = 8/241 (3%)
Frame = +2
Query: 137 EWYVIRAPSMFPKRSFARTLVSKTQGTKIASEGLKNRVVTMSLGELNEK--TEDTFRKFS 310
+WY ++AP+MF R +TLV++TQGTKIAS+GLK RV +SL +L + E +FRKF
Sbjct: 29 DWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDAERSFRKFK 88
Query: 311 LQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKK 490
L E V G LT+F GM LTTDK+ SMV KWQT IEC DVKTTD F LRVF I FT K
Sbjct: 89 LVAESVNGRDVLTNFHGMALTTDKLRSMVNKWQTLIECSVDVKTTDGFMLRVFCIGFTIK 148
Query: 491 ASTQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIF 670
S +K YAQ QIK+IR M +I EI+S D+K VV+KL DSI KDI K C ++
Sbjct: 149 DSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVY 208
Query: 671 PLQDCCVRKVKVIRKPKMDLTKLMDLHGDSA--TAITSTGE----IIERPDGHEPPIQTS 832
PL D +RKVKV++KP+ DL+ LM+LHGD A STG ++ RP+G+EPP+Q S
Sbjct: 209 PLHDVYIRKVKVLKKPRFDLSSLMELHGDGGGKAAEVSTGAASGVVVVRPEGYEPPVQAS 268
Query: 833 V 835
V
Sbjct: 269 V 269
>sp|P49396|RS3A_BRARA 40S ribosomal protein S3a (S phase-specific protein BIS289)
Length = 262
Score = 236 bits (601), Expect = 8e-62
Identities = 121/223 (54%), Positives = 157/223 (70%), Gaps = 1/223 (0%)
Frame = +2
Query: 137 EWYVIRAPSMFPKRSFARTLVSKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQ 316
+WY I+APS F R+ +TLVS+TQGTKIASEGLK+RV +SL +LN+ + +RK L+
Sbjct: 28 DWYDIKAPSSFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLNKDEDQAYRKIRLR 87
Query: 317 IEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAS 496
EDVQG LT F GM TTDK+ S+VKKWQT IE DVKTTDN+ LR+F IAFTK+ +
Sbjct: 88 AEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRLFCIAFTKRRA 147
Query: 497 TQLKKHTYAQAQQIKSIRDIMREV-INAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFP 673
Q+K+ YAQ+ QI+ IR MRE+ I E SSCD+KE+V K +SIGKDI K I+P
Sbjct: 148 NQVKRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYP 207
Query: 674 LQDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGEIIERP 802
LQ+ +RKVK+++ PK DL KLM++HGD G ++RP
Sbjct: 208 LQNVFIRKVKILKAPKFDLRKLMEVHGDYTA--EDVGVKVDRP 248
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,021,438
Number of Sequences: 369166
Number of extensions: 1840668
Number of successful extensions: 4581
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4537
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)