Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_P13
(371 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07901|HS90A_MOUSE Heat shock protein HSP 90-alpha (HSP ... 104 6e-23
sp|P46633|HS90A_CRIGR Heat shock protein HSP 90-alpha (HSP 86) 104 6e-23
sp|O02192|HSP83_DROAV Heat shock protein 83 (HSP 82) 104 7e-23
sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86) 103 9e-23
sp|P02828|HSP83_DROME Heat shock protein 83 (HSP 82) 103 9e-23
sp|P08238|HS90B_HUMAN Heat shock protein HSP 90-beta (HSP 8... 102 2e-22
sp|Q9GKX8|HS90B_HORSE Heat shock protein HSP 90-beta (HSP 84) 102 3e-22
sp|O02705|HS90A_PIG Heat shock protein HSP 90-alpha (HSP 86) 102 3e-22
sp|P11499|HS90B_MOUSE Heat shock protein HSP 90-beta (HSP 8... 102 3e-22
sp|P11501|HS90A_CHICK Heat shock protein HSP 90-alpha 101 5e-22
>sp|P07901|HS90A_MOUSE Heat shock protein HSP 90-alpha (HSP 86) (Tumor specific
transplantation 86 kDa antigen) (TSTA)
Length = 733
Score = 104 bits (260), Expect = 6e-23
Identities = 53/90 (58%), Positives = 70/90 (77%), Gaps = 3/90 (3%)
Frame = +2
Query: 2 TLKARVDADKNDNSVKDLVMLLYETSLLSSGFTLKDPQVHGNRIHRMIKLGLGIEDDDVE 181
TL+ + +ADKND SVKDLV+LLYET+LLSSGF+L+DPQ H NRI+RMIKLGLGI++DD
Sbjct: 646 TLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPT 705
Query: 182 MDATEAG---DVPVVASTAEEDAGKMEEVD 262
+D T A ++P + ++D +MEEVD
Sbjct: 706 VDDTSAAVTEEMPPL--EGDDDTSRMEEVD 733
>sp|P46633|HS90A_CRIGR Heat shock protein HSP 90-alpha (HSP 86)
Length = 733
Score = 104 bits (260), Expect = 6e-23
Identities = 53/90 (58%), Positives = 70/90 (77%), Gaps = 3/90 (3%)
Frame = +2
Query: 2 TLKARVDADKNDNSVKDLVMLLYETSLLSSGFTLKDPQVHGNRIHRMIKLGLGIEDDDVE 181
TL+ + +ADKND SVKDLV+LLYET+LLSSGF+L+DPQ H NRI+RMIKLGLGI++DD
Sbjct: 646 TLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPT 705
Query: 182 MDATEAG---DVPVVASTAEEDAGKMEEVD 262
+D T A ++P + ++D +MEEVD
Sbjct: 706 VDDTSAAVTEEMPPL--EGDDDTSRMEEVD 733
>sp|O02192|HSP83_DROAV Heat shock protein 83 (HSP 82)
Length = 716
Score = 104 bits (259), Expect = 7e-23
Identities = 55/89 (61%), Positives = 67/89 (75%), Gaps = 2/89 (2%)
Frame = +2
Query: 2 TLKARVDADKNDNSVKDLVMLLYETSLLSSGFTLKDPQVHGNRIHRMIKLGLGIEDDD-- 175
TL+ + DADKND +VKDLV+LL+ETSLLSSGF+L PQVH +RI+RMIKLGLGI++D+
Sbjct: 629 TLRQKADADKNDKAVKDLVILLFETSLLSSGFSLDSPQVHASRIYRMIKLGLGIDEDEPM 688
Query: 176 VEMDATEAGDVPVVASTAEEDAGKMEEVD 262
DA AGD P + EDA MEEVD
Sbjct: 689 TTEDAQSAGDAPSLVEDT-EDASHMEEVD 716
>sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86)
Length = 732
Score = 103 bits (258), Expect = 9e-23
Identities = 53/90 (58%), Positives = 69/90 (76%), Gaps = 3/90 (3%)
Frame = +2
Query: 2 TLKARVDADKNDNSVKDLVMLLYETSLLSSGFTLKDPQVHGNRIHRMIKLGLGIEDDDVE 181
TL+ + +ADKND SVKDLV+LLYET+LLSSGF+L+DPQ H NRI+RMIKLGLGI++DD
Sbjct: 645 TLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPT 704
Query: 182 MDATEAG---DVPVVASTAEEDAGKMEEVD 262
D T A ++P + ++D +MEEVD
Sbjct: 705 ADDTSAAVTEEMPPL--EGDDDTSRMEEVD 732
>sp|P02828|HSP83_DROME Heat shock protein 83 (HSP 82)
Length = 717
Score = 103 bits (258), Expect = 9e-23
Identities = 55/89 (61%), Positives = 67/89 (75%), Gaps = 2/89 (2%)
Frame = +2
Query: 2 TLKARVDADKNDNSVKDLVMLLYETSLLSSGFTLKDPQVHGNRIHRMIKLGLGIEDDD-- 175
TL+ + DADKND +VKDLV+LL+ETSLLSSGF+L PQVH +RI+RMIKLGLGI++D+
Sbjct: 630 TLRQKADADKNDKAVKDLVILLFETSLLSSGFSLDSPQVHASRIYRMIKLGLGIDEDEPM 689
Query: 176 VEMDATEAGDVPVVASTAEEDAGKMEEVD 262
DA AGD P + EDA MEEVD
Sbjct: 690 TTDDAQSAGDAPSLVEDT-EDASHMEEVD 717
>sp|P08238|HS90B_HUMAN Heat shock protein HSP 90-beta (HSP 84) (HSP 90)
Length = 724
Score = 102 bits (255), Expect = 2e-22
Identities = 52/90 (57%), Positives = 71/90 (78%), Gaps = 3/90 (3%)
Frame = +2
Query: 2 TLKARVDADKNDNSVKDLVMLLYETSLLSSGFTLKDPQVHGNRIHRMIKLGLGIEDDDV- 178
TL+ + +ADKND +VKDLV+LL+ET+LLSSGF+L+DPQ H NRI+RMIKLGLGI++D+V
Sbjct: 637 TLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVA 696
Query: 179 --EMDATEAGDVPVVASTAEEDAGKMEEVD 262
E +A ++P + +EDA +MEEVD
Sbjct: 697 AEEPNAAVPDEIPPL--EGDEDASRMEEVD 724
>sp|Q9GKX8|HS90B_HORSE Heat shock protein HSP 90-beta (HSP 84)
Length = 724
Score = 102 bits (254), Expect = 3e-22
Identities = 52/90 (57%), Positives = 70/90 (77%), Gaps = 3/90 (3%)
Frame = +2
Query: 2 TLKARVDADKNDNSVKDLVMLLYETSLLSSGFTLKDPQVHGNRIHRMIKLGLGIEDDDV- 178
TL+ + +ADKND +VKDLV+LL+ET+LLSSGF+L+DPQ H NRI+RMIKLGLGI++D+V
Sbjct: 637 TLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVA 696
Query: 179 --EMDATEAGDVPVVASTAEEDAGKMEEVD 262
E A ++P + +EDA +MEEVD
Sbjct: 697 AEEPSAAVPDEIPPL--EGDEDASRMEEVD 724
>sp|O02705|HS90A_PIG Heat shock protein HSP 90-alpha (HSP 86)
Length = 733
Score = 102 bits (254), Expect = 3e-22
Identities = 52/90 (57%), Positives = 69/90 (76%), Gaps = 3/90 (3%)
Frame = +2
Query: 2 TLKARVDADKNDNSVKDLVMLLYETSLLSSGFTLKDPQVHGNRIHRMIKLGLGIEDDDVE 181
TL+ + +ADKND SVKDLV+LLYET+LLSSGF+L+DPQ H NRI+RMIKLGLGI++DD
Sbjct: 646 TLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPT 705
Query: 182 MDATEAG---DVPVVASTAEEDAGKMEEVD 262
D + A ++P + ++D +MEEVD
Sbjct: 706 ADDSSAAVTEEMPPL--EGDDDTSRMEEVD 733
>sp|P11499|HS90B_MOUSE Heat shock protein HSP 90-beta (HSP 84) (Tumor-specific
transplantation 84 kDa antigen) (TSTA)
Length = 724
Score = 102 bits (254), Expect = 3e-22
Identities = 52/90 (57%), Positives = 70/90 (77%), Gaps = 3/90 (3%)
Frame = +2
Query: 2 TLKARVDADKNDNSVKDLVMLLYETSLLSSGFTLKDPQVHGNRIHRMIKLGLGIEDDDV- 178
TL+ + +ADKND +VKDLV+LL+ET+LLSSGF+L+DPQ H NRI+RMIKLGLGI++D+V
Sbjct: 637 TLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVT 696
Query: 179 --EMDATEAGDVPVVASTAEEDAGKMEEVD 262
E A ++P + +EDA +MEEVD
Sbjct: 697 AEEPSAAVPDEIPPL--EGDEDASRMEEVD 724
>sp|P11501|HS90A_CHICK Heat shock protein HSP 90-alpha
Length = 728
Score = 101 bits (252), Expect = 5e-22
Identities = 51/88 (57%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Frame = +2
Query: 2 TLKARVDADKNDNSVKDLVMLLYETSLLSSGFTLKDPQVHGNRIHRMIKLGLGIEDDDVE 181
TL+ + +ADKND SVKDLV+LLYET+LLSSGF+L+DPQ H NRI+RMIKLGLGI++DD
Sbjct: 641 TLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDTA 700
Query: 182 M-DATEAGDVPVVASTAEEDAGKMEEVD 262
+A+ A + ++D +MEEVD
Sbjct: 701 AEEASPAVTEEMPPLEGDDDTSRMEEVD 728
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,977,196
Number of Sequences: 369166
Number of extensions: 520659
Number of successful extensions: 1708
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1686
length of database: 68,354,980
effective HSP length: 90
effective length of database: 51,728,830
effective search space used: 1707051390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)