Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_P04
(530 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (... 83 5e-16
sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (... 83 5e-16
sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Ra... 83 5e-16
sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha (... 83 5e-16
sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (... 82 8e-16
sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (... 82 8e-16
sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (... 81 1e-15
sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab... 75 8e-14
sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (R... 75 8e-14
sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta (Rab... 74 2e-13
>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 82.8 bits (203), Expect = 5e-16
Identities = 37/53 (69%), Positives = 42/53 (79%)
Frame = +2
Query: 26 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 184
DLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 385 DLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (SMG p25A
GDI)
Length = 447
Score = 82.8 bits (203), Expect = 5e-16
Identities = 37/53 (69%), Positives = 42/53 (79%)
Frame = +2
Query: 26 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 184
DLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 385 DLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 82.8 bits (203), Expect = 5e-16
Identities = 37/53 (69%), Positives = 42/53 (79%)
Frame = +2
Query: 26 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 184
DLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 385 DLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 82.8 bits (203), Expect = 5e-16
Identities = 37/53 (69%), Positives = 42/53 (79%)
Frame = +2
Query: 26 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 184
DLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 385 DLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (XAP-4)
(Oligophrenin-2)
Length = 447
Score = 82.0 bits (201), Expect = 8e-16
Identities = 36/53 (67%), Positives = 42/53 (79%)
Frame = +2
Query: 26 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 184
DLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR G+ FDF ++ K
Sbjct: 385 DLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRK 437
>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 82.0 bits (201), Expect = 8e-16
Identities = 36/53 (67%), Positives = 42/53 (79%)
Frame = +2
Query: 26 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 184
DLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR G+ FDF ++ K
Sbjct: 385 DLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRK 437
>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 81.3 bits (199), Expect = 1e-15
Identities = 36/53 (67%), Positives = 41/53 (77%)
Frame = +2
Query: 26 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 184
DLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR G FDF ++ K
Sbjct: 385 DLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGMAFDFENMKRK 437
>sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 75.5 bits (184), Expect = 8e-14
Identities = 32/53 (60%), Positives = 43/53 (81%)
Frame = +2
Query: 26 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 184
DL+ P D G +S++F+S +YDATTHFETTC D+ D+YKR TGSEFDF +++ K
Sbjct: 385 DLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKRK 437
>sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 75.5 bits (184), Expect = 8e-14
Identities = 32/53 (60%), Positives = 43/53 (81%)
Frame = +2
Query: 26 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 184
DL+ P D G +S++F+S +YDATTHFETTC D+ D+YKR TGSEFDF +++ K
Sbjct: 385 DLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKRK 437
>sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 73.9 bits (180), Expect = 2e-13
Identities = 32/53 (60%), Positives = 42/53 (79%)
Frame = +2
Query: 26 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 184
DL P D G +S++F+S +YDATTHFETTC D+ D+YKR TGSEFDF +++ K
Sbjct: 385 DLLVPKDLGTDSQIFISRTYDATTHFETTCGDIKDIYKRMTGSEFDFEEMKRK 437
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,461,014
Number of Sequences: 369166
Number of extensions: 1039332
Number of successful extensions: 3036
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3033
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)