Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_O23
(270 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8EFV4|UVRC_SHEON UvrABC system protein C (UvrC protein)... 30 1.7
sp|P81294|MPAJ1_JUNAS Major pollen allergen Jun a 1 precursor 29 3.0
sp|Q02597|POLG_TUMVQ Genome polyprotein [Contains: P1 prote... 29 3.9
sp|P89509|POLG_TUMVJ Genome polyprotein [Contains: P1 prote... 28 5.1
sp|Q96385|MPAC1_CHAOB Major pollen allergen Cha o 1 precursor 28 5.1
sp|Q9LLT1|MPAJ1_JUNVI Major pollen allergen Jun v 1 precursor 28 8.7
>sp|Q8EFV4|UVRC_SHEON UvrABC system protein C (UvrC protein) (Excinuclease ABC subunit C)
Length = 609
Score = 30.0 bits (66), Expect = 1.7
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +3
Query: 60 GNICLMLLDISALKVVSFGIHGCSSKIYGQTCFSVLLKTVILQNSPDYLNA-----VPR* 224
G C LL I K+ FG + QT +L++ +LQ YLNA +P+
Sbjct: 261 GIACFHLLFIREGKI--FGSRSYYPTVPAQTDIEEVLRSFLLQF---YLNADIQRTIPKE 315
Query: 225 IIISHHF 245
++ISHHF
Sbjct: 316 VVISHHF 322
>sp|P81294|MPAJ1_JUNAS Major pollen allergen Jun a 1 precursor
Length = 367
Score = 29.3 bits (64), Expect = 3.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 54 GHGNICLMLLDISALKVVSFGIHGCSSKIYGQTCFS 161
G+G CL + +S + + S IHGC++ + G S
Sbjct: 123 GNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVS 158
>sp|Q02597|POLG_TUMVQ Genome polyprotein [Contains: P1 proteinase (N-terminal protein);
Helper component proteinase (HC-pro); Protein P3; 6 kDa
protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6
kDa protein 2 (6K2); Viral genome-linked protein (VPg);
Nuclear inclusion protein A (NI-a) (NIa) (NIa-pro) (49
kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B
(NI-b) (NIb) (RNA-directed RNA polymerase); Coat protein
(CP)]
Length = 3163
Score = 28.9 bits (63), Expect = 3.9
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 269 KQLNSFIHKMMGNYNLSRDSIQIIWRVLQYNCFEEN*KTSLSIN 138
KQ +++ +M +Y L+ D +QII L+ C E TS +IN
Sbjct: 2984 KQFDTWFEGVMADYELTEDKMQIILNGLRVWCIENG--TSPNIN 3025
>sp|P89509|POLG_TUMVJ Genome polyprotein [Contains: P1 proteinase (N-terminal protein);
Helper component proteinase (HC-pro); Protein P3; 6 kDa
protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6
kDa protein 2 (6K2); Viral genome-linked protein (VPg);
Nuclear inclusion protein A (NI-a) (NIa) (NIa-pro) (49
kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B
(NI-b) (NIb) (RNA-directed RNA polymerase); Coat protein
(CP)]
Length = 3164
Score = 28.5 bits (62), Expect = 5.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 269 KQLNSFIHKMMGNYNLSRDSIQIIWRVLQYNCFEEN*KTSLSIN 138
KQ +++ +M +Y L+ D +QII L C E TS +IN
Sbjct: 2985 KQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENG--TSPNIN 3026
>sp|Q96385|MPAC1_CHAOB Major pollen allergen Cha o 1 precursor
Length = 375
Score = 28.5 bits (62), Expect = 5.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 54 GHGNICLMLLDISALKVVSFGIHGCSSKIYGQTCFS 161
G+G CL + +S + + IHGC++ + G S
Sbjct: 123 GNGGPCLFMRTVSHVILHGLNIHGCNTSVSGNVLIS 158
>sp|Q9LLT1|MPAJ1_JUNVI Major pollen allergen Jun v 1 precursor
Length = 367
Score = 27.7 bits (60), Expect = 8.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 54 GHGNICLMLLDISALKVVSFGIHGCSSKIYGQTCFS 161
G+G CL + +S + + IHGC++ + G S
Sbjct: 123 GNGGPCLFMRKVSHVILHGLHIHGCNTSVLGDVLVS 158
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,503,027
Number of Sequences: 369166
Number of extensions: 542192
Number of successful extensions: 1455
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 68,354,980
effective HSP length: 59
effective length of database: 57,455,615
effective search space used: 1723668450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)