Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_O17
(725 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O14207|YDT2_SCHPO Hypothetical protein C6B12.02c in chro... 32 2.3
sp|Q6B2C0|MTAL2_YEAST Mating-type protein ALPHA2 (MATalpha2... 31 3.9
sp|P48602|VATA1_DROME Vacuolar ATP synthase catalytic subun... 30 5.0
sp|P20646|PPAP_RAT Prostatic acid phosphatase precursor 30 5.0
sp|Q7NB79|MRAW_MYCGA S-adenosyl-methyltransferase mraW 30 8.6
>sp|O14207|YDT2_SCHPO Hypothetical protein C6B12.02c in chromosome I
Length = 1888
Score = 31.6 bits (70), Expect = 2.3
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -1
Query: 683 FSLEQFIFLTTNKLKSNNELIVNILPYFFKKKLISLSFLEDSKYIW*LESELK*GKVE*T 504
F+++ +F T KLK E ++ LPYF + + L L + L S++ G V
Sbjct: 717 FNIQDDVFKTFEKLKDTFETVLENLPYFTNSETVDLYNLLSFCSAFILHSQVSMGLVNLA 776
Query: 503 NSF 495
+SF
Sbjct: 777 SSF 779
>sp|Q6B2C0|MTAL2_YEAST Mating-type protein ALPHA2 (MATalpha2 protein) (Alpha-2 repressor)
Length = 210
Score = 30.8 bits (68), Expect = 3.9
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -3
Query: 213 IEIRNSLGSLSEYNSNSVTWIEYSKL---TSQVFSPISLLIKQFLSIIPSFANVSL 55
+E+R+ LG LS N N E KL TSQ+ + I++L+K+ SI +N L
Sbjct: 49 VELRDILGFLSRANKNRKISDEEKKLLQTTSQLTTTITVLLKEMRSIENDRSNYQL 104
>sp|P48602|VATA1_DROME Vacuolar ATP synthase catalytic subunit A isoform 1 (V-ATPase A
subunit 1) (Vacuolar proton pump alpha subunit 1)
(V-ATPase 69 kDa subunit 1)
Length = 614
Score = 30.4 bits (67), Expect = 5.0
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Frame = +2
Query: 23 PVIYGSIKDGIKETLANDGIIDKNCFMSKDIG------EKTWE---VNLLYSIHVTELEL 175
P I GSI DGI+ L + G++ + ++ K + + WE +N+ H+T +L
Sbjct: 90 PGIMGSIFDGIQRPLRDIGVMTNSIYIPKGVNTTALSRSEMWEFNPLNVRVGSHITGGDL 149
Query: 176 YS---DNDPSELRISITSQTKKT 235
Y +N + R+ + + K T
Sbjct: 150 YGVVHENTLVKQRMIVAPRAKGT 172
>sp|P20646|PPAP_RAT Prostatic acid phosphatase precursor
Length = 381
Score = 30.4 bits (67), Expect = 5.0
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 149 SIHVTELELYSDNDPSELRISITSQTKKTKFPVAAKSCANGCKIPIKKDAE 301
S H+ +ELY DN + + + ++T+ +P+ C + C P++K AE
Sbjct: 311 SCHI--MELYQDNGGTFVEMYYRNETQNEPYPLTLPGCTHSC--PLEKFAE 357
>sp|Q7NB79|MRAW_MYCGA S-adenosyl-methyltransferase mraW
Length = 317
Score = 29.6 bits (65), Expect = 8.6
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +2
Query: 2 VNVAKNKPVIYGSIKDGIKETLANDGIIDKNCFMSKDIGEKTWEVNLLYSIHVTELELYS 181
V + KN YG IKD + +A K F K++ T EV L HV + ELY+
Sbjct: 156 VKIMKN----YGEIKDPYRVVVAL-----KKAFEKKELN--TLEVVELIKKHVNKAELYA 204
Query: 182 DNDPSE-----LRISITSQ 223
+ P+ LRI++ ++
Sbjct: 205 NKHPARRYFQALRIAVNNE 223
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,716,536
Number of Sequences: 369166
Number of extensions: 1103322
Number of successful extensions: 3008
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3007
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6510836890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)