Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_O10
(142 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P54578|UBP14_HUMAN Ubiquitin carboxyl-terminal hydrolase... 45 4e-05
sp|P60051|UBP14_PANTR Ubiquitin carboxyl-terminal hydrolase... 45 4e-05
sp|P40826|UBP14_RABIT Ubiquitin carboxyl-terminal hydrolase... 45 7e-05
sp|Q9JMA1|UBP14_MOUSE Ubiquitin carboxyl-terminal hydrolase... 44 1e-04
sp|Q17361|UBP14_CAEEL Ubiquitin carboxyl-terminal hydrolase... 33 0.15
>sp|P54578|UBP14_HUMAN Ubiquitin carboxyl-terminal hydrolase 14 (Ubiquitin thiolesterase
14) (Ubiquitin-specific processing protease 14)
(Deubiquitinating enzyme 14)
Length = 494
Score = 45.4 bits (106), Expect = 4e-05
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +2
Query: 11 WDGIRLKDGITLMMMGTCDDLSLGEINKPKFIEDMTESQITKAL 142
W I++K+G+TL+MMG+ D L K F+EDMTE Q+ A+
Sbjct: 58 WGNIKIKNGMTLLMMGSADALPEEPSAKTVFVEDMTEEQLASAM 101
>sp|P60051|UBP14_PANTR Ubiquitin carboxyl-terminal hydrolase 14 (Ubiquitin thiolesterase
14) (Ubiquitin-specific processing protease 14)
(Deubiquitinating enzyme 14)
Length = 493
Score = 45.4 bits (106), Expect = 4e-05
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +2
Query: 11 WDGIRLKDGITLMMMGTCDDLSLGEINKPKFIEDMTESQITKAL 142
W I++K+G+TL+MMG+ D L K F+EDMTE Q+ A+
Sbjct: 58 WGNIKIKNGMTLLMMGSADALPEEPSAKTVFVEDMTEEQLASAM 101
>sp|P40826|UBP14_RABIT Ubiquitin carboxyl-terminal hydrolase 14 (Ubiquitin thiolesterase
14) (Ubiquitin-specific processing protease 14)
(Deubiquitinating enzyme 14)
Length = 493
Score = 44.7 bits (104), Expect = 7e-05
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = +2
Query: 11 WDGIRLKDGITLMMMGTCDDLSLGEINKPKFIEDMTESQITKAL 142
W I++K+G+T++MMG+ D L K F+EDMTE Q+ A+
Sbjct: 58 WGNIKIKNGMTILMMGSADALPEEPSAKTVFVEDMTEEQLASAM 101
>sp|Q9JMA1|UBP14_MOUSE Ubiquitin carboxyl-terminal hydrolase 14 (Ubiquitin thiolesterase
14) (Ubiquitin-specific processing protease 14)
(Deubiquitinating enzyme 14)
Length = 493
Score = 43.9 bits (102), Expect = 1e-04
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = +2
Query: 11 WDGIRLKDGITLMMMGTCDDLSLGEINKPKFIEDMTESQITKAL 142
W I++K+G+T++MMG+ D L K F+EDMTE Q+ A+
Sbjct: 58 WGNIKMKNGMTVLMMGSADALPEEPSAKTVFVEDMTEEQLATAM 101
>sp|Q17361|UBP14_CAEEL Ubiquitin carboxyl-terminal hydrolase 14 (Ubiquitin thiolesterase
14) (Ubiquitin-specific processing protease 14)
(Deubiquitinating enzyme 14)
Length = 489
Score = 33.5 bits (75), Expect = 0.15
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 11 WDGIRLKDGITLMMMGTCDDLSLGEINKPKFIEDMTESQITK 136
W+GI +K+ +T+MMMG S+GEI KP + + ++ K
Sbjct: 55 WEGITIKENMTIMMMG-----SVGEIPKPPTVLEKKQANRDK 91
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,718,575
Number of Sequences: 369166
Number of extensions: 190172
Number of successful extensions: 485
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 68,354,980
effective HSP length: 20
effective length of database: 64,660,280
effective search space used: 1681167280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)