Planarian EST Database


Dr_sW_005_N15

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_005_N15
         (992 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8UVX0|PIWI_BRARE  Piwi protein                                273   7e-73
sp|Q9VKM1|PIWI_DROME  Piwi protein                                179   8e-45
sp|O77503|I2C2_RABIT  Eukaryotic translation initiation fact...   135   2e-31
sp|Q9UKV8|I2C2_HUMAN  Eukaryotic translation initiation fact...   135   2e-31
sp|Q8CJG0|I2C2_MOUSE  Eukaryotic translation initiation fact...   134   3e-31
sp|Q9H9G7|I2C3_HUMAN  Eukaryotic translation initiation fact...   134   5e-31
sp|Q8CJF9|I2C3_MOUSE  Eukaryotic translation initiation fact...   134   5e-31
sp|Q9QZ81|I2C2_RAT  Eukaryotic translation initiation factor...   133   7e-31
sp|Q8CJF8|I2C4_MOUSE  Eukaryotic translation initiation fact...   132   1e-30
sp|Q9HCK5|I2C4_HUMAN  Eukaryotic translation initiation fact...   130   4e-30
>sp|Q8UVX0|PIWI_BRARE Piwi protein
          Length = 858

 Score =  273 bits (697), Expect = 7e-73
 Identities = 132/286 (46%), Positives = 183/286 (63%)
 Frame = +3

Query: 3    ILSAVREDRYNAIKKFCYVDCPVPSQVVLAQTLKEGPKLNSVAVNIALQINAKLGGELWA 182
            IL   R+D+Y+ +KK+  VDCP PSQ V+++T+ +   L +VA  IALQ+N K+GGELW+
Sbjct: 556  ILPTNRKDKYDCVKKYLCVDCPTPSQCVVSRTISKPQALMTVATKIALQMNCKMGGELWS 615

Query: 183  VKIPIKKFMVVGLDVWHDAKXXXXXXXXXXXXTNALCTRWFSKSHLQEHDKEIVYVLQSC 362
            V+IP+++ M+VG+D +HD               N   +RWFSK  LQ   +EI+  L+  
Sbjct: 616  VEIPLRQLMIVGIDCYHDTAAGKRSIGAMVASLNQGMSRWFSKCVLQNRGQEIIDALKGS 675

Query: 363  MLSLLKAYFEENNFLPDTIFMYRDGVSDGQLGYVQKTEIEQFFKVFESFSADYKPNMVYN 542
            +   LKAY + NN LP  I +YRDGV DG L  V   E+ Q  +  ++   DY+P +   
Sbjct: 676  LQGALKAYLKYNNSLPSRIIVYRDGVGDGMLQSVVDYEVPQIMQSIKTMGQDYEPKLSVV 735

Query: 543  VVQKRINTRLYVSDPKNKGQVNNPNPGTIVDHTVTRANLYDFFLVSQSVRQGTVTPTHYV 722
            VV+KRI++R +    +  G++ NP PGT++D  VTR   YDFF+VSQ+VR G V PTHY 
Sbjct: 736  VVKKRISSRFFA---RIDGKIANPPPGTVIDTEVTRPEWYDFFIVSQAVRFGCVAPTHYN 792

Query: 723  VLCDNSRYTPHQVQLMAYKTCHIYYNWPGTVRVPAPCMYAHKLAYM 860
            V+ DNS   P  +Q + YK CH+YYNW G VRVPAPC YAHKLA++
Sbjct: 793  VVFDNSGLKPDHMQRLTYKLCHMYYNWQGIVRVPAPCQYAHKLAFL 838
>sp|Q9VKM1|PIWI_DROME Piwi protein
          Length = 843

 Score =  179 bits (455), Expect = 8e-45
 Identities = 110/297 (37%), Positives = 156/297 (52%), Gaps = 7/297 (2%)
 Frame = +3

Query: 24   DRYNAIKKFCYVDCPVPSQVVLAQTLKEGPKLNSVAVNIALQINAKLGGELWAVKIPIKK 203
            +RY++IKK  YVD  VP+QVV  +T K    L S+A  IA+Q+N KLG   W +++P+  
Sbjct: 549  ERYSSIKKRGYVDRAVPTQVVTLKTTKNR-SLMSIATKIAIQLNCKLGYTPWMIELPLSG 607

Query: 204  FMVVGLDVWHDAKXXXXXXXXXXXXTNALC-TRWFSKSHLQEHDKEIVYVLQSCMLSLLK 380
             M +G D+    +             +    + +FS          +   L   +   L+
Sbjct: 608  LMTIGFDIAKSTRDRKRAYGALIASMDLQQNSTYFSTVTECSAFDVLANTLWPMIAKALR 667

Query: 381  AYFEENNFLPDTIFMYRDGVSDGQLGYVQKTEIEQFFKVFESFSADYK------PNMVYN 542
             Y  E+  LP  I  YRDGVS G L  + + E++    + E    +Y       P + Y 
Sbjct: 668  QYQHEHRKLPSRIVFYRDGVSSGSLKQLFEFEVKD---IIEKLKTEYARVQLSPPQLAYI 724

Query: 543  VVQKRINTRLYVSDPKNKGQVNNPNPGTIVDHTVTRANLYDFFLVSQSVRQGTVTPTHYV 722
            VV + +NTR +++     GQ  NP PGTIVD  +T    YDF+LVSQ VRQGTV+PT Y 
Sbjct: 725  VVTRSMNTRFFLN-----GQ--NPPPGTIVDDVITLPERYDFYLVSQQVRQGTVSPTSYN 777

Query: 723  VLCDNSRYTPHQVQLMAYKTCHIYYNWPGTVRVPAPCMYAHKLAYMGWSKFKSRAQS 893
            VL  +   +P ++Q + YK CH+YYNW GT RVPA C YA KLA +  +   S  Q+
Sbjct: 778  VLYSSMGLSPEKMQKLTYKMCHLYYNWSGTTRVPAVCQYAKKLATLVGTNLHSIPQN 834
>sp|O77503|I2C2_RABIT Eukaryotic translation initiation factor 2C 2 (eIF2C 2) (eIF-2C 2)
            (Argonaute-2)
          Length = 840

 Score =  135 bits (339), Expect = 2e-31
 Identities = 83/250 (33%), Positives = 130/250 (52%), Gaps = 9/250 (3%)
 Frame = +3

Query: 135  NIALQINAKLGGE----LWAVKIPIKKFMVV--GLDVWHD--AKXXXXXXXXXXXXTNAL 290
            N+ L+IN KLGG     L   + P+ +  V+  G DV H                  +A 
Sbjct: 543  NLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAH 602

Query: 291  CTRWFSKSHLQEHDKEIVYVLQSCMLSLLKAYFEENNFLPDTIFMYRDGVSDGQLGYVQK 470
              R+ +   +Q+H +EI+  L + +  LL  +++   F P  I  YRDGVS+GQ   V  
Sbjct: 603  PNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLH 662

Query: 471  TEIEQFFKVFESFSADYKPNMVYNVVQKRINTRLYVSDPKNK-GQVNNPNPGTIVDHTVT 647
             E+    +       DY+P + + VVQKR +TRL+ +D   + G+  N   GT VD  +T
Sbjct: 663  HELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKIT 722

Query: 648  RANLYDFFLVSQSVRQGTVTPTHYVVLCDNSRYTPHQVQLMAYKTCHIYYNWPGTVRVPA 827
                +DF+L S +  QGT  P+HY VL D++R++  ++Q++ Y+ CH Y     +V +PA
Sbjct: 723  HPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPA 782

Query: 828  PCMYAHKLAY 857
            P  YAH +A+
Sbjct: 783  PAYYAHLVAF 792
>sp|Q9UKV8|I2C2_HUMAN Eukaryotic translation initiation factor 2C 2 (eIF2C 2) (eIF-2C 2)
            (Argonaute-2) (Slicer protein) (PAZ Piwi domain protein)
            (PPD)
          Length = 851

 Score =  135 bits (339), Expect = 2e-31
 Identities = 83/250 (33%), Positives = 130/250 (52%), Gaps = 9/250 (3%)
 Frame = +3

Query: 135  NIALQINAKLGGE----LWAVKIPIKKFMVV--GLDVWHD--AKXXXXXXXXXXXXTNAL 290
            N+ L+IN KLGG     L   + P+ +  V+  G DV H                  +A 
Sbjct: 554  NLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAH 613

Query: 291  CTRWFSKSHLQEHDKEIVYVLQSCMLSLLKAYFEENNFLPDTIFMYRDGVSDGQLGYVQK 470
              R+ +   +Q+H +EI+  L + +  LL  +++   F P  I  YRDGVS+GQ   V  
Sbjct: 614  PNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLH 673

Query: 471  TEIEQFFKVFESFSADYKPNMVYNVVQKRINTRLYVSDPKNK-GQVNNPNPGTIVDHTVT 647
             E+    +       DY+P + + VVQKR +TRL+ +D   + G+  N   GT VD  +T
Sbjct: 674  HELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKIT 733

Query: 648  RANLYDFFLVSQSVRQGTVTPTHYVVLCDNSRYTPHQVQLMAYKTCHIYYNWPGTVRVPA 827
                +DF+L S +  QGT  P+HY VL D++R++  ++Q++ Y+ CH Y     +V +PA
Sbjct: 734  HPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPA 793

Query: 828  PCMYAHKLAY 857
            P  YAH +A+
Sbjct: 794  PAYYAHLVAF 803
>sp|Q8CJG0|I2C2_MOUSE Eukaryotic translation initiation factor 2C 2 (eIF2C 2) (eIF-2C 2)
            (Argonaute-2) (Slicer protein) (Piwi/argonaute family
            protein meIF2C2)
          Length = 860

 Score =  134 bits (338), Expect = 3e-31
 Identities = 83/250 (33%), Positives = 130/250 (52%), Gaps = 9/250 (3%)
 Frame = +3

Query: 135  NIALQINAKLGGE----LWAVKIPIKKFMVV--GLDVWHD--AKXXXXXXXXXXXXTNAL 290
            N+ L+IN KLGG     L   + P+ +  V+  G DV H                  +A 
Sbjct: 563  NLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAH 622

Query: 291  CTRWFSKSHLQEHDKEIVYVLQSCMLSLLKAYFEENNFLPDTIFMYRDGVSDGQLGYVQK 470
              R+ +   +Q+H +EI+  L + +  LL  +++   F P  I  YRDGVS+GQ   V  
Sbjct: 623  PNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLH 682

Query: 471  TEIEQFFKVFESFSADYKPNMVYNVVQKRINTRLYVSDPKNK-GQVNNPNPGTIVDHTVT 647
             E+    +       DY+P + + VVQKR +TRL+ +D   + G+  N   GT VD  +T
Sbjct: 683  HELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKIT 742

Query: 648  RANLYDFFLVSQSVRQGTVTPTHYVVLCDNSRYTPHQVQLMAYKTCHIYYNWPGTVRVPA 827
                +DF+L S +  QGT  P+HY VL D++R++  ++Q++ Y+ CH Y     +V +PA
Sbjct: 743  HPTEFDFYLCSHAGIQGTGRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPA 802

Query: 828  PCMYAHKLAY 857
            P  YAH +A+
Sbjct: 803  PAYYAHLVAF 812
>sp|Q9H9G7|I2C3_HUMAN Eukaryotic translation initiation factor 2C 3 (eIF2C 3) (eIF-2C 3)
            (Argonaute-3)
          Length = 860

 Score =  134 bits (336), Expect = 5e-31
 Identities = 89/269 (33%), Positives = 137/269 (50%), Gaps = 10/269 (3%)
 Frame = +3

Query: 81   VVLAQTLKEGPKLNSVAVNIALQINAKLGGELWAVKIPIKKFMV-------VGLDVWHD- 236
            V +   +K  P+  S   N+ L+IN KLGG +  + +P ++  V       +G DV H  
Sbjct: 548  VQVKNVIKTSPQTLS---NLCLKINVKLGG-INNILVPHQRPSVFQQPVIFLGADVTHPP 603

Query: 237  -AKXXXXXXXXXXXXTNALCTRWFSKSHLQEHDKEIVYVLQSCMLSLLKAYFEENNFLPD 413
                            +A  +R+ +   +Q   +EI+  L S +  LL  +++   F P 
Sbjct: 604  AGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPT 663

Query: 414  TIFMYRDGVSDGQLGYVQKTEIEQFFKVFESFSADYKPNMVYNVVQKRINTRLYVSDPKN 593
             I  YRDGVS+GQ   V   E+    +   S   DY+P + Y VVQKR +TRL+ +D   
Sbjct: 664  RIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTE 723

Query: 594  K-GQVNNPNPGTIVDHTVTRANLYDFFLVSQSVRQGTVTPTHYVVLCDNSRYTPHQVQLM 770
            + G+  N   GT VD  +T    +DF+L S +  QGT  P+HY VL D++ +T  ++QL+
Sbjct: 724  RVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLL 783

Query: 771  AYKTCHIYYNWPGTVRVPAPCMYAHKLAY 857
             Y+ CH Y     +V +PAP  YAH +A+
Sbjct: 784  TYQLCHTYVRCTRSVSIPAPAYYAHLVAF 812
>sp|Q8CJF9|I2C3_MOUSE Eukaryotic translation initiation factor 2C 3 (eIF2C 3) (eIF-2C 3)
            (Argonaute-3) (Piwi/argonaute family protein meIF2C3)
          Length = 860

 Score =  134 bits (336), Expect = 5e-31
 Identities = 89/269 (33%), Positives = 137/269 (50%), Gaps = 10/269 (3%)
 Frame = +3

Query: 81   VVLAQTLKEGPKLNSVAVNIALQINAKLGGELWAVKIPIKKFMV-------VGLDVWHD- 236
            V +   +K  P+  S   N+ L+IN KLGG +  + +P ++  V       +G DV H  
Sbjct: 548  VQVKNVIKTSPQTLS---NLCLKINVKLGG-INNILVPHQRPSVFQQPVIFLGADVTHPP 603

Query: 237  -AKXXXXXXXXXXXXTNALCTRWFSKSHLQEHDKEIVYVLQSCMLSLLKAYFEENNFLPD 413
                            +A  +R+ +   +Q   +EI+  L S +  LL  +++   F P 
Sbjct: 604  AGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPT 663

Query: 414  TIFMYRDGVSDGQLGYVQKTEIEQFFKVFESFSADYKPNMVYNVVQKRINTRLYVSDPKN 593
             I  YRDGVS+GQ   V   E+    +   S   DY+P + Y VVQKR +TRL+ +D   
Sbjct: 664  RIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTE 723

Query: 594  K-GQVNNPNPGTIVDHTVTRANLYDFFLVSQSVRQGTVTPTHYVVLCDNSRYTPHQVQLM 770
            + G+  N   GT VD  +T    +DF+L S +  QGT  P+HY VL D++ +T  ++QL+
Sbjct: 724  RVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNFFTADELQLL 783

Query: 771  AYKTCHIYYNWPGTVRVPAPCMYAHKLAY 857
             Y+ CH Y     +V +PAP  YAH +A+
Sbjct: 784  TYQLCHTYVRCTRSVSIPAPAYYAHLVAF 812
>sp|Q9QZ81|I2C2_RAT Eukaryotic translation initiation factor 2C 2 (eIF2C 2) (eIF-2C 2)
            (Argonaute-2) (Golgi ER protein 95 kDa) (GERp95)
          Length = 860

 Score =  133 bits (335), Expect = 7e-31
 Identities = 82/250 (32%), Positives = 130/250 (52%), Gaps = 9/250 (3%)
 Frame = +3

Query: 135  NIALQINAKLGGE----LWAVKIPIKKFMVV--GLDVWHD--AKXXXXXXXXXXXXTNAL 290
            N+ L+IN KLGG     L   + P+ +  V+  G DV H                  +A 
Sbjct: 563  NLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAH 622

Query: 291  CTRWFSKSHLQEHDKEIVYVLQSCMLSLLKAYFEENNFLPDTIFMYRDGVSDGQLGYVQK 470
              R+ +   +Q+H +EI+  L + +  LL  +++   F P  I  YRDGVS+GQ   V  
Sbjct: 623  PNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLH 682

Query: 471  TEIEQFFKVFESFSADYKPNMVYNVVQKRINTRLYVSDPKNK-GQVNNPNPGTIVDHTVT 647
             E+    +       +Y+P + + VVQKR +TRL+ +D   + G+  N   GT VD  +T
Sbjct: 683  HELLAIREACIKLEKEYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKIT 742

Query: 648  RANLYDFFLVSQSVRQGTVTPTHYVVLCDNSRYTPHQVQLMAYKTCHIYYNWPGTVRVPA 827
                +DF+L S +  QGT  P+HY VL D++R++  ++Q++ Y+ CH Y     +V +PA
Sbjct: 743  HPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPA 802

Query: 828  PCMYAHKLAY 857
            P  YAH +A+
Sbjct: 803  PAYYAHLVAF 812
>sp|Q8CJF8|I2C4_MOUSE Eukaryotic translation initiation factor 2C 4 (eIF2C 4) (eIF-2C 4)
            (Argonaute-4) (Piwi/argonaute family protein meIF2C4)
          Length = 861

 Score =  132 bits (333), Expect = 1e-30
 Identities = 95/279 (34%), Positives = 139/279 (49%), Gaps = 20/279 (7%)
 Frame = +3

Query: 81   VVLAQTLKEGPKLNSVAVNIALQINAKLGGELWAVKIPIKKFMV-------VGLDVWH-- 233
            V +   +K  P+  S   N+ L++NAKLGG +  V +P ++  V       +G DV H  
Sbjct: 539  VQIKNVVKTSPQTLS---NLCLKMNAKLGG-INNVPVPHQRPSVFQQPVIFLGADVTHPP 594

Query: 234  --DAKXXXXXXXXXXXX---TNALCTRWFSKSH---LQE--HDKEIVYVLQSCMLSLLKA 383
              D K               +    T W   S     QE  + +E+V  L S    LL  
Sbjct: 595  AGDGKKPSIAAVVGSMDGHPSRYCATVWVQTSRQEIAQELLYSQEVVQDLTSMARELLIQ 654

Query: 384  YFEENNFLPDTIFMYRDGVSDGQLGYVQKTEIEQFFKVFESFSADYKPNMVYNVVQKRIN 563
            +++   F P  I  YR GVS+GQ+  V   E+    K   S   DY+P + Y VVQKR +
Sbjct: 655  FYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHH 714

Query: 564  TRLYVSDPKNK-GQVNNPNPGTIVDHTVTRANLYDFFLVSQSVRQGTVTPTHYVVLCDNS 740
            TRL+ +D   + G+  N   GT VD TVT  + +DF+L S +  QGT  P+HY VL D++
Sbjct: 715  TRLFCADKMERVGKSGNVPAGTTVDSTVTHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDN 774

Query: 741  RYTPHQVQLMAYKTCHIYYNWPGTVRVPAPCMYAHKLAY 857
             +T  ++QL+ Y+ CH Y     +V +PAP  YA  +A+
Sbjct: 775  CFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAF 813
>sp|Q9HCK5|I2C4_HUMAN Eukaryotic translation initiation factor 2C 4 (eIF2C 4) (eIF-2C 4)
            (Argonaute-4)
          Length = 861

 Score =  130 bits (328), Expect = 4e-30
 Identities = 92/279 (32%), Positives = 140/279 (50%), Gaps = 20/279 (7%)
 Frame = +3

Query: 81   VVLAQTLKEGPKLNSVAVNIALQINAKLGGELWAVKIPIKKFMV-------VGLDVWH-- 233
            V +   +K  P+  S   N+ L+INAKLGG +  V +P ++  V       +G DV H  
Sbjct: 539  VQVKNVVKTSPQTLS---NLCLKINAKLGG-INNVLVPHQRPSVFQQPVIFLGADVTHPP 594

Query: 234  --DAKXXXXXXXXXXXX--TNALCTRWFSKSHLQEHDKEIVYV------LQSCMLSLLKA 383
              D K               +  C     ++  QE  +E++Y       L + +  LL  
Sbjct: 595  AGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEISQELLYSQEVIQDLTNMVRELLIQ 654

Query: 384  YFEENNFLPDTIFMYRDGVSDGQLGYVQKTEIEQFFKVFESFSADYKPNMVYNVVQKRIN 563
            +++   F P  I  YR GVS+GQ+  V   E+    K   S   DY+P + Y VVQKR +
Sbjct: 655  FYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHH 714

Query: 564  TRLYVSDPKNK-GQVNNPNPGTIVDHTVTRANLYDFFLVSQSVRQGTVTPTHYVVLCDNS 740
            TRL+ +D   + G+  N   GT VD T+T  + +DF+L S +  QGT  P+HY VL D++
Sbjct: 715  TRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDN 774

Query: 741  RYTPHQVQLMAYKTCHIYYNWPGTVRVPAPCMYAHKLAY 857
             +T  ++QL+ Y+ CH Y     +V +PAP  YA  +A+
Sbjct: 775  CFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAF 813
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,243,610
Number of Sequences: 369166
Number of extensions: 2211882
Number of successful extensions: 5186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5164
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10479017505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)