Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_N13
(695 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O88878|Z20D2_MOUSE Zinc finger A20 domain containing pro... 117 3e-26
sp|O76080|Z20D2_HUMAN Zinc finger A20 domain containing pro... 116 5e-26
sp|Q6NNI8|ZF2N1_ARATH Zinc finger A20 and AN1 domains conta... 99 8e-21
sp|Q9SZ69|ZF2N3_ARATH Zinc finger A20 and AN1 domains conta... 99 1e-20
sp|Q9SJM6|ZF2N2_ARATH Zinc finger A20 and AN1 domains conta... 92 1e-18
sp|Q9LLX1|ISAP1_ORYSA Multiple stress-responsive zinc-finge... 86 9e-17
sp|O18973|RABX5_BOVIN Rab5 GDP/GTP exchange factor (Rabex-5) 41 0.003
sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor (Rabex-5) 41 0.003
sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor (Rabex-5) 40 0.006
sp|Q60769|TNAP3_MOUSE Tumor necrosis factor, alpha-induced ... 34 0.42
>sp|O88878|Z20D2_MOUSE Zinc finger A20 domain containing protein 2 (Zinc finger protein
216)
Length = 213
Score = 117 bits (293), Expect = 3e-26
Identities = 70/213 (32%), Positives = 100/213 (46%), Gaps = 28/213 (13%)
Frame = +3
Query: 3 MEENNPQQNFSQLCKMGCGYFGSSNFDGLCSQCYKEKEKQFENNHKLNNTSFATYNEKPF 182
M + Q LC GCG++G+ +G+CS CYKE ++ +N+ +++ A+ + P
Sbjct: 1 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 60
Query: 183 GD---IQES------------LIHEDIETESVIXXXXXXXXXXXXXXXXXXIVTGDTNKS 317
D +Q + E V I T T S
Sbjct: 61 SDSASVQRADAGLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVS 120
Query: 318 D-ISNSETNSVASASSV------------KKNRCQLCRKKVGLTGFACRCGGMFCSAHRY 458
+ + + SV+ SS KKNRC +CRKKVGLTGF CRCG +FC HRY
Sbjct: 121 EPVVTQPSPSVSQPSSSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 180
Query: 459 SDSHSCTFDYKVDAENAIRKANPRIVSNKVAKI 557
SD H+C +DYK +A IRK NP +V+ K+ +I
Sbjct: 181 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>sp|O76080|Z20D2_HUMAN Zinc finger A20 domain containing protein 2 (Zinc finger protein
216)
Length = 213
Score = 116 bits (291), Expect = 5e-26
Identities = 68/214 (31%), Positives = 99/214 (46%), Gaps = 29/214 (13%)
Frame = +3
Query: 3 MEENNPQQNFSQLCKMGCGYFGSSNFDGLCSQCYKEKEKQFENNHKLNNTSFATYNEKPF 182
M + Q LC GCG++G+ +G+CS CYKE ++ +N+ +++ A+ + P
Sbjct: 1 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 60
Query: 183 GDIQESLIHEDIETESVIXXXXXXXXXXXXXXXXXXIVTGDTNKSDISNSE--------- 335
D S+ D + VT + IS +
Sbjct: 61 SD-SASVQRADTSLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEV 119
Query: 336 --------TNSVASASSV------------KKNRCQLCRKKVGLTGFACRCGGMFCSAHR 455
+ SV+ S+ KKNRC +CRKKVGLTGF CRCG +FC HR
Sbjct: 120 SEPVVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHR 179
Query: 456 YSDSHSCTFDYKVDAENAIRKANPRIVSNKVAKI 557
YSD H+C +DYK +A IRK NP +V+ K+ +I
Sbjct: 180 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>sp|Q6NNI8|ZF2N1_ARATH Zinc finger A20 and AN1 domains containing protein At1g12440
Length = 168
Score = 99.4 bits (246), Expect = 8e-21
Identities = 63/188 (33%), Positives = 87/188 (46%), Gaps = 5/188 (2%)
Frame = +3
Query: 9 ENNPQQNFS----QLCKMGCGYFGSSNFDGLCSQCYKEKEKQFENNHKLNNTSFATYN-E 173
E N +FS +LC GCG+FGS + LCS+CY++ E + N
Sbjct: 4 EQNDSTSFSPSEPKLCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLNPN 63
Query: 174 KPFGDIQESLIHEDIETESVIXXXXXXXXXXXXXXXXXXIVTGDTNKSDISNSETNSVAS 353
KP Q+S ++I T+ V+ +G ++ S +
Sbjct: 64 KPKTQPQQS---QEI-TQGVLG-------------------SGSSSSSTRGGDSAAAPLD 100
Query: 354 ASSVKKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKANPRI 533
RC C KKVG+TGF CRCG FC HRY +SH C FD+K A AI KANP +
Sbjct: 101 PPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAREAIAKANPVV 160
Query: 534 VSNKVAKI 557
++KV +I
Sbjct: 161 KADKVDRI 168
>sp|Q9SZ69|ZF2N3_ARATH Zinc finger A20 and AN1 domains containing protein At4g12040
Length = 175
Score = 98.6 bits (244), Expect = 1e-20
Identities = 58/187 (31%), Positives = 89/187 (47%), Gaps = 3/187 (1%)
Frame = +3
Query: 6 EENNPQQ---NFSQLCKMGCGYFGSSNFDGLCSQCYKEKEKQFENNHKLNNTSFATYNEK 176
EENN +LC GCG+FGS + LCS+CY+ + + T+ A
Sbjct: 4 EENNSTSFPPTEPKLCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQ------TAVAK---- 53
Query: 177 PFGDIQESLIHEDIETESVIXXXXXXXXXXXXXXXXXXIVTGDTNKSDISNSETNSVASA 356
++ SL + + S+I +VT + + ++ + + S
Sbjct: 54 --AAVKNSL---KLPSCSIIAPGQKHPLEIKPAHLETVVVTAEPSSVPVAAEQDEAEPSR 108
Query: 357 SSVKKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKANPRIV 536
NRC C KKVG+ GF C+CG FC +HRY + H C+FD+K +AI KANP +
Sbjct: 109 PVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGRDAIAKANPLVK 168
Query: 537 SNKVAKI 557
++KV +I
Sbjct: 169 ADKVQRI 175
>sp|Q9SJM6|ZF2N2_ARATH Zinc finger A20 and AN1 domains containing protein At2g36320
Length = 161
Score = 92.4 bits (228), Expect = 1e-18
Identities = 54/174 (31%), Positives = 79/174 (45%)
Frame = +3
Query: 36 QLCKMGCGYFGSSNFDGLCSQCYKEKEKQFENNHKLNNTSFATYNEKPFGDIQESLIHED 215
+LC CG+FGSS LCS CY + + + + +T ++ + ++ +
Sbjct: 14 RLCVNNCGFFGSSATMNLCSNCYGDLCLKQQQQASMKSTVESSLSPVIAPVLENYAAELE 73
Query: 216 IETESVIXXXXXXXXXXXXXXXXXXIVTGDTNKSDISNSETNSVASASSVKKNRCQLCRK 395
I T T T + T + + NRC +CRK
Sbjct: 74 IPT------------------------TKKTEEKKPIQIPTEQPSPPQ--RPNRCTVCRK 107
Query: 396 KVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKANPRIVSNKVAKI 557
+VGLTGF CRCG FC +HRY + H CTFD+K I KANP +++ K+ KI
Sbjct: 108 RVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLVIAAKLQKI 161
>sp|Q9LLX1|ISAP1_ORYSA Multiple stress-responsive zinc-finger protein ISAP1
(Stress-associated protein 1) (OsISAP1)
Length = 164
Score = 85.9 bits (211), Expect = 9e-17
Identities = 38/70 (54%), Positives = 49/70 (70%)
Frame = +3
Query: 345 VASASSVKKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKAN 524
VA S+V NRC CRK+VGLTGF CRCG +FC HRYSD H C++DYK A +AI + N
Sbjct: 96 VAKTSAV--NRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDN 153
Query: 525 PRIVSNKVAK 554
P + + K+ +
Sbjct: 154 PVVRAAKIVR 163
>sp|O18973|RABX5_BOVIN Rab5 GDP/GTP exchange factor (Rabex-5)
Length = 492
Score = 41.2 bits (95), Expect = 0.003
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
Frame = +3
Query: 39 LCKMGCGYFGSSNFDGLCSQCYKE-----KEKQFENNHKL 143
LCK GCGY+G+ + G CS+C++E ++KQ + + +L
Sbjct: 18 LCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWEL 57
>sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor (Rabex-5)
Length = 708
Score = 41.2 bits (95), Expect = 0.003
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
Frame = +3
Query: 39 LCKMGCGYFGSSNFDGLCSQCYKE-----KEKQFENNHKL 143
LCK GCGY+G+ + G CS+C++E ++KQ + + +L
Sbjct: 156 LCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWEL 195
>sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor (Rabex-5)
Length = 491
Score = 40.0 bits (92), Expect = 0.006
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 39 LCKMGCGYFGSSNFDGLCSQCYKEK 113
LCK GCGY+G+ + G CS+C++E+
Sbjct: 18 LCKKGCGYYGNPAWQGFCSKCWREE 42
>sp|Q60769|TNAP3_MOUSE Tumor necrosis factor, alpha-induced protein 3 (Putative DNA
binding protein A20) (Zinc finger protein A20)
Length = 775
Score = 33.9 bits (76), Expect = 0.42
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 24/89 (26%)
Frame = +3
Query: 33 SQLCKMGCGYFGSSNFDGLCSQC---YKEKEK-------------QFENN--------HK 140
S+ K GC YFG+ G C+ C Y+E ++ +F+NN
Sbjct: 590 SKCRKAGCMYFGTPENKGFCTLCFIEYRENKQSVTASAKAGSPAPRFQNNVPCLGRECGT 649
Query: 141 LNNTSFATYNEKPFGDIQESLIHEDIETE 227
L +T F Y +K F + Q HE TE
Sbjct: 650 LGSTMFEGYCQKCFIEAQNQRFHEARRTE 678
Score = 31.6 bits (70), Expect = 2.1
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 ENNPQQNFSQLCKM-GCGYFGSSNFDGLCSQCYKEKE 116
E P++ Q C+ C +FG++ +G C++CY+ K+
Sbjct: 736 EPTPEEPPKQRCRAPACDHFGNAKCNGYCNECYQFKQ 772
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,297,875
Number of Sequences: 369166
Number of extensions: 1317166
Number of successful extensions: 3858
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3856
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6024953540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)