Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_N02
(789 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34217|YBF1_YEAST Hypothetical 73.8 kDa protein in SAS3-... 33 0.68
sp|Q7MH01|MUTL_VIBVY DNA mismatch repair protein mutL 32 1.5
sp|Q8DCV0|MUTL_VIBVU DNA mismatch repair protein mutL 32 2.6
>sp|P34217|YBF1_YEAST Hypothetical 73.8 kDa protein in SAS3-SEC17 intergenic region
Length = 668
Score = 33.5 bits (75), Expect = 0.68
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +3
Query: 474 LVLLGLPFKFNQAQAKILIPDMVSIILPYNVHRHQINGN----AYVDVSKPESVASHISK 641
+V+ +PF + Q +I +M + LPY + H NG A+ + + PE I+
Sbjct: 87 IVIKNIPFAIKKEQLLDIIEEM-DLPLPYAFNYHFDNGIFRGLAFANFTTPEETTQVITS 145
Query: 642 LKGFKIKGQKM 674
L G +I G+K+
Sbjct: 146 LNGKEISGRKL 156
>sp|Q7MH01|MUTL_VIBVY DNA mismatch repair protein mutL
Length = 664
Score = 32.3 bits (72), Expect = 1.5
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +3
Query: 459 RKNKTLVLLGLPFKFNQAQAKILIPDMVSIILPYNVHRHQINGNAYVDVSKPESVASHIS 638
R K L+++G+P Q ++LIPD++S Y + Q A D + + +A ++
Sbjct: 562 RNEKALMVMGVPAPLRQQNLQLLIPDLLS----YAASQAQKEEQAKNDTAMAQWLALRVA 617
Query: 639 KLK 647
K+K
Sbjct: 618 KVK 620
>sp|Q8DCV0|MUTL_VIBVU DNA mismatch repair protein mutL
Length = 664
Score = 31.6 bits (70), Expect = 2.6
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +3
Query: 459 RKNKTLVLLGLPFKFNQAQAKILIPDMVSIILPYNVHRHQINGNAYVDVSKPESVASHIS 638
R K L+++G+P Q ++LIPD++S Y + Q A D + + +A ++
Sbjct: 562 RNEKALMVMGVPAPLRQQNLQLLIPDLLS----YAASQAQKEELAQNDTAMAQWLALRVA 617
Query: 639 KLK 647
K+K
Sbjct: 618 KVK 620
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,187,213
Number of Sequences: 369166
Number of extensions: 813668
Number of successful extensions: 2356
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2355
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7454154400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)