Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_M24
(701 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36104|SWD2_YEAST COMPASS component SWD2 (Complex protei... 123 5e-28
sp|O60137|SWD2_SCHPO Set1 complex component swd2 (Set1C com... 84 5e-16
sp|P49695|PKWA_THECU Probable serine/threonine-protein kina... 70 7e-12
sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466 67 6e-11
sp|Q9V3J8|WDS_DROME Will die slowly protein 64 4e-10
sp|Q8YV57|Y2124_ANASP Hypothetical WD-repeat protein all2124 63 7e-10
sp|Q17963|YKY4_CAEEL Hypothetical WD-repeat protein C14B1.4... 62 1e-09
sp|Q00808|HETE1_PODAN Vegetatible incompatibility protein H... 62 2e-09
sp|Q8YTC2|Y2800_ANASP Hypothetical WD-repeat protein alr2800 62 2e-09
sp|P38129|TAF5_YEAST Transcription initiation factor TFIID ... 60 4e-09
>sp|P36104|SWD2_YEAST COMPASS component SWD2 (Complex proteins associated with SET1
protein SWD2) (Set1C component SWD2)
Length = 329
Score = 123 bits (308), Expect = 5e-28
Identities = 74/209 (35%), Positives = 114/209 (54%), Gaps = 7/209 (3%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFIHTTGRPVGAFDPEGQIFVAGVNSESMR 182
L M+PVND FLS S D+++RLWDLK Q I + A+DP G +F G N E+
Sbjct: 119 LKMNPVNDTFLSSSYDESVRLWDLKISKPQVIIPSLVPNCIAYDPSGLVFALG-NPENFE 177
Query: 183 --LYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLS 356
LY+++ +GPF+ + +WN L+FS NG+ + + S+ + I DAF G+QL
Sbjct: 178 IGLYNLKKIQEGPFLIIKINDATFSQWNKLEFSNNGKYLLVGSSIGKHLIFDAFTGQQLF 237
Query: 357 NFMILGANPQRVPID---VCFSPDSQYLVCGAPDGQLCIWNTEN--KNRVALVAGFDHTP 521
+ A P R +D CF+PD ++++ DG++ IWN + N+V GF
Sbjct: 238 ELIGTRAFPMREFLDSGSACFTPDGEFVLGTDYDGRIAIWNHSDSISNKVLRPQGFIPCV 297
Query: 522 NSTSQPINCVAFNPKYAMISSAVTNLTFW 608
+ + P +AFNPKY+M +A + F+
Sbjct: 298 SHETCP-RSIAFNPKYSMFVTADETVDFY 325
>sp|O60137|SWD2_SCHPO Set1 complex component swd2 (Set1C component swd2) (COMPASS
component swd2) (Complex proteins associated with set1
protein swd2)
Length = 357
Score = 83.6 bits (205), Expect = 5e-16
Identities = 64/246 (26%), Positives = 110/246 (44%), Gaps = 43/246 (17%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFIHTTGRPVGAFDPEGQIFVA-GVNSESM 179
+ +SP ++ FLS SLD TIRLWDL++ N QG ++ + V AFD G IF + +
Sbjct: 118 IDVSPADETFLSASLDNTIRLWDLRSPNCQGLLNVSSPVVAAFDATGLIFASVSERKYKI 177
Query: 180 RLYDIRNYDKGPFVTFDVVQEAEDEWNA-LKFSPNGRMIAICSNGSQIKIIDAFDGKQLS 356
LY+I+++D PF + A ++FS +G+ + + + +IDA+ G +L
Sbjct: 178 SLYNIKSFDARPFQDIPLTFLPPHVRIANVEFSTDGKYLLLTTGNDFHYVIDAYSGSELL 237
Query: 357 NFMILGANPQRVP-----------IDVCFSPDSQYLVCGAPDGQLCIWN----TENKNRV 491
P +V C SPDS++L + LC++ + N
Sbjct: 238 RV------PSKVSTKTQDGNLTYYASACMSPDSKFLFTSYDNEHLCMYQLPELKQTVNSD 291
Query: 492 ALVAGFDH---------------------TPNSTSQPI-----NCVAFNPKYAMISSAVT 593
+V F P+STS+ + + V FNP+++ + +A +
Sbjct: 292 HIVNSFTEMGLASTTPTSNSHSTENPLAIIPSSTSKNLLPETPSIVRFNPRFSQLVTAHS 351
Query: 594 NLTFWS 611
+ FW+
Sbjct: 352 GVIFWT 357
>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase pkwA
Length = 742
Score = 69.7 bits (169), Expect = 7e-12
Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 2/197 (1%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFI--HTTGRPVGAFDPEGQIFVAGVNSES 176
++ SP M SGS D T RLW++ + HT AF P+G + +G +
Sbjct: 549 IAFSPDGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVASGSRDGT 608
Query: 177 MRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLS 356
+RL+D+ + DV+Q + +L FSP+G M+ + + S + + D G+ L
Sbjct: 609 IRLWDVATGKER-----DVLQAPAENVVSLAFSPDGSML-VHGSDSTVHLWDVASGEALH 662
Query: 357 NFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQ 536
F + V V FSPD L G+ D + +W+ + + G HT +
Sbjct: 663 TFE---GHTDWVRA-VAFSPDGALLASGSDDRTIRLWDVAAQEEHTTLEG--HT-----E 711
Query: 537 PINCVAFNPKYAMISSA 587
P++ VAF+P+ ++SA
Sbjct: 712 PVHSVAFHPEGTTLASA 728
Score = 68.2 bits (165), Expect = 2e-11
Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 2/202 (0%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFI--HTTGRPVGAFDPEGQIFVAGVNSES 176
++ SP + SGS D T+RLWD+ A + HT AF P+G + +G +
Sbjct: 507 VAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHTHYVLDIAFSPDGSMVASGSRDGT 566
Query: 177 MRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLS 356
RL+++ + V++ D A+ FSP+G M+A S I++ D GK+
Sbjct: 567 ARLWNVATGTE-----HAVLKGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDVATGKERD 621
Query: 357 NFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQ 536
+L A + V + + FSPD LV G+ D + +W+ + + HT +
Sbjct: 622 ---VLQAPAENV-VSLAFSPDGSMLVHGS-DSTVHLWDVASGEAL-------HTFEGHTD 669
Query: 537 PINCVAFNPKYAMISSAVTNLT 602
+ VAF+P A+++S + T
Sbjct: 670 WVRAVAFSPDGALLASGSDDRT 691
Score = 57.0 bits (136), Expect = 5e-08
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 3/158 (1%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFIHTTGRPVG--AFDPEGQIFVAGVNSES 176
++ SP M SGS D TIRLWD+ + + V AF P+G + V G +S +
Sbjct: 591 VAFSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHGSDS-T 649
Query: 177 MRLYDIRNYDKGPFVTFDVVQEAEDEW-NALKFSPNGRMIAICSNGSQIKIIDAFDGKQL 353
+ L+D+ + + TF E +W A+ FSP+G ++A +GS + I +D
Sbjct: 650 VHLWDVASGE--ALHTF----EGHTDWVRAVAFSPDGALLA---SGSDDRTIRLWDVAAQ 700
Query: 354 SNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIW 467
L + + V V F P+ L + DG + IW
Sbjct: 701 EEHTTLEGHTEPVH-SVAFHPEGTTLASASEDGTIRIW 737
Score = 54.7 bits (130), Expect = 2e-07
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 1/154 (0%)
Frame = +3
Query: 126 AFDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEW-NALKFSPNGRMIAIC 302
AF P G + G + + ++D+ + D+ + E +W A+ FSP+G ++A
Sbjct: 466 AFSPGGSLLAGGSGDKLIHVWDVASGDELHTL------EGHTDWVRAVAFSPDGALLASG 519
Query: 303 SNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENK 482
S+ + +++ D ++ + F +D+ FSPD + G+ DG +WN
Sbjct: 520 SDDATVRLWDVAAAEERAVF----EGHTHYVLDIAFSPDGSMVASGSRDGTARLWNVATG 575
Query: 483 NRVALVAGFDHTPNSTSQPINCVAFNPKYAMISS 584
A++ G HT + VAF+P +M++S
Sbjct: 576 TEHAVLKG--HT-----DYVYAVAFSPDGSMVAS 602
Score = 39.3 bits (90), Expect = 0.010
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFIHTTGRPVG--AFDPEGQIFVAGVNSES 176
++ SP + SGS D+TIRLWD+ A + PV AF PEG + +
Sbjct: 674 VAFSPDGALLASGSDDRTIRLWDVAAQEEHTTLEGHTEPVHSVAFHPEGTTLASASEDGT 733
Query: 177 MRLYDI 194
+R++ I
Sbjct: 734 IRIWPI 739
Score = 30.4 bits (67), Expect = 4.7
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +3
Query: 387 RVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPK 566
R + V FSP L G+ D + +W+ + + + HT + + VAF+P
Sbjct: 460 REAVAVAFSPGGSLLAGGSGDKLIHVWDVASGDEL-------HTLEGHTDWVRAVAFSPD 512
Query: 567 YAMISSAVTNLT 602
A+++S + T
Sbjct: 513 GALLASGSDDAT 524
>sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466
Length = 1526
Score = 66.6 bits (161), Expect = 6e-11
Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 5/202 (2%)
Frame = +3
Query: 12 SPVNDMFLSGSLDKTIRLWDLKA----HNSQGFIHTTGRPVGAFDPEGQIFVAGVNSESM 179
+P M SGS DKT+RLWD+ + H QG HT AF+P+G + +G +++
Sbjct: 1251 NPDGSMLASGSSDKTVRLWDISSSKCLHTFQG--HTNWVNSVAFNPDGSMLASGSGDQTV 1308
Query: 180 RLYDIRNYDKGPFVTFDVVQEAEDEW-NALKFSPNGRMIAICSNGSQIKIIDAFDGKQLS 356
RL++I + TF + W +++ FSP+G M+A S+ +++ G+ L
Sbjct: 1309 RLWEISS--SKCLHTF----QGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLY 1362
Query: 357 NFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQ 536
F+ V FSPD L G+ D + +W+ + + + G ++
Sbjct: 1363 TFL----GHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNW------ 1412
Query: 537 PINCVAFNPKYAMISSAVTNLT 602
+ + F+P +++S + T
Sbjct: 1413 -VGSIVFSPDGTLLASGSDDQT 1433
Score = 65.5 bits (158), Expect = 1e-10
Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 5/208 (2%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFI--HTTGRPVGAFDPEGQIFVAGVNSES 176
++ SP SGS D+T+RLWD+ + + HT+ F+P+G +G + ++
Sbjct: 1164 VAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQT 1223
Query: 177 MRLYDIRNYDKGPFVTFDVVQEAEDEW-NALKFSPNGRMIAICSNGSQIKIIDAFDGKQL 353
+RL++I + TF + W N++ F+P+G M+A S+ +++ D K L
Sbjct: 1224 VRLWEINS--SKCLCTF----QGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCL 1277
Query: 354 SNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTS 533
F V F+PD L G+ D + +W + + HT +
Sbjct: 1278 HTFQ----GHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCL-------HTFQGHT 1326
Query: 534 QPINCVAFNPKYAMISSAVTNLT--FWS 611
++ V F+P M++S + T WS
Sbjct: 1327 SWVSSVTFSPDGTMLASGSDDQTVRLWS 1354
Score = 64.7 bits (156), Expect = 2e-10
Identities = 52/199 (26%), Positives = 90/199 (45%), Gaps = 5/199 (2%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKA----HNSQGFIHTTGRPVGAFDPEGQIFVAGVNS 170
L SP +GS D+ +RLWD+ + + QG HT AF P+G +G
Sbjct: 1122 LVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQG--HTNWVNAVAFSPDGATLASGSGD 1179
Query: 171 ESMRLYDIRNYDKGPFVTFDVVQEAEDEW-NALKFSPNGRMIAICSNGSQIKIIDAFDGK 347
+++RL+DI + K ++ + W N++ F+P+G +A S+ +++ + K
Sbjct: 1180 QTVRLWDISS-SKCLYIL-----QGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSK 1233
Query: 348 QLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNS 527
L F V F+PD L G+ D + +W+ + + HT
Sbjct: 1234 CLCTFQ----GHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCL-------HTFQG 1282
Query: 528 TSQPINCVAFNPKYAMISS 584
+ +N VAFNP +M++S
Sbjct: 1283 HTNWVNSVAFNPDGSMLAS 1301
Score = 58.5 bits (140), Expect = 2e-08
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 5/161 (3%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKA----HNSQGFIHTTGRPVGAFDPEGQIFVAGVNS 170
++ +P M SGS D+T+RLW++ + H QG HT+ F P+G + +G +
Sbjct: 1290 VAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQG--HTSWVSSVTFSPDGTMLASGSDD 1347
Query: 171 ESMRLYDIRNYDKGPFVTFDVVQEAEDEW-NALKFSPNGRMIAICSNGSQIKIIDAFDGK 347
+++RL+ I + + TF W ++ FSP+G ++A S +++ GK
Sbjct: 1348 QTVRLWSISSGE--CLYTF----LGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGK 1401
Query: 348 QLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWN 470
L + + G N + FSPD L G+ D + +WN
Sbjct: 1402 CL--YTLQGHN--NWVGSIVFSPDGTLLASGSDDQTVRLWN 1438
Score = 55.5 bits (132), Expect = 1e-07
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 4/170 (2%)
Frame = +3
Query: 12 SPVNDMFLSGSLDKTIRLWDLKA----HNSQGFIHTTGRPVGAFDPEGQIFVAGVNSESM 179
SP + M SGS D+T+RLWD+ + + QG HT AF+ +G + G +++
Sbjct: 957 SPNSLMLASGSSDQTVRLWDISSGECLYIFQG--HTGWVYSVAFNLDGSMLATGSGDQTV 1014
Query: 180 RLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSN 359
RL+DI + F + Q ++ FS +G M+A S+ +++ D G N
Sbjct: 1015 RLWDISSSQ-----CFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSG----N 1065
Query: 360 FMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGF 509
+ V FSPD L G D + +W+ + N + + G+
Sbjct: 1066 CLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGY 1115
Score = 49.3 bits (116), Expect = 1e-05
Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 2/188 (1%)
Frame = +3
Query: 27 MFLSGSLDKTIRLWDLKAHNSQGFI--HTTGRPVGAFDPEGQIFVAGVNSESMRLYDIRN 200
M SGS D+T+RLWD+ + HT+ F P + +G + +++RL+DI +
Sbjct: 920 MLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISS 979
Query: 201 YDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGAN 380
+ + Q ++ F+ +G M+A GS + + +D F I +
Sbjct: 980 GE-----CLYIFQGHTGWVYSVAFNLDGSMLA---TGSGDQTVRLWDISSSQCFYIFQGH 1031
Query: 381 PQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFN 560
V V FS D L G+ D + +W+ + N + + G HT + V F+
Sbjct: 1032 TSCVR-SVVFSSDGAMLASGSDDQTVRLWDISSGNCLYTLQG--HT-----SCVRSVVFS 1083
Query: 561 PKYAMISS 584
P AM++S
Sbjct: 1084 PDGAMLAS 1091
Score = 38.5 bits (88), Expect = 0.017
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +3
Query: 12 SPVNDMFLSGSLDKTIRLWDLKAHNSQGFIH---TTGRPVGAFDPEGQIFVAGVNSESMR 182
SP + SGS D+T+RLW++ + +H + R V AF +G I +G + E+++
Sbjct: 1419 SPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSV-AFSSDGLILASGSDDETIK 1477
Query: 183 LYDIR 197
L+D++
Sbjct: 1478 LWDVK 1482
Score = 35.0 bits (79), Expect = 0.19
Identities = 29/111 (26%), Positives = 50/111 (45%)
Frame = +3
Query: 270 FSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPD 449
FSP+G++ A +G ++ +A GK+L G N V FS D + L G+ D
Sbjct: 872 FSPDGKLFATGDSGGIVRFWEAATGKEL--LTCKGHNSW--VNSVGFSQDGKMLASGSDD 927
Query: 450 GQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 602
+ +W+ + + G HT + V F+P M++S ++ T
Sbjct: 928 QTVRLWDISSGQCLKTFKG--HTSR-----VRSVVFSPNSLMLASGSSDQT 971
>sp|Q9V3J8|WDS_DROME Will die slowly protein
Length = 361
Score = 63.9 bits (154), Expect = 4e-10
Identities = 48/197 (24%), Positives = 93/197 (47%), Gaps = 3/197 (1%)
Frame = +3
Query: 6 SMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFIHTTGRPVGA--FDPEGQIFVAGVNSESM 179
+ +P +++ +SGS D+++R+WD++ + PV A F+ +G + V+
Sbjct: 163 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 222
Query: 180 RLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSN 359
R++D + ++ + + +KFSPNG+ I + + +K+ D GK L
Sbjct: 223 RIWDTASGQ----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 278
Query: 360 FMILGANPQRVPIDVCFS-PDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQ 536
+ G ++ I FS +++V G+ D + IWN ++K V + G T
Sbjct: 279 Y--TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTDT------ 330
Query: 537 PINCVAFNPKYAMISSA 587
+ C A +P +I+SA
Sbjct: 331 -VLCTACHPTENIIASA 346
Score = 48.1 bits (113), Expect = 2e-05
Identities = 36/109 (33%), Positives = 51/109 (46%)
Frame = +3
Query: 258 NALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVC 437
+A+KFSPNG +A S IKI A+DGK F + + DV +S DS+ LV
Sbjct: 76 SAVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAWSSDSRLLVS 131
Query: 438 GAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISS 584
G+ D L +W + + G S + C FNP+ +I S
Sbjct: 132 GSDDKTLKVWELSTGKSLKTLKGH-------SNYVFCCNFNPQSNLIVS 173
>sp|Q8YV57|Y2124_ANASP Hypothetical WD-repeat protein all2124
Length = 1683
Score = 63.2 bits (152), Expect = 7e-10
Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 4/204 (1%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFIHTTGRPVG----AFDPEGQIFVAGVNS 170
+S+S SGSLDKTI+LW + + + F G +F P+GQ +G +
Sbjct: 1078 ISISRDGQTIASGSLDKTIKLW---SRDGRLFRTLNGHEDAVYSVSFSPDGQTIASGGSD 1134
Query: 171 ESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQ 350
++++L+ + + E N + FSP+G+ +A S+ IK+ D G+
Sbjct: 1135 KTIKLWQTSDG-----TLLKTITGHEQTVNNVYFSPDGKNLASASSDHSIKLWDTTSGQL 1189
Query: 351 LSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNST 530
L M L + V I V FSPD Q + G+ D + +W+ ++ + T N
Sbjct: 1190 L---MTLTGHSAGV-ITVRFSPDGQTIAAGSEDKTVKLWHRQDGKLL-------KTLNGH 1238
Query: 531 SQPINCVAFNPKYAMISSAVTNLT 602
+N ++F+P ++SA + T
Sbjct: 1239 QDWVNSLSFSPDGKTLASASADKT 1262
Score = 57.8 bits (138), Expect = 3e-08
Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 2/209 (0%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFIHTTGRPVGA--FDPEGQIFVAGVNSES 176
+S +P D+ S + DKT+++W ++ + + V F P+G+ + +
Sbjct: 1410 ISFTPQGDLIASANADKTVKIWRVRDGKALKTLIGHDNEVNKVNFSPDGKTLASASRDNT 1469
Query: 177 MRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLS 356
++L+ N G F ++ DE + FSP+G++IA S I++ D+F G +
Sbjct: 1470 VKLW---NVSDGKFK--KTLKGHTDEVFWVSFSPDGKIIASASADKTIRLWDSFSGNLIK 1524
Query: 357 NFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQ 536
+ L A+ V V F+PD L + D + +W + + + + HT + S
Sbjct: 1525 S---LPAHNDLV-YSVNFNPDGSMLASTSADKTVKLWRSHDGHLL-------HTFSGHSN 1573
Query: 537 PINCVAFNPKYAMISSAVTNLTFWSPQID 623
+ +F+P I+SA + T QID
Sbjct: 1574 VVYSSSFSPDGRYIASASEDKTVKIWQID 1602
Score = 54.3 bits (129), Expect = 3e-07
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 4/157 (2%)
Frame = +3
Query: 12 SPVNDMFLSGSLDKTIRLWDLKAHNSQGFIHTTGRPVGA----FDPEGQIFVAGVNSESM 179
SP S S D +I+LWD + Q + TG G F P+GQ AG +++
Sbjct: 1164 SPDGKNLASASSDHSIKLWDTTS--GQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTV 1221
Query: 180 RLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSN 359
+L+ ++ + +D N+L FSP+G+ +A S IK+ DGK +
Sbjct: 1222 KLWHRQDGK-----LLKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLWRIADGKLVKT 1276
Query: 360 FMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWN 470
+ G N DV FS D + + + D + +WN
Sbjct: 1277 --LKGHNDS--VWDVNFSSDGKAIASASRDNTIKLWN 1309
Score = 53.1 bits (126), Expect = 7e-07
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 13/173 (7%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWD---------LKAHNSQGFIHTTGRPVGAFDPEGQIFV 155
+S SP + S S DKTIRLWD L AHN +++ F+P+G +
Sbjct: 1494 VSFSPDGKIIASASADKTIRLWDSFSGNLIKSLPAHND--LVYSVN-----FNPDGSMLA 1546
Query: 156 AGVNSESMRLYDIRNYDKGPFVTF----DVVQEAEDEWNALKFSPNGRMIAICSNGSQIK 323
+ ++++L+ R++D TF +VV + FSP+GR IA S +K
Sbjct: 1547 STSADKTVKLW--RSHDGHLLHTFSGHSNVVYSS-------SFSPDGRYIASASEDKTVK 1597
Query: 324 IIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENK 482
I DG L+ Q + FSPD + L+ G+ D IW +++
Sbjct: 1598 IWQ-IDGHLLTTL----PQHQAGVMSAIFSPDGKTLISGSLDTTTKIWRFDSQ 1645
Score = 37.7 bits (86), Expect = 0.030
Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 9/209 (4%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLW---------DLKAHNSQGFIHTTGRPVGAFDPEGQIFV 155
LS SP S S DKTI+LW LK HN + F +G+
Sbjct: 1245 LSFSPDGKTLASASADKTIKLWRIADGKLVKTLKGHNDSVWDVN-------FSSDGKAIA 1297
Query: 156 AGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDA 335
+ +++L++ + F A+ F P+ +IA S + I++
Sbjct: 1298 SASRDNTIKLWNRHGIELETFTGH------SGGVYAVNFLPDSNIIASASLDNTIRL--- 1348
Query: 336 FDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDH 515
+ +S +L N V F D + DG + +W++++ + + + G
Sbjct: 1349 WQRPLISPLEVLAGNSG--VYAVSFLHDGSIIATAGADGNIQLWHSQDGSLLKTLPG--- 1403
Query: 516 TPNSTSQPINCVAFNPKYAMISSAVTNLT 602
++ I ++F P+ +I+SA + T
Sbjct: 1404 -----NKAIYGISFTPQGDLIASANADKT 1427
Score = 35.0 bits (79), Expect = 0.19
Identities = 30/109 (27%), Positives = 48/109 (44%)
Frame = +3
Query: 261 ALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCG 440
++ S +G+ IA S IK+ DG+ F L + V V FSPD Q + G
Sbjct: 1077 SISISRDGQTIASGSLDKTIKLWSR-DGRL---FRTLNGHEDAV-YSVSFSPDGQTIASG 1131
Query: 441 APDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSA 587
D + +W T + + + G + T +N V F+P ++SA
Sbjct: 1132 GSDKTIKLWQTSDGTLLKTITGHEQT-------VNNVYFSPDGKNLASA 1173
>sp|Q17963|YKY4_CAEEL Hypothetical WD-repeat protein C14B1.4 in chromosome III
Length = 376
Score = 62.4 bits (150), Expect = 1e-09
Identities = 51/196 (26%), Positives = 93/196 (47%), Gaps = 3/196 (1%)
Frame = +3
Query: 6 SMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFIHTTGRPVGA--FDPEGQIFVAGVNSESM 179
+ +P + + +SGS D+++R+WD+K + PV A F+ +G + +G +
Sbjct: 178 NFNPQSSLVVSGSFDESVRIWDVKTGMCIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLV 237
Query: 180 RLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSN 359
R++D N G + +V + +KFSPNG+ I + S +K+ D GK L
Sbjct: 238 RIWDTAN---GQCIK-TLVDDENPPVAFVKFSPNGKYILASNLDSTLKLWDFSKGKTLKQ 293
Query: 360 FMILGANPQRVPIDVCFS-PDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQ 536
+ G + I FS ++++ G+ D ++ IWN + + V + G HT Q
Sbjct: 294 Y--TGHENSKYCIFANFSVTGGKWIISGSEDCKIYIWNLQTREIVQCLEG--HT-----Q 344
Query: 537 PINCVAFNPKYAMISS 584
P+ +P +I+S
Sbjct: 345 PVLASDCHPVQNIIAS 360
Score = 43.1 bits (100), Expect = 7e-04
Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 9/208 (4%)
Frame = +3
Query: 12 SPVNDMFLSGSLDKTIRLWDLKAHNSQGFIHTTGRPVG----AFDPEGQIFVAGVNSESM 179
SP + S DKT+++W++ + + TG +G A+ + + V+ + +++
Sbjct: 96 SPCGKYLGTSSADKTVKIWNMDHMICERTL--TGHKLGVNDIAWSSDSRCVVSASDDKTL 153
Query: 180 RLYDIRNYDKGPFVTFDVVQEAEDEWN---ALKFSPNGRMIAICSNGSQIKIIDAFDGKQ 350
++++I VT + + + N F+P ++ S ++I D G
Sbjct: 154 KIFEI--------VTSRMTKTLKGHNNYVFCCNFNPQSSLVVSGSFDESVRIWDVKTGMC 205
Query: 351 LSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNST 530
+ L A+ V V F+ D + G+ DG + IW+T N + + D P
Sbjct: 206 IKT---LPAHSDPVSA-VSFNRDGSLIASGSYDGLVRIWDTANGQCIKTLVD-DENP--- 257
Query: 531 SQPINCVAFNP--KYAMISSAVTNLTFW 608
P+ V F+P KY + S+ + L W
Sbjct: 258 --PVAFVKFSPNGKYILASNLDSTLKLW 283
>sp|Q00808|HETE1_PODAN Vegetatible incompatibility protein HET-E-1
Length = 1356
Score = 61.6 bits (148), Expect = 2e-09
Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 18/190 (9%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWD---------LKAHNSQGFIHTTGRPVGAFDPEGQIFV 155
++ SP SGS+D TI++WD L+ H G++H+ AF P+GQ
Sbjct: 1099 VAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHG--GWVHSV-----AFSPDGQRVA 1151
Query: 156 AGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEW-NALKFSPNGRMIAICSNGSQIKIID 332
+G +++++D + T E W ++ FSP+G+ +A S+ IKI D
Sbjct: 1152 SGSIDGTIKIWDAASG------TCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWD 1205
Query: 333 AFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTE--------NKNR 488
G G Q V FSPD Q + G+ D + IW+T N
Sbjct: 1206 TASGTCTQTLEGHGGWVQ----SVAFSPDGQRVASGSSDNTIKIWDTASGTCTQTLNVGS 1261
Query: 489 VALVAGFDHT 518
A FD+T
Sbjct: 1262 TATCLSFDYT 1271
Score = 57.8 bits (138), Expect = 3e-08
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 2/202 (0%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFIHTTGRPVGA--FDPEGQIFVAGVNSES 176
++ SP SGS DKTI++WD + + G V + F P+GQ +G + +
Sbjct: 1015 VAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHT 1074
Query: 177 MRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLS 356
++++D + T + + W+ + FSP+G+ +A S IKI DA G
Sbjct: 1075 IKIWDAVSGT----CTQTLEGHGDSVWS-VAFSPDGQRVASGSIDGTIKIWDAASGTCTQ 1129
Query: 357 NFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQ 536
G V FSPD Q + G+ DG + IW+ + + G
Sbjct: 1130 TLEGHGGWVH----SVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGW------ 1179
Query: 537 PINCVAFNPKYAMISSAVTNLT 602
+ VAF+P ++S ++ T
Sbjct: 1180 -VQSVAFSPDGQRVASGSSDKT 1200
Score = 57.0 bits (136), Expect = 5e-08
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 2/159 (1%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFIHTTGRPVG--AFDPEGQIFVAGVNSES 176
++ SP + SGS DKTI++WD + + G V AF P+GQ +G + +
Sbjct: 889 VAFSPDRERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHT 948
Query: 177 MRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLS 356
++++D + ++ ++ FSP+G+ +A S IKI D G
Sbjct: 949 IKIWDAAS-----GTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQ 1003
Query: 357 NFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNT 473
G + V FSPD Q + G+ D + IW+T
Sbjct: 1004 TLEGHGGSVW----SVAFSPDGQRVASGSDDKTIKIWDT 1038
Score = 55.1 bits (131), Expect = 2e-07
Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 2/196 (1%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFIHTTGRPV--GAFDPEGQIFVAGVNSES 176
++ SP SGS D TI++WD + + G V AF P+GQ +G ++
Sbjct: 931 VAFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKT 990
Query: 177 MRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLS 356
++++D + T + W+ + FSP+G+ +A S+ IKI D G
Sbjct: 991 IKIWDTASGT----CTQTLEGHGGSVWS-VAFSPDGQRVASGSDDKTIKIWDTASGTCTQ 1045
Query: 357 NFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQ 536
G Q V FSPD Q + G+ D + IW+ A+ T
Sbjct: 1046 TLEGHGGWVQ----SVVFSPDGQRVASGSDDHTIKIWD-------AVSGTCTQTLEGHGD 1094
Query: 537 PINCVAFNPKYAMISS 584
+ VAF+P ++S
Sbjct: 1095 SVWSVAFSPDGQRVAS 1110
Score = 54.7 bits (130), Expect = 2e-07
Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 2/191 (1%)
Frame = +3
Query: 36 SGSLDKTIRLWDLKAHNSQGFIHTTGRPVG--AFDPEGQIFVAGVNSESMRLYDIRNYDK 209
SGS DKTI++WD + + G V AF P+ + +G + ++++++D +
Sbjct: 858 SGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERVASGSDDKTIKIWDAAS--- 914
Query: 210 GPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQR 389
++ ++ FSP+G+ +A S+ IKI DA G G++
Sbjct: 915 --GTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSS--- 969
Query: 390 VPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKY 569
+ V FSPD Q + G+ D + IW+T + + G + + VAF+P
Sbjct: 970 -VLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGS-------VWSVAFSPDG 1021
Query: 570 AMISSAVTNLT 602
++S + T
Sbjct: 1022 QRVASGSDDKT 1032
>sp|Q8YTC2|Y2800_ANASP Hypothetical WD-repeat protein alr2800
Length = 1258
Score = 61.6 bits (148), Expect = 2e-09
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 3/203 (1%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFIHTTGRPV--GAFDPEGQIFVAGVNSES 176
++ SP + + +SGS D+TI+LWD + H +H V AF P+GQ +S
Sbjct: 858 IAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQS 917
Query: 177 MRLYDIRNYDKGPFVTFDVVQEAEDEWN-ALKFSPNGRMIAICSNGSQIKIIDAFDGKQL 353
+RL++ R G + +W + FSP+ +++A SN +K+ D GK +
Sbjct: 918 VRLWNCRT---GQCLK---AWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYI 971
Query: 354 SNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTS 533
S+ L + + + FSPDSQ L + D + +WN ++ +HT
Sbjct: 972 SS---LEGHTDFI-YGIAFSPDSQTLASASTDSSVRLWNISTGQCFQIL--LEHT----- 1020
Query: 534 QPINCVAFNPKYAMISSAVTNLT 602
+ V F+P+ +I++ + T
Sbjct: 1021 DWVYAVVFHPQGKIIATGSADCT 1043
Score = 60.8 bits (146), Expect = 3e-09
Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 4/208 (1%)
Frame = +3
Query: 15 PVNDMFLSGSLDKTIRLWDLKAHNSQGFI--HTTGRPVGAFDPEGQIFVAGVNSESMRLY 188
P + +GS D T++LW++ + H+ A+ P+GQ+ + +S+RL+
Sbjct: 1030 PQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLW 1089
Query: 189 DIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMI 368
D G V +++ + + FSPNG +IA CS +KI D GK L
Sbjct: 1090 DCCT---GRCV--GILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTL-- 1142
Query: 369 LGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINC 548
D+ FSPD + L + D + IW+ + G H ++
Sbjct: 1143 --TGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHL-------VSS 1193
Query: 549 VAFNPKYAMISSAVTNLT--FWSPQIDE 626
VAF+P +++S + T W+ + E
Sbjct: 1194 VAFSPDGEVVASGSQDQTVRIWNVKTGE 1221
Score = 54.7 bits (130), Expect = 2e-07
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 3/161 (1%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFI--HTTGRPVGAFDPEGQIFVAGVNSES 176
++ SP + S S D+++RLWD G + H+ F P G+I ++
Sbjct: 1068 MAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQT 1127
Query: 177 MRLYDIRNYDKGPFVTFDVVQEAEDEW-NALKFSPNGRMIAICSNGSQIKIIDAFDGKQL 353
++++D + +G + W + FSP+G+++A S+ ++I D GK
Sbjct: 1128 VKIWD---WQQGKCLK---TLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGK-- 1179
Query: 354 SNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTE 476
+ + +G + V FSPD + + G+ D + IWN +
Sbjct: 1180 CHHICIGHT--HLVSSVAFSPDGEVVASGSQDQTVRIWNVK 1218
Score = 52.0 bits (123), Expect = 2e-06
Identities = 47/190 (24%), Positives = 85/190 (44%), Gaps = 3/190 (1%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFI--HTTGRPVGAFDPEGQIFVAGVNSES 176
++ P + S S DKTI+LWD++ + HT AF P+G + +
Sbjct: 732 VAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHT 791
Query: 177 MRLYDIRNYDKGPFVTFDVVQEAEDEW-NALKFSPNGRMIAICSNGSQIKIIDAFDGKQL 353
++L+D+ +G + ++ W ++ FS +G+ +A S IKI + G+ L
Sbjct: 792 IKLWDV---SQGKCLR---TLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECL 845
Query: 354 SNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTS 533
++ + +SPDS+ LV G+ D + +W+ + + + G HT S
Sbjct: 846 KTYI----GHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHG--HTNEVCS 899
Query: 534 QPINCVAFNP 563
VAF+P
Sbjct: 900 -----VAFSP 904
Score = 47.4 bits (111), Expect = 4e-05
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 2/158 (1%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKAHN--SQGFIHTTGRPVGAFDPEGQIFVAGVNSES 176
++ SP SLD+++RLW+ + + +T AF P+ QI +G N ++
Sbjct: 900 VAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKT 959
Query: 177 MRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLS 356
++L+D + G +++ ++ D + FSP+ + +A S S +++ + G+
Sbjct: 960 VKLWD---WQTGKYISS--LEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQC-- 1012
Query: 357 NFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWN 470
F IL + V V F P + + G+ D + +WN
Sbjct: 1013 -FQILLEHTDWV-YAVVFHPQGKIIATGSADCTVKLWN 1048
Score = 40.0 bits (92), Expect = 0.006
Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 4/172 (2%)
Frame = +3
Query: 84 NSQGFIHTTGRPVGAFDPEG----QIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAED 251
N +H + +D G Q ++ GVN + D N D ++ V E
Sbjct: 591 NVLNLLHHAQVDLSGYDFSGLTVWQAYLQGVNLHDV---DFANSD----LSCCVFTETLG 643
Query: 252 EWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYL 431
+ FSP G+++A C +++ + GK L +I + V V FSPD + L
Sbjct: 644 NILSAAFSPEGQLLATCDTDCHVRVWEVKSGKLL---LICRGHSNWVRF-VVFSPDGEIL 699
Query: 432 VCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSA 587
D + +W+ + + + G +H + VAF+P ++SA
Sbjct: 700 ASCGADENVKLWSVRDGVCIKTLTGHEH-------EVFSVAFHPDGETLASA 744
>sp|P38129|TAF5_YEAST Transcription initiation factor TFIID subunit 5 (TBP-associated
factor 5) (TBP-associated factor 90 kDa) (TAFII-90)
Length = 798
Score = 60.5 bits (145), Expect = 4e-09
Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 2/169 (1%)
Frame = +3
Query: 6 SMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFIHTTGRPVG--AFDPEGQIFVAGVNSESM 179
S SP N LSGS DKT+RLW + H + PV +F P G F + ++
Sbjct: 532 SFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFATASHDQTA 591
Query: 180 RLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSN 359
RL+ + + ++ + + F PNG + S+ ++ D G +
Sbjct: 592 RLWSCDH-----IYPLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRL 646
Query: 360 FMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAG 506
F LG + I VC PD ++L G+ DG + +W+ R+ + G
Sbjct: 647 F--LGHTAPVISIAVC--PDGRWLSTGSEDGIINVWDIGTGKRLKQMRG 691
Score = 42.7 bits (99), Expect = 0.001
Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 16/167 (9%)
Frame = +3
Query: 213 PFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRV 392
P V Q + + L FS + R+ A S IKI + DG L+N I N +
Sbjct: 455 PSVCMYTFQNTNKDMSCLDFSDDCRIAAAGFQDSYIKIW-SLDGSSLNNPNIALNNNDKD 513
Query: 393 PIDVC--------------FSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNST 530
C FSPD++YL+ G+ D + +W+ + + G +H
Sbjct: 514 EDPTCKTLVGHSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNH----- 568
Query: 531 SQPINCVAFNP--KYAMISSAVTNLTFWSPQIDE*IA*CKHIHVVKI 665
P+ V+F+P Y +S WS C HI+ ++I
Sbjct: 569 --PVWDVSFSPLGHYFATASHDQTARLWS---------CDHIYPLRI 604
Score = 39.3 bits (90), Expect = 0.010
Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 5/161 (3%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLKAHNSQGFI--HTTGRPVGAFDPEGQIFVAGVNSES 176
+S SP+ F + S D+T RLW H +F P G G + ++
Sbjct: 573 VSFSPLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKT 632
Query: 177 MRLYDIRNYDKGPFV---TFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIKIIDAFDGK 347
R++D+ D T V+ ++ P+GR ++ S I + D GK
Sbjct: 633 CRMWDVSTGDSVRLFLGHTAPVI--------SIAVCPDGRWLSTGSEDGIINVWDIGTGK 684
Query: 348 QLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWN 470
+L G N + +S + L+ G D + +W+
Sbjct: 685 RLKQMRGHGKN---AIYSLSYSKEGNVLISGGADHTVRVWD 722
Score = 30.0 bits (66), Expect = 6.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 3 LSMSPVNDMFLSGSLDKTIRLWDLK 77
LS S ++ +SG D T+R+WDLK
Sbjct: 700 LSYSKEGNVLISGGADHTVRVWDLK 724
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,871,850
Number of Sequences: 369166
Number of extensions: 1810786
Number of successful extensions: 6475
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5889
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)