Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_M20
(545 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9D964|GATM_MOUSE Glycine amidinotransferase, mitochondr... 124 2e-28
sp|P50441|GATM_PIG Glycine amidinotransferase (L-arginine:g... 122 4e-28
sp|P50442|GATM_RAT Glycine amidinotransferase, mitochondria... 122 6e-28
sp|P50440|GATM_HUMAN Glycine amidinotransferase, mitochondr... 122 6e-28
sp|P29780|STRB2_STRGR Putative inosamine-phosphate amidinot... 67 2e-11
sp|P08078|STRB1_STRGR Inosamine-phosphate amidinotransferas... 62 1e-09
sp|Q54258|STRB1_STRGA Inosamine-phosphate amidinotransferas... 62 1e-09
sp|Q54264|STRB2_STRGA Putative inosamine-phosphate amidinot... 36 0.053
sp|Q8MA72|MATK_BYBLI Maturase K (Intron maturase) 30 2.9
sp|P44542|Y146_HAEIN Protein HI0146 precursor 29 6.5
>sp|Q9D964|GATM_MOUSE Glycine amidinotransferase, mitochondrial precursor
(L-arginine:glycine amidinotransferase) (Transamidinase)
(AT)
Length = 423
Score = 124 bits (310), Expect = 2e-28
Identities = 63/159 (39%), Positives = 93/159 (58%)
Frame = +3
Query: 18 DPLEEIVSRTPEMACCPEVLPEAQACISENKFDFLIVSLCKHRKKVIEPENYRLMLNEHS 197
DPLEE++ E AC P E +A E + F K+ ++ + + E
Sbjct: 73 DPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQ----KNGGLYFPKDHLKKAVAEVE 128
Query: 198 NFINFL*GEGVKVVHPDSVDFAKTFKTPNFSAHGVDCAMpreFLLVVGDEMIESTMTWRS 377
N L EGV V PD +D++ +KTP+F + G+ AMPR+ L+VVG+E+IE+ M WRS
Sbjct: 129 EMCNILSMEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILMVVGNEIIEAPMAWRS 188
Query: 378 GYFEFMCYRTLIKDYWRHGAKWTAAPRPMCRESLFKENY 494
+FE+ YR++IKDY+ GAKWT AP+P + L+ +NY
Sbjct: 189 RFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYDQNY 227
>sp|P50441|GATM_PIG Glycine amidinotransferase (L-arginine:glycine amidinotransferase)
(Transamidinase) (AT)
Length = 386
Score = 122 bits (307), Expect = 4e-28
Identities = 62/159 (38%), Positives = 94/159 (59%)
Frame = +3
Query: 18 DPLEEIVSRTPEMACCPEVLPEAQACISENKFDFLIVSLCKHRKKVIEPENYRLMLNEHS 197
DPLEE++ E AC P E +A E + F K+ ++ + + E
Sbjct: 36 DPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQ----KYGGHYFPKDHLKKAVAEIE 91
Query: 198 NFINFL*GEGVKVVHPDSVDFAKTFKTPNFSAHGVDCAMpreFLLVVGDEMIESTMTWRS 377
N L EGV V PD +D++ +KTP+F + G+ AMPR+ L+VVG+E+IE+ M WR+
Sbjct: 92 EMCNILKMEGVTVRRPDPIDWSVKYKTPDFESTGLYGAMPRDILIVVGNEIIEAPMAWRA 151
Query: 378 GYFEFMCYRTLIKDYWRHGAKWTAAPRPMCRESLFKENY 494
+FE+ YR++IKDY+R GAKWT AP+P + L+ ++Y
Sbjct: 152 RFFEYRAYRSIIKDYFRRGAKWTTAPKPTMADELYDQDY 190
>sp|P50442|GATM_RAT Glycine amidinotransferase, mitochondrial precursor
(L-arginine:glycine amidinotransferase) (Transamidinase)
(AT)
Length = 423
Score = 122 bits (306), Expect = 6e-28
Identities = 62/159 (38%), Positives = 93/159 (58%)
Frame = +3
Query: 18 DPLEEIVSRTPEMACCPEVLPEAQACISENKFDFLIVSLCKHRKKVIEPENYRLMLNEHS 197
DPLEE++ E AC P E +A E + F K+ ++ + + E
Sbjct: 73 DPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQ----KNGGLYFPKDHLKKAVAEVE 128
Query: 198 NFINFL*GEGVKVVHPDSVDFAKTFKTPNFSAHGVDCAMpreFLLVVGDEMIESTMTWRS 377
N L EGV V PD +D++ +KTP+F + G+ AMPR+ L+VVG+E+IE+ M WRS
Sbjct: 129 EMCNILSMEGVTVKRPDPIDWSLKYKTPDFESTGLYSAMPRDILMVVGNEIIEAPMAWRS 188
Query: 378 GYFEFMCYRTLIKDYWRHGAKWTAAPRPMCRESLFKENY 494
+FE+ YR++IKDY+ GAKWT AP+P + L+ ++Y
Sbjct: 189 RFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYDQDY 227
>sp|P50440|GATM_HUMAN Glycine amidinotransferase, mitochondrial precursor
(L-arginine:glycine amidinotransferase) (Transamidinase)
(AT)
Length = 423
Score = 122 bits (306), Expect = 6e-28
Identities = 62/159 (38%), Positives = 92/159 (57%)
Frame = +3
Query: 18 DPLEEIVSRTPEMACCPEVLPEAQACISENKFDFLIVSLCKHRKKVIEPENYRLMLNEHS 197
DPLEE++ E AC P E +A E + F K ++ + + E
Sbjct: 73 DPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQ----KQGGHYFPKDHLKKAVAEIE 128
Query: 198 NFINFL*GEGVKVVHPDSVDFAKTFKTPNFSAHGVDCAMpreFLLVVGDEMIESTMTWRS 377
N L EGV V PD +D++ +KTP+F + G+ AMPR+ L+VVG+E+IE+ M WRS
Sbjct: 129 EMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRS 188
Query: 378 GYFEFMCYRTLIKDYWRHGAKWTAAPRPMCRESLFKENY 494
+FE+ YR++IKDY+ GAKWT AP+P + L+ ++Y
Sbjct: 189 RFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYNQDY 227
>sp|P29780|STRB2_STRGR Putative inosamine-phosphate amidinotransferase II (Aminocyclitol
amidinotransferase) (ADT)
Length = 349
Score = 67.4 bits (163), Expect = 2e-11
Identities = 32/88 (36%), Positives = 52/88 (59%)
Frame = +3
Query: 219 GEGVKVVHPDSVDFAKTFKTPNFSAHGVDCAMpreFLLVVGDEMIESTMTWRSGYFEFMC 398
G GV V P + D A +TP++ + G PR+ LLVVGD +IE+ M R+ + E +
Sbjct: 75 GLGVTVRRPGARDSAAPVRTPDWESDGYGDLCPRDGLLVVGDTVIEAPMALRARFLESLA 134
Query: 399 YRTLIKDYWRHGAKWTAAPRPMCRESLF 482
Y+ L+ +Y G++W +AP+P E ++
Sbjct: 135 YKELLVEYLAAGSRWISAPKPRLAEGMY 162
>sp|P08078|STRB1_STRGR Inosamine-phosphate amidinotransferase I (Aminocyclitol
amidinotransferase) (ADT)
Length = 347
Score = 61.6 bits (148), Expect = 1e-09
Identities = 32/97 (32%), Positives = 50/97 (51%)
Frame = +3
Query: 225 GVKVVHPDSVDFAKTFKTPNFSAHGVDCAMpreFLLVVGDEMIESTMTWRSGYFEFMCYR 404
GV V P D + KTP++ G PR+ LL VG +IE+ M RS + E + Y+
Sbjct: 76 GVTVRRPGPRDHSALIKTPDWETDGFHDYCPRDGLLSVGQTIIETPMALRSRFLESLAYK 135
Query: 405 TLIKDYWRHGAKWTAAPRPMCRESLFKENYCADEYST 515
L+ +Y+ G++W +AP+P + + A E T
Sbjct: 136 DLLLEYFASGSRWLSAPKPRLTDDSYAPQAPAGERLT 172
>sp|Q54258|STRB1_STRGA Inosamine-phosphate amidinotransferase I (Aminocyclitol
amidinotransferase) (ADT)
Length = 348
Score = 61.6 bits (148), Expect = 1e-09
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 2/158 (1%)
Frame = +3
Query: 18 DPLEEIVSRTPEMACCPEVLPEAQACISENKFDFLI-VSLCKHRKKVI-EPENYRLMLNE 191
DPLEEI+ T A P A +++D V + +V+ E E +L+E
Sbjct: 11 DPLEEIIVGTAVGARVPRADRSVFAVEYADEYDSQDQVPAGPYPDRVLKETEEELHVLSE 70
Query: 192 HSNFINFL*GEGVKVVHPDSVDFAKTFKTPNFSAHGVDCAMpreFLLVVGDEMIESTMTW 371
+ GV V P D + TP++ G PR+ LL VG +IES M
Sbjct: 71 ELTKL------GVTVRRPGQRDNSALVATPDWQTDGFHDYCPRDGLLAVGQTVIESPMAL 124
Query: 372 RSGYFEFMCYRTLIKDYWRHGAKWTAAPRPMCRESLFK 485
R+ + E + Y+ ++ +Y+ GA+W +AP+P + +++
Sbjct: 125 RARFLESLAYKDILLEYFASGARWLSAPKPRLADEMYE 162
>sp|Q54264|STRB2_STRGA Putative inosamine-phosphate amidinotransferase II (Aminocyclitol
amidinotransferase) (ADT)
Length = 319
Score = 36.2 bits (82), Expect = 0.053
Identities = 25/96 (26%), Positives = 42/96 (43%)
Frame = +3
Query: 219 GEGVKVVHPDSVDFAKTFKTPNFSAHGVDCAMpreFLLVVGDEMIESTMTWRSGYFEFMC 398
G GV V D A P+ A PR+ LL VG+ +I++ +
Sbjct: 45 GLGVTVRRLPPQDPASPPAPPDRGADTALAYRPRDGLLTVGETVIQTPAVPGLPSLQSPA 104
Query: 399 YRTLIKDYWRHGAKWTAAPRPMCRESLFKENYCADE 506
R L+ +Y+ G++W +AP P+ + ++ A E
Sbjct: 105 CRMLLMEYFTSGSRWISAPPPVLTDVMYDPTAPAGE 140
>sp|Q8MA72|MATK_BYBLI Maturase K (Intron maturase)
Length = 513
Score = 30.4 bits (67), Expect = 2.9
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 69 EVLPEAQACISENKFDFLIVSLCKHRKKVIEPENYRLMLNEHSNF 203
+++ E ACI E F ++L +KK+++P+N R + HS F
Sbjct: 92 QIISEVFACIVEIPFSIPYINLEWKKKKIVKPQNLRSI---HSTF 133
>sp|P44542|Y146_HAEIN Protein HI0146 precursor
Length = 329
Score = 29.3 bits (64), Expect = 6.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 174 RLMLNEHSNFINFL*GEGVKVVHPDSVDFAKTFK 275
+L ++ + + F +GVK+ HPD V F ++ K
Sbjct: 270 KLFVDGEKDLVTFFEKQGVKITHPDLVPFKESMK 303
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,135,026
Number of Sequences: 369166
Number of extensions: 1168224
Number of successful extensions: 2930
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2925
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3783975580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)