Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_M14
(333 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42724|TFXB_RHILT Trifolitoxin processing protein tfxB 30 1.7
sp|Q07001|ACHD_HUMAN Acetylcholine receptor protein, delta ... 28 6.6
sp|P76463|YFAQ_ECOLI Hypothetical protein yfaQ precursor 28 6.6
>sp|P42724|TFXB_RHILT Trifolitoxin processing protein tfxB
Length = 373
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +1
Query: 61 WADGENVPKGAVVGGINDGQPLYVARSNVGGQVVVGKYFPQHGCGYFPYGGEEHRVDSVE 240
+A GE++ K GG AR + VVVG G + Y HR+D++E
Sbjct: 213 YATGEHLRKAVPSGG---------ARHPIEFYVVVGDEIAGIEAGVYHYNVRHHRLDAIE 263
Query: 241 VLCCSTK 261
+ S K
Sbjct: 264 IASTSLK 270
>sp|Q07001|ACHD_HUMAN Acetylcholine receptor protein, delta subunit precursor
Length = 517
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 180 WKIFSNNNLSANITSCNVKWLPIIYTTNNSSFWYVFPISPSPLSNLYGLKYLIPPKL 10
W N+S ++ WLP I NN+ + S + L YG Y +PP +
Sbjct: 90 WNAEEFGNISVLRLPPDMVWLPEIVLENNNDGSFQISYSCNVLVYHYGFVYWLPPAI 146
>sp|P76463|YFAQ_ECOLI Hypothetical protein yfaQ precursor
Length = 549
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 40 IKVT*WRWA--DGENVPKGAVVGGINDGQPLYVARSNVGGQVV 162
++V W W D + + +G G + DG PL+V S V+
Sbjct: 192 VRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVL 234
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,877,838
Number of Sequences: 369166
Number of extensions: 815285
Number of successful extensions: 2379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2375
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1726260800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)