Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_005_M10 (865 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P42638|TPM2_SCHMA Tropomyosin 2 (TMII) 327 3e-89 sp|P43689|TPM2_BIOGL Tropomyosin 2 (TMII) 319 5e-87 sp|P42637|TPM1_SCHMA Tropomyosin 1 (TMI) (Polypeptide 49) 318 9e-87 sp|Q95PU1|TPM_ECHMU Tropomyosin 317 2e-86 sp|Q26519|TPM_SCHJA Tropomyosin 317 3e-86 sp|Q26503|TPM_SCHHA Tropomyosin 315 1e-85 sp|O97192|TPM_HELAS Tropomyosin (Allergen Hel as 1) 310 3e-84 sp|Q9GZ71|TPM_HALDV Tropomyosin 310 4e-84 sp|P42636|TPM1_BIOGL Tropomyosin 1 (TMI) (Bg 39) 306 5e-83 sp|Q23758|TPM_CLOSI Tropomyosin 302 9e-82
>sp|P42638|TPM2_SCHMA Tropomyosin 2 (TMII) Length = 284 Score = 327 bits (837), Expect = 3e-89 Identities = 177/275 (64%), Positives = 206/275 (74%) Frame = +1 Query: 1 LSMKMEKENAMDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQVQTDCETAKEALKEVN 180 L+MK++KENA+DEA QV TD ETA+ L E N Sbjct: 9 LAMKLDKENAVDEADQLEAKLREKELEMQTKDEEVAEVLKKIQQVDTDKETAQTQLAETN 68 Query: 181 SNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYEEASKAADESERGRK 360 + LE T+KRA EAE EV +L KRIR LED+LE TETRLQEAT K EEASKAADES+RGRK Sbjct: 69 TKLEETDKRATEAEAEVASLQKRIRQLEDELESTETRLQEATVKLEEASKAADESDRGRK 128 Query: 361 VLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAITEVDLERAESRLESADS 540 VLE R+ ADEER+ QLEEQLKE+ ++AEDADRKYDEAARKLAITEV+LERAESRLE+A+S Sbjct: 129 VLENRTFADEERINQLEEQLKESTFMAEDADRKYDEAARKLAITEVELERAESRLEAAES 188 Query: 541 KVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDKLKSTEQRATEAERQVAT 720 K+ R+VGNN+KSLEISEQEA QREE YEE IRDL+++LK+ E RA E+ER V T Sbjct: 189 KITELEEELRIVGNNVKSLEISEQEAAQREEAYEENIRDLTERLKAAEDRAQESERLVNT 248 Query: 721 LQTEVDRIEDELLAEKEKYKQLSEELDSAFAELTG 825 LQ + DR+EDEL+ EKEKYK LSEELDS FAELTG Sbjct: 249 LQADADRLEDELVTEKEKYKALSEELDSTFAELTG 283
>sp|P43689|TPM2_BIOGL Tropomyosin 2 (TMII) Length = 284 Score = 319 bits (818), Expect = 5e-87 Identities = 172/276 (62%), Positives = 203/276 (73%) Frame = +1 Query: 1 LSMKMEKENAMDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQVQTDCETAKEALKEVN 180 L+MKMEKENA+D A + +Q D +TA E L E Sbjct: 9 LAMKMEKENAIDRAEQMEQKVRDVEETKNKLEEEFNNLQKKFSNLQNDFDTANEGLTEAQ 68 Query: 181 SNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYEEASKAADESERGRK 360 + LEA+EK E E + L +RI+LLE+DLE++E RLQ AT K EEASKAADESERGRK Sbjct: 69 TKLEASEKHVAELESDTAGLNRRIQLLEEDLERSEERLQSATEKLEEASKAADESERGRK 128 Query: 361 VLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAITEVDLERAESRLESADS 540 VLE+RS+AD+ERL LE QLKEAKYIAEDA+RKYDEAARKLAITEVDLERAE+RLE+A++ Sbjct: 129 VLESRSLADDERLDGLEAQLKEAKYIAEDAERKYDEAARKLAITEVDLERAEARLEAAEA 188 Query: 541 KVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDKLKSTEQRATEAERQVAT 720 K+ +VVGNNMKSLEISEQEA QRE+ YEETIRDL+ +LK E RATEAER V+ Sbjct: 189 KIIELEEELKVVGNNMKSLEISEQEASQREDSYEETIRDLTQRLKDAENRATEAERTVSK 248 Query: 721 LQTEVDRIEDELLAEKEKYKQLSEELDSAFAELTGY 828 LQ EVDR+EDELLAEKE+YK +S+ELDS FAEL GY Sbjct: 249 LQKEVDRLEDELLAEKERYKSISDELDSTFAELAGY 284
>sp|P42637|TPM1_SCHMA Tropomyosin 1 (TMI) (Polypeptide 49) Length = 284 Score = 318 bits (816), Expect = 9e-87 Identities = 172/276 (62%), Positives = 203/276 (73%) Frame = +1 Query: 1 LSMKMEKENAMDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQVQTDCETAKEALKEVN 180 ++MK+EKENAM+ A Q Q DC+ A+E L+E Sbjct: 9 IAMKLEKENAMERAVQYEELLKKKEEEREKRESEIAELNNKMKQAQIDCDEAQETLQEQM 68 Query: 181 SNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYEEASKAADESERGRK 360 + LE T+KRA AE EV A+T+RIRLLE+DLE + +RL E K EEASK A+ESERGRK Sbjct: 69 NKLEETDKRATNAEAEVAAMTRRIRLLEEDLEVSSSRLTETLTKLEEASKTAEESERGRK 128 Query: 361 VLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAITEVDLERAESRLESADS 540 LE RSIAD+ERL QLE+Q KEAKYIAEDADRKYDEAARKLAI EVD ERAE+RLE+A+S Sbjct: 129 DLEIRSIADDERLNQLEDQQKEAKYIAEDADRKYDEAARKLAIAEVDFERAEARLEAAES 188 Query: 541 KVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDKLKSTEQRATEAERQVAT 720 K+ RVVGNNMK+LEISEQE+ QREE YEETIRDL+++LK+ EQRATEAERQV+ Sbjct: 189 KIVELEEELRVVGNNMKALEISEQESAQREESYEETIRDLTERLKAAEQRATEAERQVSK 248 Query: 721 LQTEVDRIEDELLAEKEKYKQLSEELDSAFAELTGY 828 LQ EVD +ED+LLAEKE+YK LS ELD FAELTGY Sbjct: 249 LQNEVDHLEDDLLAEKERYKALSGELDQTFAELTGY 284
>sp|Q95PU1|TPM_ECHMU Tropomyosin Length = 284 Score = 317 bits (813), Expect = 2e-86 Identities = 164/276 (59%), Positives = 211/276 (76%) Frame = +1 Query: 1 LSMKMEKENAMDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQVQTDCETAKEALKEVN 180 ++MK+EKENA+++A +QT+ +T +E+L+E Sbjct: 9 MAMKLEKENALEKAINLENQLKEKAKDFEKKEEEMNDWLSKVKNIQTEVDTVQESLQEAI 68 Query: 181 SNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYEEASKAADESERGRK 360 S LE TEKRA AE EV A+T+RIRLLE+D EQ+ RL E + K ++ASKAA+ESER RK Sbjct: 69 SKLEETEKRATNAEAEVAAMTRRIRLLEEDFEQSSGRLTETSTKLDDASKAAEESERNRK 128 Query: 361 VLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAITEVDLERAESRLESADS 540 LETRSI+D+ER+AQLEEQ+KEAKYIAEDA+RKYDEAAR+LA+TEVDLERAESRLE+++S Sbjct: 129 TLETRSISDDERMAQLEEQVKEAKYIAEDAERKYDEAARRLAVTEVDLERAESRLETSES 188 Query: 541 KVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDKLKSTEQRATEAERQVAT 720 K+ R+VGNNMKSLE+SEQE++QREE YEETIRDL+++LK+ EQRA EAERQV+ Sbjct: 189 KIVELEEELRIVGNNMKSLEVSEQESLQREESYEETIRDLTERLKTAEQRAAEAERQVSK 248 Query: 721 LQTEVDRIEDELLAEKEKYKQLSEELDSAFAELTGY 828 LQ EVDR+EDELL+EKE+Y+ +S ELD+ FAELT + Sbjct: 249 LQNEVDRLEDELLSEKERYRAISGELDTTFAELTSF 284
Score = 33.5 bits (75), Expect = 0.79 Identities = 18/93 (19%), Positives = 47/93 (50%) Frame = +1 Query: 574 VGNNMKSLEISEQEAVQREEVYEETIRDLSDKLKSTEQRATEAERQVATLQTEVDRIEDE 753 + M ++++ ++ A+++ E +++ + + E+ + +V +QTEVD +++ Sbjct: 4 IKKKMMAMKLEKENALEKAINLENQLKEKAKDFEKKEEEMNDWLSKVKNIQTEVDTVQES 63 Query: 754 LLAEKEKYKQLSEELDSAFAELTGY*GRRYQLI 852 L K ++ + +A AE+ RR +L+ Sbjct: 64 LQEAISKLEETEKRATNAEAEVAAM-TRRIRLL 95
>sp|Q26519|TPM_SCHJA Tropomyosin Length = 284 Score = 317 bits (812), Expect = 3e-86 Identities = 171/276 (61%), Positives = 202/276 (73%) Frame = +1 Query: 1 LSMKMEKENAMDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQVQTDCETAKEALKEVN 180 ++MK+EKENAM+ A Q Q DC+ +E L+E Sbjct: 9 IAMKLEKENAMERAVQYEELLKKKEEEREKRENEISELNTKMKQAQIDCDEVQETLQEQM 68 Query: 181 SNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYEEASKAADESERGRK 360 + LE TEKRA AE +V A+T+RIRLLE+DLE + +RL E K EEASK A+ESERGRK Sbjct: 69 NKLEETEKRATNAEAQVAAMTRRIRLLEEDLEVSSSRLTETLTKLEEASKTAEESERGRK 128 Query: 361 VLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAITEVDLERAESRLESADS 540 LE RSIAD+ERL QLE+Q KEAKYIAEDADRKYDEAARKLAI EVD ERAE+RLE+A+S Sbjct: 129 DLEIRSIADDERLNQLEDQQKEAKYIAEDADRKYDEAARKLAIAEVDFERAEARLEAAES 188 Query: 541 KVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDKLKSTEQRATEAERQVAT 720 K+ RVVGNNMK+LEISEQE+ QREE YEETIRDL+++LK+ EQRATEAERQV+ Sbjct: 189 KIVELEEELRVVGNNMKALEISEQESAQREESYEETIRDLTERLKAAEQRATEAERQVSK 248 Query: 721 LQTEVDRIEDELLAEKEKYKQLSEELDSAFAELTGY 828 LQ EVD +ED+LLAEKE+YK LS ELD FAELTGY Sbjct: 249 LQNEVDHLEDDLLAEKERYKALSGELDQTFAELTGY 284
>sp|Q26503|TPM_SCHHA Tropomyosin Length = 284 Score = 315 bits (807), Expect = 1e-85 Identities = 169/276 (61%), Positives = 202/276 (73%) Frame = +1 Query: 1 LSMKMEKENAMDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQVQTDCETAKEALKEVN 180 ++MK+EKENAM+ A Q Q DC+ +E L+E Sbjct: 9 IAMKLEKENAMERAVQYEELLKKKEEEREKRESEIAELNTKMKQAQIDCDEVQETLQEQM 68 Query: 181 SNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYEEASKAADESERGRK 360 + LE T+KRA AE EV A+T+RIRLLE+DLE + +RL E K EEASK A+ESERGRK Sbjct: 69 NKLEETDKRATNAEAEVAAMTRRIRLLEEDLEVSSSRLTETLTKLEEASKTAEESERGRK 128 Query: 361 VLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAITEVDLERAESRLESADS 540 LE RSIAD+ERL QLE+Q KEAKYIAEDADRKYDEAARKLAI EVD +RAE+RLE+A+S Sbjct: 129 DLEIRSIADDERLNQLEDQQKEAKYIAEDADRKYDEAARKLAIAEVDFKRAEARLEAAES 188 Query: 541 KVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDKLKSTEQRATEAERQVAT 720 K+ RV+GNNMK+LEISEQE+ QREE YEETIRDL+++LK+ EQRATEAERQV+ Sbjct: 189 KIVELEEELRVIGNNMKALEISEQESAQREESYEETIRDLTERLKAAEQRATEAERQVSK 248 Query: 721 LQTEVDRIEDELLAEKEKYKQLSEELDSAFAELTGY 828 LQ EVD +ED+LLAEKE+YK LS ELD FAELTGY Sbjct: 249 LQNEVDHLEDDLLAEKERYKALSGELDQTFAELTGY 284
>sp|O97192|TPM_HELAS Tropomyosin (Allergen Hel as 1) Length = 284 Score = 310 bits (794), Expect = 3e-84 Identities = 168/276 (60%), Positives = 202/276 (73%) Frame = +1 Query: 1 LSMKMEKENAMDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQVQTDCETAKEALKEVN 180 L+MKMEKENA+D A ++ D ++ E L + N Sbjct: 9 LAMKMEKENALDRAEQVEQKLRDCECNKNKVEEDLNNLQKKFAILENDFDSINEQLLDAN 68 Query: 181 SNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYEEASKAADESERGRK 360 + LEA+EK+ E E E L +RI+LLE+DLE++E RLQ AT K EEASKAADESERGRK Sbjct: 69 TKLEASEKKNAEIESETAGLQRRIQLLEEDLERSEERLQSATEKLEEASKAADESERGRK 128 Query: 361 VLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAITEVDLERAESRLESADS 540 VLE+RS+AD+ERL LE QLKEAKYIAEDA+RK+DEAARKLAITEVDLERAE+RLE+A++ Sbjct: 129 VLESRSLADDERLDGLEAQLKEAKYIAEDAERKFDEAARKLAITEVDLERAEARLEAAEA 188 Query: 541 KVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDKLKSTEQRATEAERQVAT 720 K+ +VVGNNMKSLEISEQEA QRE+ YEETIRDL+ +LK E RA+EAER V+ Sbjct: 189 KILELEEELKVVGNNMKSLEISEQEASQREDSYEETIRDLTQRLKDAENRASEAERTVSK 248 Query: 721 LQTEVDRIEDELLAEKEKYKQLSEELDSAFAELTGY 828 LQ EVDR+EDELLAEKE+YK S+ELDS FAEL GY Sbjct: 249 LQKEVDRLEDELLAEKERYKATSDELDSTFAELAGY 284
>sp|Q9GZ71|TPM_HALDV Tropomyosin Length = 284 Score = 310 bits (793), Expect = 4e-84 Identities = 167/276 (60%), Positives = 199/276 (72%) Frame = +1 Query: 1 LSMKMEKENAMDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQVQTDCETAKEALKEVN 180 L+MKMEKENA+D A ++ D + E L+E Sbjct: 9 LAMKMEKENAVDRAEQNEQKLRDTEEQKAKIEEDLNNLQKKCANLENDFDNVNEQLQEAM 68 Query: 181 SNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYEEASKAADESERGRK 360 + LE +EKR E E EV T++I LLE+DLE+ E RLQ AT + EEASKAADESERG + Sbjct: 69 AKLETSEKRVTEMEQEVSGTTRKITLLEEDLERNEERLQTATERLEEASKAADESERGAR 128 Query: 361 VLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAITEVDLERAESRLESADS 540 VLE+RS+AD+ER+ QLE QLKEAKYIAEDA+RKYDEAARKLAITEVDLERAE+RLE+A++ Sbjct: 129 VLESRSLADDERIDQLEAQLKEAKYIAEDAERKYDEAARKLAITEVDLERAEARLEAAEA 188 Query: 541 KVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDKLKSTEQRATEAERQVAT 720 K+ +VVGNNMKSLEISEQEA QRE+ YEETIRDL+ +LK E RATEAER V+ Sbjct: 189 KILELEEELKVVGNNMKSLEISEQEASQREDSYEETIRDLTQRLKDAENRATEAERTVSK 248 Query: 721 LQTEVDRIEDELLAEKEKYKQLSEELDSAFAELTGY 828 LQ EVDR+EDELLAEKEKYK +S+ELD FAEL GY Sbjct: 249 LQKEVDRLEDELLAEKEKYKAISDELDQTFAELAGY 284
>sp|P42636|TPM1_BIOGL Tropomyosin 1 (TMI) (Bg 39) Length = 284 Score = 306 bits (784), Expect = 5e-83 Identities = 164/276 (59%), Positives = 198/276 (71%) Frame = +1 Query: 1 LSMKMEKENAMDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQVQTDCETAKEALKEVN 180 L+MKMEKENA+D A + +Q D +TA E L E Sbjct: 9 LAMKMEKENAIDRAEQMEQKLRDVEETKNKLEEEFNNLQNKFSNLQNDFDTANEGLTEAQ 68 Query: 181 SNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYEEASKAADESERGRK 360 + LEA+EK E E + L +RI+LLE+DLE++E RLQ AT K EEASKAADESERGRK Sbjct: 69 TKLEASEKHVAELESDTAGLNRRIQLLEEDLERSEERLQSATEKLEEASKAADESERGRK 128 Query: 361 VLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAITEVDLERAESRLESADS 540 VLE+RS+AD+ERL LE QLKEAKYIAEDA+RKYDEAARKLAITEVDLERAE+RLE+A++ Sbjct: 129 VLESRSLADDERLDGLEAQLKEAKYIAEDAERKYDEAARKLAITEVDLERAEARLEAAEA 188 Query: 541 KVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDKLKSTEQRATEAERQVAT 720 KV +VGNN+K+L I +A QRE+ Y+ETIRDL+ +LK E RATEAER V+ Sbjct: 189 KVWELDEELHIVGNNIKTLSIQNDQASQREDSYQETIRDLTQRLKDAENRATEAERTVSK 248 Query: 721 LQTEVDRIEDELLAEKEKYKQLSEELDSAFAELTGY 828 LQ EVDR+EDELLAEKE+YK +S+ELDS FAEL GY Sbjct: 249 LQKEVDRLEDELLAEKERYKSISDELDSTFAELAGY 284
>sp|Q23758|TPM_CLOSI Tropomyosin Length = 284 Score = 302 bits (773), Expect = 9e-82 Identities = 162/276 (58%), Positives = 199/276 (72%) Frame = +1 Query: 1 LSMKMEKENAMDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQVQTDCETAKEALKEVN 180 ++MK+EKENAM+ A Q QT+ + +EAL++ Sbjct: 9 IAMKLEKENAMERAVQYEAQLKQKEEEQEKKETEIGELNNRMKQAQTELDEIQEALQDSL 68 Query: 181 SNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYEEASKAADESERGRK 360 + +E T+KRA AE EV +T+RIRLLE+DLE + +RL E K++EASK A+ESERGRK Sbjct: 69 NKMEETDKRATNAEAEVARMTRRIRLLEEDLEVSSSRLTETLAKFDEASKTAEESERGRK 128 Query: 361 VLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAITEVDLERAESRLESADS 540 LE RSIAD+E L+QLE+Q KE KYIAEDADRKYDEAARKLAI EVD ERAESRLE+A+S Sbjct: 129 ELEIRSIADDEGLSQLEDQQKEGKYIAEDADRKYDEAARKLAIVEVDFERAESRLEAAES 188 Query: 541 KVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDKLKSTEQRATEAERQVAT 720 K+ RVVGNNMK+LEISEQE+ QREE YEETIRDL+++LK+ EQRA EAERQV+ Sbjct: 189 KIVELEEELRVVGNNMKALEISEQESAQREESYEETIRDLTERLKAAEQRAAEAERQVSK 248 Query: 721 LQTEVDRIEDELLAEKEKYKQLSEELDSAFAELTGY 828 LQ EVD +ED+LL+EK +YK LS LD FAELTGY Sbjct: 249 LQNEVDHLEDDLLSEKIRYKDLSGGLDQTFAELTGY 284
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.307 0.124 0.306 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,575,982 Number of Sequences: 369166 Number of extensions: 834657 Number of successful extensions: 7385 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5046 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6505 length of database: 68,354,980 effective HSP length: 109 effective length of database: 48,218,865 effective search space used: 8582957970 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits)