Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_L19
(468 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5RAP9|AT5G2_PONPY ATP synthase lipid-binding protein, m... 93 3e-19
sp|Q06055|AT5G2_HUMAN ATP synthase lipid-binding protein, m... 93 3e-19
sp|P32876|AT5G1_BOVIN ATP synthase lipid-binding protein, m... 92 4e-19
sp|Q9U505|ATP9_MANSE ATP synthase lipid-binding protein, mi... 92 8e-19
sp|Q71S46|AT5G3_RAT ATP synthase lipid-binding protein, mit... 91 1e-18
sp|Q5RFL2|AT5G3_PONPY ATP synthase lipid-binding protein, m... 91 1e-18
sp|Q06056|AT5G2_SHEEP ATP synthase lipid-binding protein, m... 91 2e-18
sp|Q06646|AT5G2_RAT ATP synthase lipid-binding protein, mit... 91 2e-18
sp|P07926|AT5G2_BOVIN ATP synthase lipid-binding protein, m... 91 2e-18
sp|P56383|AT5G2_MOUSE ATP synthase lipid-binding protein, m... 91 2e-18
>sp|Q5RAP9|AT5G2_PONPY ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 141
Score = 93.2 bits (230), Expect = 3e-19
Identities = 52/93 (55%), Positives = 61/93 (65%)
Frame = +2
Query: 86 LSPVVSNKDCQLHTSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPG 265
L+ +VS+++ Q TSA+ DID FGSL+IGYARNP
Sbjct: 50 LTSLVSSRNFQ--TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPS 107
Query: 266 LKQQLFSYAILGFALSEAMGLFCLMMAFLILYA 364
LKQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 108 LKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 140
>sp|Q06055|AT5G2_HUMAN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 141
Score = 92.8 bits (229), Expect = 3e-19
Identities = 52/93 (55%), Positives = 60/93 (64%)
Frame = +2
Query: 86 LSPVVSNKDCQLHTSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPG 265
L+ +VS++ Q TSA+ DID FGSL+IGYARNP
Sbjct: 50 LTSLVSSRSFQ--TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPS 107
Query: 266 LKQQLFSYAILGFALSEAMGLFCLMMAFLILYA 364
LKQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 108 LKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 140
>sp|P32876|AT5G1_BOVIN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P1) (ATPase protein 9) (ATPase
subunit C)
Length = 136
Score = 92.4 bits (228), Expect = 4e-19
Identities = 55/111 (49%), Positives = 65/111 (58%), Gaps = 6/111 (5%)
Frame = +2
Query: 50 VMRTFLTK-NVQKLSPVVSNKDCQL-----HTSAVKNDIDQXXXXXXXXXXXXXXXXXXX 211
V +FL++ +Q + P S+ Q+ TS V DID
Sbjct: 25 VSASFLSRPEIQSVQPSYSSGPLQVARREFQTSVVSRDIDTAAKFIGAGAATVGVAGSGA 84
Query: 212 XXXXXFGSLVIGYARNPGLKQQLFSYAILGFALSEAMGLFCLMMAFLILYA 364
FGSL+IGYARNP LKQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 85 GIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 135
>sp|Q9U505|ATP9_MANSE ATP synthase lipid-binding protein, mitochondrial precursor (ATPase
protein 9) (ATPase subunit C)
Length = 131
Score = 91.7 bits (226), Expect = 8e-19
Identities = 48/81 (59%), Positives = 53/81 (65%)
Frame = +2
Query: 125 TSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQLFSYAILGF 304
T++V DID FGSL+IGYARNP LKQQLFSYAILGF
Sbjct: 51 TTSVTKDIDSAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF 110
Query: 305 ALSEAMGLFCLMMAFLILYAF 367
ALSEAMGLFCLMMAFL+L+AF
Sbjct: 111 ALSEAMGLFCLMMAFLLLFAF 131
>sp|Q71S46|AT5G3_RAT ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P3) (ATPase protein 9) (ATPase
subunit C)
sp|P48201|AT5G3_HUMAN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P3) (ATPase protein 9) (ATPase
subunit C)
Length = 142
Score = 91.3 bits (225), Expect = 1e-18
Identities = 48/83 (57%), Positives = 53/83 (63%)
Frame = +2
Query: 116 QLHTSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQLFSYAI 295
+ TSA+ DID FGSL+IGYARNP LKQQLFSYAI
Sbjct: 59 EFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAI 118
Query: 296 LGFALSEAMGLFCLMMAFLILYA 364
LGFALSEAMGLFCLM+AFLIL+A
Sbjct: 119 LGFALSEAMGLFCLMVAFLILFA 141
>sp|Q5RFL2|AT5G3_PONPY ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P3) (ATPase protein 9) (ATPase
subunit C)
Length = 142
Score = 91.3 bits (225), Expect = 1e-18
Identities = 48/83 (57%), Positives = 53/83 (63%)
Frame = +2
Query: 116 QLHTSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQLFSYAI 295
+ TSA+ DID FGSL+IGYARNP LKQQLFSYAI
Sbjct: 59 EFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAI 118
Query: 296 LGFALSEAMGLFCLMMAFLILYA 364
LGFALSEAMGLFCLM+AFLIL+A
Sbjct: 119 LGFALSEAMGLFCLMVAFLILFA 141
>sp|Q06056|AT5G2_SHEEP ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 143
Score = 90.5 bits (223), Expect = 2e-18
Identities = 48/80 (60%), Positives = 52/80 (65%)
Frame = +2
Query: 125 TSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQLFSYAILGF 304
TSA+ DID FGSL+IGYARNP LKQQLFSYAILGF
Sbjct: 63 TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF 122
Query: 305 ALSEAMGLFCLMMAFLILYA 364
ALSEAMGLFCLM+AFLIL+A
Sbjct: 123 ALSEAMGLFCLMVAFLILFA 142
>sp|Q06646|AT5G2_RAT ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 141
Score = 90.5 bits (223), Expect = 2e-18
Identities = 48/80 (60%), Positives = 52/80 (65%)
Frame = +2
Query: 125 TSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQLFSYAILGF 304
TSA+ DID FGSL+IGYARNP LKQQLFSYAILGF
Sbjct: 61 TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF 120
Query: 305 ALSEAMGLFCLMMAFLILYA 364
ALSEAMGLFCLM+AFLIL+A
Sbjct: 121 ALSEAMGLFCLMVAFLILFA 140
>sp|P07926|AT5G2_BOVIN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 143
Score = 90.5 bits (223), Expect = 2e-18
Identities = 48/80 (60%), Positives = 52/80 (65%)
Frame = +2
Query: 125 TSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQLFSYAILGF 304
TSA+ DID FGSL+IGYARNP LKQQLFSYAILGF
Sbjct: 63 TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF 122
Query: 305 ALSEAMGLFCLMMAFLILYA 364
ALSEAMGLFCLM+AFLIL+A
Sbjct: 123 ALSEAMGLFCLMVAFLILFA 142
>sp|P56383|AT5G2_MOUSE ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 146
Score = 90.5 bits (223), Expect = 2e-18
Identities = 48/80 (60%), Positives = 52/80 (65%)
Frame = +2
Query: 125 TSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQLFSYAILGF 304
TSA+ DID FGSL+IGYARNP LKQQLFSYAILGF
Sbjct: 66 TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF 125
Query: 305 ALSEAMGLFCLMMAFLILYA 364
ALSEAMGLFCLM+AFLIL+A
Sbjct: 126 ALSEAMGLFCLMVAFLILFA 145
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,677,544
Number of Sequences: 369166
Number of extensions: 796697
Number of successful extensions: 2565
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2565
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)