Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_L13
(713 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q86Y39|N5BM_HUMAN NADH-ubiquinone oxidoreductase subunit... 40 0.006
sp|P22170|TGB2_FXMV TGB2 protein (Triple gene block 2 prote... 37 0.068
sp|Q80W89|N5BM_RAT NADH-ubiquinone oxidoreductase subunit B... 37 0.068
sp|P46358|RFAY_XANCP Probable RNA polymerase sigma factor rfaY 34 0.34
sp|Q9D8B4|N5BM_MOUSE NADH-ubiquinone oxidoreductase subunit... 34 0.34
sp|Q8HXG6|N5BM_BOVIN NADH-ubiquinone oxidoreductase subunit... 34 0.44
sp|P30304|MPIP1_HUMAN M-phase inducer phosphatase 1 (Dual s... 31 3.7
sp|Q89A23|Y532_BUCBP Hypothetical transport protein bbp532 31 3.7
sp|P21906|GLF_ZYMMO Glucose facilitated diffusion protein 30 4.9
>sp|Q86Y39|N5BM_HUMAN NADH-ubiquinone oxidoreductase subunit B14.7 (Complex I-B14.7)
(CI-B14.7)
Length = 141
Score = 40.0 bits (92), Expect = 0.006
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 267 VGSVTGYMLTGAMGGALYTMTATSSSFVRGNKDTPLNHFLAGTITSLFMLKPPYIYR-KV 443
V V Y T A GA++ +T S+ VR D PLN+FL G L + + Y
Sbjct: 53 VAKVGQYTFTAAAVGAVFGLTTCISAHVREKPDDPLNYFLGGCAGGLTLGARTHNYGIGA 112
Query: 444 VLSISIGIVCSIVKM 488
+ GI S+VKM
Sbjct: 113 AACVYFGIAASLVKM 127
>sp|P22170|TGB2_FXMV TGB2 protein (Triple gene block 2 protein) (TGBp2) (12 kDa protein)
(ORF 3 protein)
Length = 105
Score = 36.6 bits (83), Expect = 0.068
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Frame = +3
Query: 387 AGTITSLFMLKPPYIYRKVVLSISIGIVCSIV-KMLTMNDCTRVMPNNNNL-----FIES 548
A I++ L+PP K +L+++IGI S+V MLT N+ V N ++L +I+
Sbjct: 9 APAISTPLTLRPPPDNTKAILTVAIGIAASLVFFMLTRNNLPHVGDNIHSLPHGGSYIDG 68
Query: 549 ----GYRKPMAHYALKNMLGIPSYDMKPDY 626
YR P + Y N+L + + P Y
Sbjct: 69 TKSINYRPPASRYPSSNLL-VSLHQYSPQY 97
>sp|Q80W89|N5BM_RAT NADH-ubiquinone oxidoreductase subunit B14.7 (Complex I-B14.7)
(CI-B14.7)
Length = 141
Score = 36.6 bits (83), Expect = 0.068
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Frame = +3
Query: 168 SKMRRGAMIGFALNSLNAF--SILSVAENLTPSIL--VGSVTGYMLTGAMGGALYTMTAT 335
++ R A I AL L S S+ N S L V V + T A GA++ +T
Sbjct: 16 TQCHRKAYITTALGGLCGLISSAYSITHNPADSPLEAVARVGRFTFTAAAIGAMFGLTTC 75
Query: 336 SSSFVRGNKDTPLNHFLAGTITSLFMLKPPYIYRKVVLS-ISIGIVCSIVKM 488
S+ VR D PLN+F+ G L + + Y + + +G ++ KM
Sbjct: 76 VSAQVREKPDDPLNYFIGGCAGGLTLGARTHSYGTAAIGCVYMGTAAALFKM 127
>sp|P46358|RFAY_XANCP Probable RNA polymerase sigma factor rfaY
Length = 400
Score = 34.3 bits (77), Expect = 0.34
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Frame = +3
Query: 162 GFSKMRRGAMIGFALNSLNAFSILSVAENLTPSILVGSVTGYMLTGAMGGAL---YTMTA 332
G K+ + G AL S +A LSV + +I + ++TG LT M GA + TA
Sbjct: 231 GVGKLGASGLSGSALTSGSAAGALSVLLGMPMAIALLAITGVTLTTYMSGAYLLRFATTA 290
Query: 333 TSSSFVRG--NKDTPLNHFLAGTITSLFMLKPPYIYRKVVLSISIGIVC 473
++ +RG T G L P VL++ + +VC
Sbjct: 291 REAAAIRGFTRLSTLTAALTCGAPLLLRAFGAPKWLALCVLAVGMSVVC 339
>sp|Q9D8B4|N5BM_MOUSE NADH-ubiquinone oxidoreductase subunit B14.7 (Complex I-B14.7)
(CI-B14.7)
Length = 141
Score = 34.3 bits (77), Expect = 0.34
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 267 VGSVTGYMLTGAMGGALYTMTATSSSFVRGNKDTPLNHFLAGTITSLFMLKPPYIYRKVV 446
V V Y T A GA++ +T S+ VR D PLN+F+ G L + + Y
Sbjct: 53 VARVGRYTFTAAAIGAMFGLTTCVSAQVREKPDDPLNYFIGGCAGGLTLGARTHSYGTAA 112
Query: 447 LS-ISIGIVCSIVKM 488
+ + +G ++ K+
Sbjct: 113 MGCVYMGTAAALFKI 127
>sp|Q8HXG6|N5BM_BOVIN NADH-ubiquinone oxidoreductase subunit B14.7 (Complex I-B14.7)
(CI-B14.7)
Length = 141
Score = 33.9 bits (76), Expect = 0.44
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = +3
Query: 225 SILSVAENLTPSILVGSV-TG-YMLTGAMGGALYTMTATSSSFVRGNKDTPLNHFLAGTI 398
S SVA S L G TG Y T A GA++ +T+ S+ VR D PLN+ + G
Sbjct: 37 SAYSVALKTPTSFLEGVARTGRYTFTAAAIGAIFGLTSCISAQVREKPDDPLNYLIGGCA 96
Query: 399 TSLFMLKPPYIYRKVVLSIS-IGIVCSIVKM 488
L + Y + + +G+ ++VKM
Sbjct: 97 GGLILGARTRSYGIGAAACAYMGLTAALVKM 127
>sp|P30304|MPIP1_HUMAN M-phase inducer phosphatase 1 (Dual specificity phosphatase Cdc25A)
Length = 524
Score = 30.8 bits (68), Expect = 3.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 425 IYL*KSGFKHFYWNCLFYCEDADYERLYSCDAQQ 526
+Y+ K G+K F+ C YCE Y ++ D ++
Sbjct: 463 LYVLKGGYKEFFMKCQSYCEPPSYRPMHHEDFKE 496
>sp|Q89A23|Y532_BUCBP Hypothetical transport protein bbp532
Length = 403
Score = 30.8 bits (68), Expect = 3.7
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +3
Query: 186 AMIGFALNSLNAFSILSVAENLTPSILVGSVTGYMLTGAMGGAL-YTMTATSSSFVRGNK 362
A+ G AL+ + A ++ ++E + PS+L S+ Y+ +GG L +++ S + N
Sbjct: 118 ALTGLALSGVAAVAMTYLSEEMHPSVLSFSIGLYISGNTIGGFLGRFLSSLFSEYFSWNI 177
Query: 363 DTPLNHFLAGTITSLFMLKPP 425
FLA T LF+ P
Sbjct: 178 ALEFISFLAFTSAVLFVYLLP 198
>sp|P21906|GLF_ZYMMO Glucose facilitated diffusion protein
Length = 473
Score = 30.4 bits (67), Expect = 4.9
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = +3
Query: 213 LNAFSILSVAENLTPSILVGSVTGYMLTGAMG---GALYTMTATSSSFVRGNKDTPLNHF 383
L+A + S++ + ++LVG VTG +L+G +G G + +S FV L
Sbjct: 48 LSATAAASLSGMVVVAVLVGCVTGSLLSGWIGIRFGRRGGLLMSSICFVAAGFGAALTEK 107
Query: 384 LAGTITSLFMLKPPYIYRKVVLSISIGIVCSI 479
L GT S + + + + + + IG+V ++
Sbjct: 108 LFGTGGSALQI---FCFFRFLAGLGIGVVSTL 136
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,192,277
Number of Sequences: 369166
Number of extensions: 1306700
Number of successful extensions: 3263
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3258
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6316483550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)