Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_L09
(893 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9R062|GLYG_MOUSE Glycogenin-1 305 1e-82
sp|O08730|GLYG_RAT Glycogenin-1 305 1e-82
sp|P46976|GLYG_HUMAN Glycogenin-1 304 2e-82
sp|P13280|GLYG_RABIT Glycogenin-1 301 2e-81
sp|O15488|GLYG2_HUMAN Glycogenin-2 (GN-2) (GN2) 284 3e-76
sp|P47011|GLG2_YEAST Glycogen synthesis initiator protein GLG2 124 4e-28
sp|P36143|GLG1_YEAST Glycogen synthesis initiator protein GLG1 84 7e-16
sp|Q9Y761|GNT1A_KLULA Glucose N-acetyltransferase 1-A (N-ac... 42 0.002
sp|Q6CT96|GNT1B_KLULA Glucose N-acetyltransferase 1-B (N-ac... 38 0.033
sp|Q09680|YA0C_SCHPO Hypothetical protein C5H10.12c in chro... 36 0.17
>sp|Q9R062|GLYG_MOUSE Glycogenin-1
Length = 333
Score = 305 bits (781), Expect = 1e-82
Identities = 148/247 (59%), Positives = 182/247 (73%), Gaps = 2/247 (0%)
Frame = +3
Query: 3 YALGALTLAMSLKHSGTQKELVIMITDNISEAMRNVLSQVFNHIEMVNVLDSNDVINLGL 182
YA GAL L SLK T + +V++ + +S++MR VL VF+ + MV+VLDS D +L L
Sbjct: 15 YAKGALVLGSSLKQHRTTRRMVVLTSPQVSDSMRKVLETVFDDVIMVDVLDSGDSAHLTL 74
Query: 183 LERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFEREELSAAPDPGWPDCFNS 362
++RPELGIT TKLHCW L QYSKCVFMDADTLV+ NIDDLFEREELSAAPDPGWPDCFNS
Sbjct: 75 MKRPELGITLTKLHCWSLTQYSKCVFMDADTLVLSNIDDLFEREELSAAPDPGWPDCFNS 134
Query: 363 GVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDIKHHLPFVYNCVSQAF 542
GVFVY+PSI+TY +LL A ++GSFDGGDQGLLN +FS W+T DI HLPFVYN S +
Sbjct: 135 GVFVYQPSIETYNQLLHLASEQGSFDGGDQGLLNTYFSGWATTDITKHLPFVYNLSSISI 194
Query: 543 YSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTV--IFQEGCGQNYESLQLWWTTFI 716
YSYLPA+ F + KV+HF+G KPW++T++ T +V Q+ + E L LWW TF
Sbjct: 195 YSYLPAFKAFGKNAKVVHFLGRTKPWNYTYNPQTKSVNCDSQDPTVSHPEFLNLWWDTFT 254
Query: 717 AYTKPLL 737
PLL
Sbjct: 255 TNVLPLL 261
>sp|O08730|GLYG_RAT Glycogenin-1
Length = 333
Score = 305 bits (780), Expect = 1e-82
Identities = 148/247 (59%), Positives = 181/247 (73%), Gaps = 2/247 (0%)
Frame = +3
Query: 3 YALGALTLAMSLKHSGTQKELVIMITDNISEAMRNVLSQVFNHIEMVNVLDSNDVINLGL 182
YA GAL L SLK T + V++ + +S++MR VL VF+ + MV+VLDS D +L L
Sbjct: 15 YAKGALVLGSSLKQHRTTRRTVVLASPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTL 74
Query: 183 LERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFEREELSAAPDPGWPDCFNS 362
++RPELGIT TKLHCW L QYSKCVFMDADTLV+ NIDDLFEREELSAAPDPGWPDCFNS
Sbjct: 75 MKRPELGITLTKLHCWSLTQYSKCVFMDADTLVLSNIDDLFEREELSAAPDPGWPDCFNS 134
Query: 363 GVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDIKHHLPFVYNCVSQAF 542
GVFVY+PSI+TY +LL A ++GSFDGGDQGLLN +FS W+T DI HLPFVYN S +
Sbjct: 135 GVFVYQPSIETYNQLLHLASEQGSFDGGDQGLLNTYFSGWATTDITKHLPFVYNLSSLSI 194
Query: 543 YSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTV--IFQEGCGQNYESLQLWWTTFI 716
YSYLPA+ F + KV+HF+G KPW++T++ T +V Q+ + E L LWW TF
Sbjct: 195 YSYLPAFKAFGKNAKVVHFLGRTKPWNYTYNPQTKSVKCESQDPIVSHPEFLNLWWDTFT 254
Query: 717 AYTKPLL 737
PLL
Sbjct: 255 TNVLPLL 261
>sp|P46976|GLYG_HUMAN Glycogenin-1
Length = 350
Score = 304 bits (779), Expect = 2e-82
Identities = 148/248 (59%), Positives = 182/248 (73%), Gaps = 3/248 (1%)
Frame = +3
Query: 3 YALGALTLAMSLKHSGTQKELVIMITDNISEAMRNVLSQVFNHIEMVNVLDSNDVINLGL 182
YA GAL L SLK T + LV++ T +S++MR VL VF+ + MV+VLDS D +L L
Sbjct: 15 YAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTL 74
Query: 183 LERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFEREELSAAPDPGWPDCFNS 362
++RPELG+T TKLHCW L QYSKCVFMDADTLV+ NIDDLF+REELSAAPDPGWPDCFNS
Sbjct: 75 MKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNS 134
Query: 363 GVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDIKHHLPFVYNCVSQAF 542
GVFVY+PS++TY +LL A ++GSFDGGDQG+LN FFS+W+T DI+ HLPF+YN S +
Sbjct: 135 GVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISI 194
Query: 543 YSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTVIFQEGCGQNY---ESLQLWWTTF 713
YSYLPA+ F A KV+HF+G KPW++T+D T +V E N E L LWW F
Sbjct: 195 YSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSV-KSEAHDPNMTHPEFLILWWNIF 253
Query: 714 IAYTKPLL 737
PLL
Sbjct: 254 TTNVLPLL 261
>sp|P13280|GLYG_RABIT Glycogenin-1
Length = 333
Score = 301 bits (771), Expect = 2e-81
Identities = 147/271 (54%), Positives = 188/271 (69%), Gaps = 4/271 (1%)
Frame = +3
Query: 3 YALGALTLAMSLKHSGTQKELVIMITDNISEAMRNVLSQVFNHIEMVNVLDSNDVINLGL 182
YA GAL L SLK T + L ++ T +S+ MR L VF+ + V++LDS D +L L
Sbjct: 15 YAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTL 74
Query: 183 LERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFEREELSAAPDPGWPDCFNS 362
++RPELG+T TKLHCW L QYSKCVFMDADTLV+ NIDDLFEREELSAAPDPGWPDCFNS
Sbjct: 75 MKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNS 134
Query: 363 GVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDIKHHLPFVYNCVSQAF 542
GVFVY+PS++TY +LL A ++GSFDGGDQGLLN FF++W+T DI+ HLPF+YN S +
Sbjct: 135 GVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISI 194
Query: 543 YSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTVIFQ--EGCGQNYESLQLWWTTFI 716
YSYLPA+ F A+ KV+HF+G KPW++T+D+ T +V + + + + L +WW F
Sbjct: 195 YSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 254
Query: 717 AYTKPLLHD--EMGGVCGRMASLDVSSFVPH 803
PLL + C DVS V H
Sbjct: 255 TSVVPLLQQFGLVQDTCSYQHVEDVSGAVSH 285
>sp|O15488|GLYG2_HUMAN Glycogenin-2 (GN-2) (GN2)
Length = 501
Score = 284 bits (726), Expect = 3e-76
Identities = 136/278 (48%), Positives = 180/278 (64%), Gaps = 20/278 (7%)
Frame = +3
Query: 3 YALGALTLAMSLKHSGTQKELVIMITDNISEAMRNVLSQVFNHIEMVNVLDSNDVINLGL 182
Y GAL L SL+ ++LV++IT +S +R +LS+VF+ + VN++DS D I+L
Sbjct: 48 YCQGALVLGQSLRRHRLTRKLVVLITPQVSSLLRVILSKVFDEVIEVNLIDSADYIHLAF 107
Query: 183 LERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFEREELSAAPDPGWPDCFNS 362
L+RPELG+T TKLHCW L YSKCVF+DADTLV+ N+D+LF+R E SAAPDPGWPDCFNS
Sbjct: 108 LKRPELGLTLTKLHCWTLTHYSKCVFLDADTLVLSNVDELFDRGEFSAAPDPGWPDCFNS 167
Query: 363 GVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDIKHHLPFVYNCVSQAF 542
GVFV++PS+ T+ LLQ A++ GSFDG DQGLLN FF NWST DI HLPF+YN S
Sbjct: 168 GVFVFQPSLHTHKLLLQHAMEHGSFDGADQGLLNSFFRNWSTTDIHKHLPFIYNLSSNTM 227
Query: 543 YSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTVIFQEGCGQNYES---LQLWWTTF 713
Y+Y PA+ F + KV+HF+G KPW++ ++ +G+V+ Q + L LWWT +
Sbjct: 228 YTYSPAFKQFGSSAKVVHFLGSMKPWNYKYNPQSGSVLEQGSVSSSQHQAAFLHLWWTVY 287
Query: 714 IAYTKP-----------------LLHDEMGGVCGRMAS 776
P L H ++GG C AS
Sbjct: 288 QNNVLPLYKSVQAGEARASPGHTLCHSDVGGPCADSAS 325
>sp|P47011|GLG2_YEAST Glycogen synthesis initiator protein GLG2
Length = 380
Score = 124 bits (311), Expect = 4e-28
Identities = 87/253 (34%), Positives = 122/253 (48%), Gaps = 40/253 (15%)
Frame = +3
Query: 3 YALGALTLAMSL----KHSGTQKELVIMIT-------DNISEAMRNVLSQVFNHIEMVNV 149
Y GALTLA L KH+ + E+ + + D ++ +F I ++
Sbjct: 16 YLPGALTLAYQLQKLLKHAVVEDEITLCLLIEKKLFGDEFKPQEIALIRSLFKEIIIIEP 75
Query: 150 LDSNDV------INLGLLERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFE- 308
L + NL LL+RPEL T K W LVQ+ + +F+DADTL + + FE
Sbjct: 76 LKDQEKSIEKNKANLELLKRPELSHTLLKARLWELVQFDQVLFLDADTLPLNK--EFFEI 133
Query: 309 --------REELSAAPDPGWPDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLN 464
R +++A PD GWPD FN+GV + P +D L F I S DG DQG+ N
Sbjct: 134 LRLYPEQTRFQIAAVPDIGWPDMFNTGVLLLIPDLDMATSLQDFLIKTVSIDGADQGIFN 193
Query: 465 MFFS---NWSTKDIKH---------HLPFVYNCVSQAF-YSYLPAYTHFRADIKVLHFIG 605
FF+ N+S K++ H LPF YN + Y PA F+ I+++HFIG
Sbjct: 194 QFFNPICNYS-KEVLHKVSPLMEWIRLPFTYNVTMPNYGYQSSPAMNFFQQHIRLIHFIG 252
Query: 606 PHKPW-HHTFDSD 641
KPW +T D D
Sbjct: 253 TFKPWSRNTTDYD 265
>sp|P36143|GLG1_YEAST Glycogen synthesis initiator protein GLG1
Length = 480
Score = 83.6 bits (205), Expect = 7e-16
Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Frame = +3
Query: 315 ELSAAPDPGWPDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFS-NWSTK 491
++ A D GWPD FNSGV + P DT L + + S DG DQG+LN FF+ N T
Sbjct: 8 QVGAIADIGWPDMFNSGVMMLIPDADTASVLQNYIFENTSIDGSDQGILNQFFNQNCCTD 67
Query: 492 DIKH--------HLPFVYN-CVSQAFYSYLPAYTHFRADIKVLHFIGPHKPW 620
++ L F YN + Y PA +F+ IK++HFIG HKPW
Sbjct: 68 ELVKDSFSREWVQLSFTYNVTIPNLGYQSSPAMNYFKPSIKLIHFIGKHKPW 119
>sp|Q9Y761|GNT1A_KLULA Glucose N-acetyltransferase 1-A (N-acetylglucosaminyltransferase A)
Length = 460
Score = 42.0 bits (97), Expect = 0.002
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Frame = +3
Query: 36 LKHSGTQKELVIMITDNISEAMRNVLSQVFNHIEMVNVLDSNDVI----NLGLLERPELG 203
L SGTQ +LV+++ ++E + V + + N ++ N+ L +
Sbjct: 118 LHESGTQAKLVMLVAKELTELPED--DSVTRMLAQFKEISDNCIVKPVENIVLSQGSAQW 175
Query: 204 IT-FTKLHCWRLVQYSKCVFMDADTLVIQNIDDLF 305
+T TKL + +V+Y + V+ D+D+++ +N+D+LF
Sbjct: 176 MTSMTKLRVFGMVEYKRIVYFDSDSIITRNMDELF 210
>sp|Q6CT96|GNT1B_KLULA Glucose N-acetyltransferase 1-B (N-acetylglucosaminyltransferase B)
Length = 453
Score = 38.1 bits (87), Expect = 0.033
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Frame = +3
Query: 3 YALGALTLAMSLKHSGTQKELVIMITDNIS---------EAMRNVLSQVFNHI---EMVN 146
Y L L SG++ +L+ ++TD + EA+ N + V + + E+ +
Sbjct: 96 YLCNTLIQFRKLNDSGSKAKLLALVTDTLVNKSKENKEVEALLNKIKSVSDRVAVTEVGS 155
Query: 147 VLDSNDVINLGLLERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLF 305
V+ ND + TKL + L Y + ++MD D ++ +D+LF
Sbjct: 156 VIQPND--------HTPWSKSLTKLAIFNLTDYERIIYMDNDAIIHDKMDELF 200
>sp|Q09680|YA0C_SCHPO Hypothetical protein C5H10.12c in chromosome I
Length = 371
Score = 35.8 bits (81), Expect = 0.17
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = +3
Query: 210 FTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFE 308
F+KL + +Q+ K +D+D L+++NIDD+F+
Sbjct: 161 FSKLRIFEQIQFDKICVIDSDILIMKNIDDIFD 193
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,978,524
Number of Sequences: 369166
Number of extensions: 2334184
Number of successful extensions: 5556
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5548
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8982382310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)