Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_L03
(786 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O44081|DKC1_DROME H/ACA ribonucleoprotein complex subuni... 358 9e-99
sp|O43101|CBF5_CANAL Centromere/microtubule-binding protein... 358 1e-98
sp|Q9LD90|DKC1_ARATH H/ACA ribonucleoprotein complex subuni... 356 3e-98
sp|P40615|DKC1_RAT H/ACA ribonucleoprotein complex subunit ... 352 7e-97
sp|O60832|DKC1_HUMAN H/ACA ribonucleoprotein complex subuni... 351 1e-96
sp|Q5ZJH9|DKC1_CHICK H/ACA ribonucleoprotein complex subuni... 349 6e-96
sp|O13473|CBF5_KLULA Centromere/microtubule-binding protein... 348 7e-96
sp|P33322|CBF5_YEAST H/ACA ribonucleoprotein complex subuni... 348 1e-95
sp|Q9ESX5|DKC1_MOUSE H/ACA ribonucleoprotein complex subuni... 347 2e-95
sp|O14007|CBF5_SCHPO H/ACA ribonucleoprotein complex subuni... 342 5e-94
>sp|O44081|DKC1_DROME H/ACA ribonucleoprotein complex subunit 4 (Nucleolar protein AT
band 60B) (Minifly protein)
Length = 508
Score = 358 bits (919), Expect = 9e-99
Identities = 172/262 (65%), Positives = 207/262 (79%)
Frame = +1
Query: 1 KSKKLAVEPTDHAPPVDGSDWPLLLKNFQKMNVRECHFTPSEKGFSPLQRPIDEYLKSGV 180
K ++P+ +D S WPLLLKNF K+N+R H+TP G SPL R I EY+K+G
Sbjct: 30 KQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGF 89
Query: 181 INLDKPSNPSSHEVVAWVKRALGVEKTGHSGTLDPKVTGCLIVCLDRATRLVKSQQNAGK 360
INLDKPSNPSSHEVVAW+K+ L VEKTGHSGTLDPKVTGCLIVC+DRATRLVKSQQ+AGK
Sbjct: 90 INLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGK 149
Query: 361 EYVAVFRIPEPVQDVKLVYKALERIKGALLQLPPIICAVKRTLRIRTVYDLKLIEYDEKR 540
EYVA+F++ V+ V V + LE+++GAL Q PP+I AVKR LR+RTVYD KL++YDE R
Sbjct: 150 EYVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKLLDYDETR 209
Query: 541 GLGVLWVKCEAGTYIRTLCVHLGFLLGVSTYMDELRRVRSGILTENDNMVTLHDVLDAMY 720
+GV WV CEAG+YIRT+CVHLG +LGV M ELRRVRSGI +E D MVT+HDVLDAM+
Sbjct: 210 NMGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTMHDVLDAMW 269
Query: 721 MYKKHNDESYLRRVVMPLEILL 786
+Y+ H DES LRRV+ PLE LL
Sbjct: 270 LYENHKDESMLRRVIKPLEGLL 291
>sp|O43101|CBF5_CANAL Centromere/microtubule-binding protein CBF5 (Centromere-binding
factor 5) (Small nucleolar RNP protein CBF5) (H/ACA
snoRNP protein CBF5)
Length = 479
Score = 358 bits (918), Expect = 1e-98
Identities = 173/256 (67%), Positives = 203/256 (79%)
Frame = +1
Query: 19 VEPTDHAPPVDGSDWPLLLKNFQKMNVRECHFTPSEKGFSPLQRPIDEYLKSGVINLDKP 198
++P +P D S WPLLLKN+ K+ VR H+TP G +PL R I Y+ SGVINLDKP
Sbjct: 9 IKPESVSPSNDTSQWPLLLKNYDKLLVRSGHYTPIPAGSAPLNRDIKSYVSSGVINLDKP 68
Query: 199 SNPSSHEVVAWVKRALGVEKTGHSGTLDPKVTGCLIVCLDRATRLVKSQQNAGKEYVAVF 378
SNPSSHEVVAW+KR L VEKTGHSGTLDPKVTGCLIVC+DRATRLVKSQQ AGKEYV +
Sbjct: 69 SNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIV 128
Query: 379 RIPEPVQDVKLVYKALERIKGALLQLPPIICAVKRTLRIRTVYDLKLIEYDEKRGLGVLW 558
R+ E ++D K + +ALE + GAL Q PP+I AVKR LR+RTVYD KLIE+D KRGLGV W
Sbjct: 129 RLHEQLKDDKELNRALENLTGALFQRPPLISAVKRQLRVRTVYDSKLIEFDNKRGLGVFW 188
Query: 559 VKCEAGTYIRTLCVHLGFLLGVSTYMDELRRVRSGILTENDNMVTLHDVLDAMYMYKKHN 738
CEAGTY+RTLCVHLG LLGV +M ELRRVRSG ++E+DN+VTLHDVLDA Y+Y
Sbjct: 189 ASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGAMSESDNLVTLHDVLDAQYVYDNTR 248
Query: 739 DESYLRRVVMPLEILL 786
DESYLR+++ PLE LL
Sbjct: 249 DESYLRKIIQPLESLL 264
>sp|Q9LD90|DKC1_ARATH H/ACA ribonucleoprotein complex subunit 4 (Nucleolar protein NAP57
homolog) (Nopp-140 associated protein of 57 kDa homolog)
(AtNAP57)
Length = 565
Score = 356 bits (914), Expect = 3e-98
Identities = 171/256 (66%), Positives = 204/256 (79%)
Frame = +1
Query: 19 VEPTDHAPPVDGSDWPLLLKNFQKMNVRECHFTPSEKGFSPLQRPIDEYLKSGVINLDKP 198
++P P +D S WP+LLKN+ ++NVR H+TP G SPL+RP+ EY++ GVINLDKP
Sbjct: 29 IKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKP 88
Query: 199 SNPSSHEVVAWVKRALGVEKTGHSGTLDPKVTGCLIVCLDRATRLVKSQQNAGKEYVAVF 378
+NPSSHEVVAW+KR L VEKTGHSGTLDPKVTG LIVC+DRATRLVKSQQ AGKEYV V
Sbjct: 89 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 148
Query: 379 RIPEPVQDVKLVYKALERIKGALLQLPPIICAVKRTLRIRTVYDLKLIEYDEKRGLGVLW 558
R+ V DV V +ALE + GA+ Q PP+I AVKR LRIRT+Y+ KL+EYD R L V W
Sbjct: 149 RLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFW 208
Query: 559 VKCEAGTYIRTLCVHLGFLLGVSTYMDELRRVRSGILTENDNMVTLHDVLDAMYMYKKHN 738
V CEAGTYIRT+CVHLG LLGV +M ELRRVRSGIL EN+NMVT+HDV+DA ++Y
Sbjct: 209 VSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSR 268
Query: 739 DESYLRRVVMPLEILL 786
DESYLRRV+MPLE++L
Sbjct: 269 DESYLRRVIMPLEMIL 284
>sp|P40615|DKC1_RAT H/ACA ribonucleoprotein complex subunit 4 (Dyskerin) (Nucleolar
protein family A member 4) (snoRNP protein DKC1)
(Nopp140-associated protein of 57 kDa) (Nucleolar
protein NAP57)
Length = 509
Score = 352 bits (903), Expect = 7e-97
Identities = 168/256 (65%), Positives = 203/256 (79%)
Frame = +1
Query: 19 VEPTDHAPPVDGSDWPLLLKNFQKMNVRECHFTPSEKGFSPLQRPIDEYLKSGVINLDKP 198
++P A +D S WPLLLKNF ++NVR H+TP G +PL+R I EY+++G INLDKP
Sbjct: 39 IKPESKAAQLDTSQWPLLLKNFDRLNVRTTHYTPIPCGSNPLKREIGEYVRTGFINLDKP 98
Query: 199 SNPSSHEVVAWVKRALGVEKTGHSGTLDPKVTGCLIVCLDRATRLVKSQQNAGKEYVAVF 378
SNPSSHEVVAW++R L VEKTGHSGTLDPKVTGCLIVC++RATRLVKSQQ+AGKEYV V
Sbjct: 99 SNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGVV 158
Query: 379 RIPEPVQDVKLVYKALERIKGALLQLPPIICAVKRTLRIRTVYDLKLIEYDEKRGLGVLW 558
R+ ++ + +ALE + GAL Q PP+I AVKR LR+RT+Y+ +++EYD +R LGV W
Sbjct: 159 RLHNAIEGTAQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESRVVEYDPERRLGVFW 218
Query: 559 VKCEAGTYIRTLCVHLGFLLGVSTYMDELRRVRSGILTENDNMVTLHDVLDAMYMYKKHN 738
V CEAGTYIRTLCVHLG LLGV M ELRRVRSG++ E D+MVT+HDVLDA Y+Y H
Sbjct: 219 VSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVVGERDHMVTMHDVLDAQYLYDHHR 278
Query: 739 DESYLRRVVMPLEILL 786
DESYLRRVV PLE LL
Sbjct: 279 DESYLRRVVFPLEKLL 294
>sp|O60832|DKC1_HUMAN H/ACA ribonucleoprotein complex subunit 4 (Dyskerin) (Nucleolar
protein family A member 4) (snoRNP protein DKC1)
(Nopp140-associated protein of 57 kDa) (Nucleolar
protein NAP57) (CBF5 homolog)
Length = 514
Score = 351 bits (901), Expect = 1e-96
Identities = 166/261 (63%), Positives = 206/261 (78%)
Frame = +1
Query: 4 SKKLAVEPTDHAPPVDGSDWPLLLKNFQKMNVRECHFTPSEKGFSPLQRPIDEYLKSGVI 183
+++ ++P +D S WPLLLKNF K+NVR H+TP G +PL+R I +Y+++G I
Sbjct: 33 AEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFI 92
Query: 184 NLDKPSNPSSHEVVAWVKRALGVEKTGHSGTLDPKVTGCLIVCLDRATRLVKSQQNAGKE 363
NLDKPSNPSSHEVVAW++R L VEKTGHSGTLDPKVTGCLIVC++RATRLVKSQQ+AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 364 YVAVFRIPEPVQDVKLVYKALERIKGALLQLPPIICAVKRTLRIRTVYDLKLIEYDEKRG 543
YV + R+ ++ + +ALE + GAL Q PP+I AVKR LR+RT+Y+ K+IEYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 544 LGVLWVKCEAGTYIRTLCVHLGFLLGVSTYMDELRRVRSGILTENDNMVTLHDVLDAMYM 723
LG+ WV CEAGTYIRTLCVHLG LLGV M ELRRVRSG+++E D+MVT+HDVLDA ++
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 724 YKKHNDESYLRRVVMPLEILL 786
Y H DESYLRRVV PLE LL
Sbjct: 273 YDNHKDESYLRRVVYPLEKLL 293
>sp|Q5ZJH9|DKC1_CHICK H/ACA ribonucleoprotein complex subunit 4 (Dyskerin)
Length = 516
Score = 349 bits (895), Expect = 6e-96
Identities = 165/261 (63%), Positives = 204/261 (78%)
Frame = +1
Query: 4 SKKLAVEPTDHAPPVDGSDWPLLLKNFQKMNVRECHFTPSEKGFSPLQRPIDEYLKSGVI 183
+++ ++P +D S WPLLLKNF K+NV H+TP G +PL+R I +Y++SG I
Sbjct: 31 TEEFLIKPESRVAQLDTSQWPLLLKNFDKLNVLTTHYTPLPSGANPLKREISDYVRSGFI 90
Query: 184 NLDKPSNPSSHEVVAWVKRALGVEKTGHSGTLDPKVTGCLIVCLDRATRLVKSQQNAGKE 363
NLDKPSNPSSHEVVAW++R L VEKTGHSGTLDPKVTGCLIVC++RATRLVKSQQ+AGKE
Sbjct: 91 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 150
Query: 364 YVAVFRIPEPVQDVKLVYKALERIKGALLQLPPIICAVKRTLRIRTVYDLKLIEYDEKRG 543
YV + R+ ++ + +A+E + GAL Q PP+I AVKR LR+RT+Y+ KL+EYD +R
Sbjct: 151 YVGIVRLHNAIESEAQLARAIETLTGALFQRPPLIAAVKRQLRVRTIYESKLVEYDPERR 210
Query: 544 LGVLWVKCEAGTYIRTLCVHLGFLLGVSTYMDELRRVRSGILTENDNMVTLHDVLDAMYM 723
LG+ WV CEAGTYIRTLCVHLG LLGV M ELRRVRSGIL E DNMVT+HDVLDA +
Sbjct: 211 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGILGEMDNMVTMHDVLDAQWQ 270
Query: 724 YKKHNDESYLRRVVMPLEILL 786
Y + D+SYLRRV++PLE LL
Sbjct: 271 YDNNKDDSYLRRVILPLEKLL 291
>sp|O13473|CBF5_KLULA Centromere/microtubule-binding protein CBF5 (Centromere-binding
factor 5) (Small nucleolar RNP protein CBF5) (H/ACA
snoRNP protein CBF5)
Length = 474
Score = 348 bits (894), Expect = 7e-96
Identities = 166/261 (63%), Positives = 203/261 (77%)
Frame = +1
Query: 4 SKKLAVEPTDHAPPVDGSDWPLLLKNFQKMNVRECHFTPSEKGFSPLQRPIDEYLKSGVI 183
S + ++P +P + S+WPLLLK++ K+ VR H+TP G SPL+R + Y+ SGVI
Sbjct: 2 SDEFVIKPESVSPSSNTSEWPLLLKDYDKLLVRSGHYTPIPAGASPLKRDLKSYISSGVI 61
Query: 184 NLDKPSNPSSHEVVAWVKRALGVEKTGHSGTLDPKVTGCLIVCLDRATRLVKSQQNAGKE 363
NLDKPSNPSSHEVVAW+KR L EKTGHSGTLDPKVTGCLIVC+DRATRLVKSQQ AGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKE 121
Query: 364 YVAVFRIPEPVQDVKLVYKALERIKGALLQLPPIICAVKRTLRIRTVYDLKLIEYDEKRG 543
YV + R+ + ++D K + + LE + GAL Q PP+I AVKR LR+RT+YD LIE+D KR
Sbjct: 122 YVCIVRLHDALKDEKELGRGLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRN 181
Query: 544 LGVLWVKCEAGTYIRTLCVHLGFLLGVSTYMDELRRVRSGILTENDNMVTLHDVLDAMYM 723
LGV W CEAGTY+RTLCVHLG LLGV +M ELRRVRSG L+ENDN+VTLHDV+DA ++
Sbjct: 182 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNLVTLHDVMDAQWV 241
Query: 724 YKKHNDESYLRRVVMPLEILL 786
Y DESYLR+++ PLE LL
Sbjct: 242 YDNTRDESYLRKIIQPLETLL 262
>sp|P33322|CBF5_YEAST H/ACA ribonucleoprotein complex subunit 4
(Centromere/microtubule-binding protein CBF5)
(Centromere-binding factor 5) (Small nucleolar RNP
protein CBF5) (H/ACA snoRNP protein CBF5) (p64')
Length = 483
Score = 348 bits (892), Expect = 1e-95
Identities = 167/256 (65%), Positives = 199/256 (77%)
Frame = +1
Query: 19 VEPTDHAPPVDGSDWPLLLKNFQKMNVRECHFTPSEKGFSPLQRPIDEYLKSGVINLDKP 198
++P D S+WPLLLKNF K+ VR H+TP G SPL+R + Y+ SGVINLDKP
Sbjct: 8 IKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKP 67
Query: 199 SNPSSHEVVAWVKRALGVEKTGHSGTLDPKVTGCLIVCLDRATRLVKSQQNAGKEYVAVF 378
SNPSSHEVVAW+KR L EKTGHSGTLDPKVTGCLIVC+DRATRLVKSQQ AGKEYV +
Sbjct: 68 SNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIV 127
Query: 379 RIPEPVQDVKLVYKALERIKGALLQLPPIICAVKRTLRIRTVYDLKLIEYDEKRGLGVLW 558
R+ + ++D K + ++LE + GAL Q PP+I AVKR LR+RT+Y+ LIE+D KR LGV W
Sbjct: 128 RLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNLGVFW 187
Query: 559 VKCEAGTYIRTLCVHLGFLLGVSTYMDELRRVRSGILTENDNMVTLHDVLDAMYMYKKHN 738
CEAGTY+RTLCVHLG LLGV +M ELRRVRSG L+ENDNMVTLHDV+DA ++Y
Sbjct: 188 ASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVYDNTR 247
Query: 739 DESYLRRVVMPLEILL 786
DESYLR ++ PLE LL
Sbjct: 248 DESYLRSIIQPLETLL 263
>sp|Q9ESX5|DKC1_MOUSE H/ACA ribonucleoprotein complex subunit 4 (Dyskerin) (Nucleolar
protein family A member 4) (snoRNP protein DKC1)
(Nopp140-associated protein of 57 kDa) (Nucleolar
protein NAP57)
Length = 509
Score = 347 bits (891), Expect = 2e-95
Identities = 164/261 (62%), Positives = 205/261 (78%)
Frame = +1
Query: 4 SKKLAVEPTDHAPPVDGSDWPLLLKNFQKMNVRECHFTPSEKGFSPLQRPIDEYLKSGVI 183
+++ ++P +D S WPLLLKNF K+NVR H+TP G +PL+R I +Y+++G I
Sbjct: 33 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFI 92
Query: 184 NLDKPSNPSSHEVVAWVKRALGVEKTGHSGTLDPKVTGCLIVCLDRATRLVKSQQNAGKE 363
NLDKPSNPSSHEVVAW++R L VEKTGHSGTLDPKVTGCLIVC++RATRLVKSQQ+AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 364 YVAVFRIPEPVQDVKLVYKALERIKGALLQLPPIICAVKRTLRIRTVYDLKLIEYDEKRG 543
YV + R+ ++ + +ALE + GAL Q PP+I AVKR LR+RT+Y+ K+IEYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 544 LGVLWVKCEAGTYIRTLCVHLGFLLGVSTYMDELRRVRSGILTENDNMVTLHDVLDAMYM 723
LG+ WV CEAGTYIRTLCVHL F+LG M ELRRVRSG+++E D+MVT+HDVLDA ++
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLCFVLGSGCQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 724 YKKHNDESYLRRVVMPLEILL 786
Y H DESYLRRVV PLE LL
Sbjct: 273 YDNHKDESYLRRVVYPLEKLL 293
>sp|O14007|CBF5_SCHPO H/ACA ribonucleoprotein complex subunit 4 (Centromere-binding
factor 5 homolog)
Length = 474
Score = 342 bits (878), Expect = 5e-94
Identities = 167/250 (66%), Positives = 200/250 (80%)
Frame = +1
Query: 37 APPVDGSDWPLLLKNFQKMNVRECHFTPSEKGFSPLQRPIDEYLKSGVINLDKPSNPSSH 216
A +D ++WPLLLKNF K+ VR H+TP G +PL+RPI EY+ SGVINLDKP+NPSSH
Sbjct: 19 ASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVINLDKPANPSSH 78
Query: 217 EVVAWVKRALGVEKTGHSGTLDPKVTGCLIVCLDRATRLVKSQQNAGKEYVAVFRIPEPV 396
EVVAWVK+ L VEKTGHSGTLDPKVTGCLI+C DRATRLVKSQQ+AGKEYV V R+ + V
Sbjct: 79 EVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEYVCVLRLHDSV 138
Query: 397 QDVKLVYKALERIKGALLQLPPIICAVKRTLRIRTVYDLKLIEYDEKRGLGVLWVKCEAG 576
+ + V A+E + GAL Q PP+I AVKR LRIR++Y+ KLIE+D +R L V W CEAG
Sbjct: 139 EGERNVASAIETLTGALFQRPPLISAVKRQLRIRSIYESKLIEFDNERNLAVFWASCEAG 198
Query: 577 TYIRTLCVHLGFLLGVSTYMDELRRVRSGILTENDNMVTLHDVLDAMYMYKKHNDESYLR 756
TY+RTLCVHLG LLGV +M ELRRVRSG L+END++VT+HDVLDA ++Y DESYLR
Sbjct: 199 TYMRTLCVHLGLLLGVGGHMQELRRVRSGCLSENDDIVTMHDVLDAQWIYDNTRDESYLR 258
Query: 757 RVVMPLEILL 786
RV+ PLE LL
Sbjct: 259 RVIRPLESLL 268
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,022,296
Number of Sequences: 369166
Number of extensions: 2059609
Number of successful extensions: 4814
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4579
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)