Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_K21
(748 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-r... 106 8e-23
sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-r... 100 3e-21
sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3) 84 4e-16
sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen relat... 82 2e-15
sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precur... 82 2e-15
sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precur... 82 2e-15
sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related pro... 81 3e-15
sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precur... 81 3e-15
sp|Q8JI38|CRVP_LATSE Latisemin precursor 80 4e-15
sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type ... 80 6e-15
>sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 106 bits (264), Expect = 8e-23
Identities = 60/145 (41%), Positives = 84/145 (57%), Gaps = 4/145 (2%)
Frame = +3
Query: 6 LKHHNKLPERHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHS--KSEGKYGENLASSFNS 179
LK HN+ ++H VP L L +L + AQ+Y++ LA T HS S G+ GENLA +
Sbjct: 14 LKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWA--- 70
Query: 180 KPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGRAKCSNGNF 359
Y TG WY EIK+Y F + +G GHF+ +VWK+TK G G+A S+G+
Sbjct: 71 --SYDQTGKEVADRWYSEIKNYNFQQPGFTSGT-GHFTAMVWKNTKKMGVGKASASDGSS 127
Query: 360 IIVGQYKPPGNFL--GKFKENILSP 428
+V +Y P GN + G F+EN+L P
Sbjct: 128 FVVARYFPAGNVVNEGFFEENVLPP 152
>sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 100 bits (250), Expect = 3e-21
Identities = 59/145 (40%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Frame = +3
Query: 6 LKHHNKLPERHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHS--KSEGKYGENLASSFNS 179
LK HN+ +H VP L L L + AQ+Y++ LA T HS S G+ GENLA +
Sbjct: 14 LKAHNEYRAQHGVPPLKLCKKLNREAQQYSEALASTRILKHSPESSRGQCGENLAWA--- 70
Query: 180 KPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGRAKCSNGNF 359
Y TG WY EIK Y F + +G GHF+ +VWK+TK G G+A S+G+
Sbjct: 71 --SYDQTGKDVADRWYSEIKSYNFQQPGFTSGT-GHFTAMVWKNTKKIGVGKASASDGSS 127
Query: 360 IIVGQYKPPGNFL--GKFKENILSP 428
+V +Y P GN + G F+EN+ P
Sbjct: 128 FVVARYFPAGNIVNQGFFEENVPPP 152
>sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3)
Length = 881
Score = 84.0 bits (206), Expect = 4e-16
Identities = 58/141 (41%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Frame = +3
Query: 6 LKHHNKLPERHRVPNLTLDWD--LAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNS 179
L HNK H V L W LA AQ YAD+ + +HS +G YGENLA
Sbjct: 30 LNEHNKFRALH-VDTAPLTWSDTLATYAQNYADQYDCSGVLTHS--DGPYGENLAL---- 82
Query: 180 KPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGRAKC-SNGN 356
GY TG A WY EI Y ++ GHF+QVVWK T G G C + N
Sbjct: 83 --GYTDTG--AVDAWYGEISKYNYSNPGFSEST-GHFTQVVWKSTAEIGCGYKYCGTTWN 137
Query: 357 FIIVGQYKPPGNFLGKFKENI 419
IV Y PPGN+LG+F E +
Sbjct: 138 NYIVCSYNPPGNYLGEFAEEV 158
>sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen related in Sc 1)
Length = 299
Score = 82.0 bits (201), Expect = 2e-15
Identities = 52/141 (36%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Frame = +3
Query: 6 LKHHNKLPERHR-VPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSK 182
L HNK H+ P L+ LA AQ+YAD + + +HS G YGENLA ++
Sbjct: 167 LAEHNKKRALHKDTPALSWSDTLASYAQDYADNYDCSGTLTHSG--GPYGENLALGYD-- 222
Query: 183 PGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGRAKCSN--GN 356
G AA WY+EI +Y F+ + GHF+QVVWK T G G C G+
Sbjct: 223 ------GPAAVDAWYNEISNYDFSNPGFSSNT-GHFTQVVWKSTTQVGCGIKTCGGAWGD 275
Query: 357 FIIVGQYKPPGNFLGKFKENI 419
++I Y P GN+ G++ +N+
Sbjct: 276 YVIC-SYDPAGNYEGEYADNV 295
>sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precursor (PR-1A)
Length = 168
Score = 82.0 bits (201), Expect = 2e-15
Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Frame = +3
Query: 6 LKHHNKLPERHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKP 185
L HN V LT D +A AQ YA +LA + HS G+YGENLA
Sbjct: 38 LDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENLAEG----S 91
Query: 186 GYIFTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFI 362
G T A + W DE + Y + G++ GH++QVVW+++ G R +C+NG ++
Sbjct: 92 GDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYV 151
Query: 363 IVGQYKPPGNFLGK 404
+ Y PPGN+ G+
Sbjct: 152 VSCNYDPPGNYRGE 165
>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precursor (PR-1B)
Length = 168
Score = 81.6 bits (200), Expect = 2e-15
Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Frame = +3
Query: 6 LKHHNKLPERHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKP 185
L HN V LT D +A AQ Y +LA + HS G+YGENLA
Sbjct: 38 LDAHNTARADVGVEPLTWDNGVAAYAQNYVSQLAADCNLVHS--HGQYGENLAQG----S 91
Query: 186 GYIFTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFI 362
G T A + W DE + Y + G++ GH++QVVW+++ G R KC+NG ++
Sbjct: 92 GDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVKCNNGGYV 151
Query: 363 IVGQYKPPGNFLGK 404
+ Y PPGN +G+
Sbjct: 152 VSCNYDPPGNVIGQ 165
>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 precursor (PRP 1)
Length = 177
Score = 81.3 bits (199), Expect = 3e-15
Identities = 48/133 (36%), Positives = 67/133 (50%)
Frame = +3
Query: 6 LKHHNKLPERHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKP 185
L HN + V +T D LA AQ YA++ HS G YGENLA++F
Sbjct: 31 LNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRIGDCGMIHS--HGPYGENLAAAFPQ-- 86
Query: 186 GYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGRAKCSNGNFII 365
A + W DE + Y +N + G GH++QVVW+++ G R + +NG F I
Sbjct: 87 ---LNAAGAVKMWVDEKRFYDYNSNSCVGGVCGHYTQVVWRNSVRLGCARVRSNNGWFFI 143
Query: 366 VGQYKPPGNFLGK 404
Y PPGNF+G+
Sbjct: 144 TCNYDPPGNFIGQ 156
>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precursor (PR-1C)
Length = 168
Score = 80.9 bits (198), Expect = 3e-15
Identities = 49/134 (36%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Frame = +3
Query: 6 LKHHNKLPERHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKP 185
L HN V LT D +A AQ YA +LA + HS G+YGENLA
Sbjct: 38 LDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENLAWG----S 91
Query: 186 GYIFTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFI 362
G T A + W +E + Y + G++ GH++QVVW+++ G R +C+NG +I
Sbjct: 92 GDFLTAAKAVEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYI 151
Query: 363 IVGQYKPPGNFLGK 404
+ Y PPGN +GK
Sbjct: 152 VSCNYDPPGNVIGK 165
>sp|Q8JI38|CRVP_LATSE Latisemin precursor
Length = 238
Score = 80.5 bits (197), Expect = 4e-15
Identities = 46/122 (37%), Positives = 73/122 (59%), Gaps = 5/122 (4%)
Frame = +3
Query: 51 LTLDW--DLAKSAQEYADKLAKTNSFSHSKSEGKY--GENLASSFNSKPGYIFTGDAATQ 218
L ++W D A++AQ +AD+ + +S SH ++ GK+ GENL S S+P + Q
Sbjct: 56 LQMEWNSDAAQNAQRWADRCSFAHSPSHLRTVGKFSCGENLFMS--SQP---YAWSRVIQ 110
Query: 219 NWYDEIKDYKFNEEAQQTGK-IGHFSQVVWKDTKLCGFGRAKCSNGNFIIVGQYKPPGNF 395
+WYDE K++ ++ A G IGH++Q+VW + L G A+CS+ ++ V QY P GN
Sbjct: 111 SWYDENKNFIYDVGANPPGSVIGHYTQIVWYKSHLLGCAAARCSSSKYLYVCQYCPAGNI 170
Query: 396 LG 401
+G
Sbjct: 171 IG 172
>sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type precursor
Length = 167
Score = 80.1 bits (196), Expect = 6e-15
Identities = 49/131 (37%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Frame = +3
Query: 15 HNKLPERHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYI 194
HN V +T D +A A++YA A HS + +YGENLA F S G+
Sbjct: 39 HNAARSAVNVGPVTWDESVAAFARQYAQSRAGDCRLVHS-GDPRYGENLA--FGS--GFE 93
Query: 195 FTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFIIVG 371
TG A W E DY N GK+ GH++QVVW+++ G R +C+NG + I
Sbjct: 94 LTGRNAVDMWVAERNDYNPNTNTCAPGKVCGHYTQVVWRNSVRIGCARVRCNNGAWFITC 153
Query: 372 QYKPPGNFLGK 404
Y PPGN+ G+
Sbjct: 154 NYSPPGNYAGQ 164
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,890,400
Number of Sequences: 369166
Number of extensions: 1602172
Number of successful extensions: 4525
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4441
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6776504000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)