Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_K15
(932 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [... 35 0.39
sp|Q700D9|MYBF_ARATH Putative Myb family transcription fact... 33 1.1
sp|Q7M3S9|RNGB_DICDI Ring finger protein B (Protein rngB) 33 1.5
sp|P47820|ACE_RAT Angiotensin-converting enzyme, somatic is... 32 2.0
sp|P38080|AKL1_YEAST Serine/threonine-protein kinase AKL1 32 2.0
sp|Q00816|HEX2_YEAST Protein HEX2 (Protein SRN1) (Protein R... 32 2.0
sp|O55188|DMP1_MOUSE Dentin matrix acidic phosphoprotein 1 ... 32 2.6
sp|P32581|IME2_YEAST Meiosis induction protein kinase IME2/... 32 3.3
sp|Q9P7W6|MLH1_SCHPO Putative MUTL protein homolog 1 (DNA m... 32 3.3
sp|P39705|NUP60_YEAST Nucleoporin NUP60 (Nuclear pore prote... 31 5.7
>sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [Contains: Dentin
phosphoprotein (Dentin phosphophoryn) (DPP); Dentin
sialoprotein (DSP)]
Length = 1253
Score = 34.7 bits (78), Expect = 0.39
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Frame = +3
Query: 63 SRSFSYDTNETVNEADQYLNLNPVQSNRSPHMSKRSNHVPVESENSYDYNNRTDS----E 230
S S S D+++ + +D + N S+ S S S+ +S +S D +N +DS +
Sbjct: 643 SDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSS--DSSSSSDSSNSSDSSDSSD 700
Query: 231 NSYASESFGNREVEDSEKLNHSYSTENEVAKSPSRRYSIASQISQTSE 374
+S +SES + + DS+ + S S+ + + S S S +S S +S+
Sbjct: 701 SSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSDSSD 748
>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600
Length = 255
Score = 33.1 bits (74), Expect = 1.1
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Frame = +3
Query: 63 SRSFSYDTNETVNEADQYLNLNPVQSNRS----PHMSKRSNHVPVESENSYDYNNRTDSE 230
S +F T+ T N+ D +LN+ ++ ++ K +H +E+EN+ + T E
Sbjct: 125 SFNFREQTSATDNDDDDFLNIMNMERTKTFAGNGESIKFQSHHSLEAENTKNIWKNTWRE 184
Query: 231 NSYASESFGNREVEDSEKLNHSYSTENEVAKSPSRRYSIASQISQTSE 374
N + E E+ S LNH ++ + + S S +S+TSE
Sbjct: 185 NEHEEE----EELSLSLSLNHPHNHQQRWKSNAS------SSLSETSE 222
>sp|Q7M3S9|RNGB_DICDI Ring finger protein B (Protein rngB)
Length = 943
Score = 32.7 bits (73), Expect = 1.5
Identities = 37/214 (17%), Positives = 82/214 (38%)
Frame = +3
Query: 63 SRSFSYDTNETVNEADQYLNLNPVQSNRSPHMSKRSNHVPVESENSYDYNNRTDSENSYA 242
S + SY +++++ N N Q+N + + + +N++ + + + NN ++ N+
Sbjct: 392 SLASSYQSSQSLQ-----FNQNQNQNNNNNNNNNNNNNIQTTTTTTTNNNNNNNNNNNNN 446
Query: 243 SESFGNREVEDSEKLNHSYSTENEVAKSPSRRYSIASQISQTSEWRTDYXXXXXXXXXXX 422
+ + + +++ H S + +++S S + S +S T
Sbjct: 447 NNNNNVESNQQQQQIQHQTSPMSVLSRSNSNISLNSLNSSSSSILSTPSTLSTTTTTTTT 506
Query: 423 XXXXXXXXXXXXFNHGRQGFPVKLPFKQRSSSQSNDVRGSGFPESVESGSYLTAEYERPS 602
N R G P PF RSS+ +N+ + S +Y + + +
Sbjct: 507 SHASHTSHTSNRSNGSRGGIPSIPPFNGRSSNHNNN-------NNSNSNNYNNHQQTKTN 559
Query: 603 FNESLEVSNMDSFVLPNGYNEGYSQNDENNSILR 704
E L + + S N Y++ D ++ R
Sbjct: 560 SAEELILEELKSL---NIYDQAACNKDFQTNLKR 590
>sp|P47820|ACE_RAT Angiotensin-converting enzyme, somatic isoform precursor
(Dipeptidyl carboxypeptidase I) (Kininase II) [Contains:
Angiotensin-converting enzyme, somatic isoform, soluble
form]
Length = 1313
Score = 32.3 bits (72), Expect = 2.0
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 465 HGRQGFPVKLPFKQRSSSQSNDV-RGSGFPESVESGSYLTAEYERPSFNESLE 620
H G P++ P Q ++ SN+ R GF ++ G+Y + YE PSF ESLE
Sbjct: 199 HDAVGIPLR-PLYQDFTALSNEAYRQDGFSDT---GAYWRSWYESPSFEESLE 247
>sp|P38080|AKL1_YEAST Serine/threonine-protein kinase AKL1
Length = 1108
Score = 32.3 bits (72), Expect = 2.0
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Frame = +3
Query: 93 TVNEADQYLNL-------NPVQSNRSPHMSKRSNHVPVESENSYDYNNRTDSENSYASES 251
+V+E D YL+ +P S +SP ++ +S +S +SY R+ SY + +
Sbjct: 479 SVSELDTYLDKELVKQSSDPTISEQSPRLNTQSLPQRQKSTSSYSSGGRSMKSTSYGAAT 538
Query: 252 FGNREVEDSEKLNHSYSTENEVAKSPSRRYSIA 350
G+ E +EK + + +P + ++A
Sbjct: 539 IGSDEALANEKTAGINKMKQHKSNNPFPKMNVA 571
>sp|Q00816|HEX2_YEAST Protein HEX2 (Protein SRN1) (Protein REG1)
Length = 1014
Score = 32.3 bits (72), Expect = 2.0
Identities = 15/67 (22%), Positives = 33/67 (49%)
Frame = +3
Query: 75 SYDTNETVNEADQYLNLNPVQSNRSPHMSKRSNHVPVESENSYDYNNRTDSENSYASESF 254
S D N+ + + N+ + +NR+P ++ + +P+ S + N +D + S S S
Sbjct: 490 SDDENKQYVDVNNNANVTTINNNRTPLLAIQHKSIPINSATEHLNKNTSDDDTSSQSSSS 549
Query: 255 GNREVED 275
+ + E+
Sbjct: 550 SHSDDEE 556
>sp|O55188|DMP1_MOUSE Dentin matrix acidic phosphoprotein 1 precursor (Dentin matrix
protein 1) (DMP-1) (AG1)
Length = 503
Score = 32.0 bits (71), Expect = 2.6
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +3
Query: 168 SNHVPVESENSYDYNNRTDSENSYASESFGNREVEDSEKLNHSYSTENEVAKSPSRRYSI 347
SN +S+++ D ++ +S + ++ ++ EDS + S +E A PS+ S
Sbjct: 280 SNSRETQSDSTEDTASKEESRSESQEDTAESQSQEDSPEGQDPSSESSEEAGEPSQESSS 339
Query: 348 ASQISQTSEWRTD 386
SQ TSE R D
Sbjct: 340 ESQEGVTSESRGD 352
>sp|P32581|IME2_YEAST Meiosis induction protein kinase IME2/SME1
Length = 645
Score = 31.6 bits (70), Expect = 3.3
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +3
Query: 81 DTNETVNEADQYL---NLNPVQSNRSPHMSKRSNHVPVESE-NSYDYNNRTDSENSYASE 248
D V +Q L +NPV +N P S +P E+E N D +N ++ S
Sbjct: 395 DARGNVTNTEQALIFAGINPVATNTKPIYFNSSTKLPAETESNDIDISNNDHDSHAMCSP 454
Query: 249 SFGNREVEDSEKLNHSYSTENE 314
+ ++ E LN +N+
Sbjct: 455 TLNQEKLTLVEFLNEFVEEDND 476
>sp|Q9P7W6|MLH1_SCHPO Putative MUTL protein homolog 1 (DNA mismatch repair protein MLH1)
Length = 684
Score = 31.6 bits (70), Expect = 3.3
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Frame = +3
Query: 117 LNLNPVQSNRSPHMSKRSNHVPVESENSY-------DYNNRTDSENSYASE----SFGNR 263
LN++P Q + + H SKR H + E + + RTD+E SY + S N
Sbjct: 307 LNMSPEQLDVNVHPSKRIVHFLYDQEIATSICDKLGEILERTDTERSYPLQAMIPSISNT 366
Query: 264 EVEDSEKLNHSYSTENEVAKSPSRRYSIASQIS 362
+ +S + EN + ++ R SI S +S
Sbjct: 367 KNAESSSQKAVRTYENYLVRTDpreRSIKSMLS 399
>sp|P39705|NUP60_YEAST Nucleoporin NUP60 (Nuclear pore protein NUP60)
Length = 539
Score = 30.8 bits (68), Expect = 5.7
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +3
Query: 162 KRSNHVPVESENSYDYNNRTDSENSYASESFGNREVEDSEKLNHSYSTENEVAKSPSRRY 341
K S P+ N+ +N + D+ N+ + + G+ S K + +YS+ K+ RY
Sbjct: 175 KESGSTPISISNAPTFNPKYDTSNASMNTTLGSI---GSRKYSFNYSSLPSPYKTTVYRY 231
Query: 342 SIASQISQT 368
S A +I T
Sbjct: 232 SAAKKIPDT 240
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,517,397
Number of Sequences: 369166
Number of extensions: 1492220
Number of successful extensions: 4529
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4516
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9606826000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)