Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_K11
(903 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q36424|NU4M_LOCMI NADH-ubiquinone oxidoreductase chain 4... 33 1.4
sp|P47533|P69_MYCGE Transport system permease protein p69 33 1.4
>sp|Q36424|NU4M_LOCMI NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
4)
Length = 444
Score = 32.7 bits (73), Expect = 1.4
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Frame = -3
Query: 622 LINFYFCFIFMAQID*LTKL--VTHQITFLLNLIYL--LFKFNQSSKVNKYFYYSIQN*I 455
++ + F IF+ I L + H + FLL+ I++ L+ ++ S ++ YF + +
Sbjct: 1 MLKYLFMIIFLIPICLLGNCWWLVHSLIFLLSFIFMISLYSYSDLSMISYYFGVDFYSFM 60
Query: 454 ITLLSFANPLTTVIIFKSIFGHLLDASDFTFIQLLI 347
+ LLS + SI+ + F F+ LL+
Sbjct: 61 LILLSLWICCLMITASSSIYSSSYHPNFFVFVVLLL 96
>sp|P47533|P69_MYCGE Transport system permease protein p69
Length = 543
Score = 32.7 bits (73), Expect = 1.4
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 3/135 (2%)
Frame = -3
Query: 574 LTKLVTHQITF--LLNLIYLLFKFNQSSKVNKYFYYSIQN*IITLLSFANPLTTVIIFKS 401
L KL T I+ L+ + +LF F + K F S + LL F + ++++F+
Sbjct: 346 LVKLTTQAISLISLVVIFSILFGFISCNLFKKRFSISFK----ILLLFVRVVPSILLFRL 401
Query: 400 IFGHLLDASDFTFIQLLINFTVVFGELECNMQCRFXXXXXXXXXLYP-HPVVKFAPLIQL 224
+ L+A + LLIN +G+L M F Y H + K L
Sbjct: 402 LDPLFLEAKTTIILVLLINHGSSYGQL---MSINFNKANQNIINNYKNHGMTKGFILWNY 458
Query: 223 LILISTNNFINVSQN 179
L++ + N IN++ +
Sbjct: 459 LLVENKPNLINITSD 473
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,705,539
Number of Sequences: 369166
Number of extensions: 1562468
Number of successful extensions: 3542
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3541
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9126484700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)