Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_J20-1
(285 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZNY3|CRTC_EUGGR Calreticulin precursor 29 2.9
sp|P24975|NU4M_BALPH NADH-ubiquinone oxidoreductase chain 4... 28 8.5
sp|P37136|ACES_RAT Acetylcholinesterase precursor (AChE) 28 8.5
sp|P21836|ACES_MOUSE Acetylcholinesterase precursor (AChE) 28 8.5
sp|P22303|ACES_HUMAN Acetylcholinesterase precursor (AChE) 28 8.5
sp|P36196|ACES_CHICK Acetylcholinesterase precursor (AChE) 28 8.5
sp|Q29499|ACES_RABIT Acetylcholinesterase precursor (AChE) 28 8.5
sp|O62763|ACES_FELCA Acetylcholinesterase precursor (AChE) 28 8.5
sp|P23795|ACES_BOVIN Acetylcholinesterase precursor (AChE) 28 8.5
>sp|Q9ZNY3|CRTC_EUGGR Calreticulin precursor
Length = 401
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 236 PTYWDEMDANKRGDKRLSVPTYFDEWDARKKRSSAHKRLSVP 111
P WDE + K +S P Y EW A+K + A+K + P
Sbjct: 247 PDDWDEEEDGKWEAPMISNPKYKGEWKAKKIPNPAYKGVWKP 288
>sp|P24975|NU4M_BALPH NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
4)
Length = 459
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 8 TIIYSINMFIVSLRVKHSHKISIIVFYCPSLHNMMVLII 124
T +YS+ M I++ R KH+H I+ I H +M L I
Sbjct: 403 TALYSLYMLIMTQRGKHTHHINNITPSFTREHALMALHI 441
>sp|P37136|ACES_RAT Acetylcholinesterase precursor (AChE)
Length = 614
Score = 27.7 bits (60), Expect = 8.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 217 WMPTREVTKDCLYQHILT 164
W P RE+++DCLY ++ T
Sbjct: 117 WNPNRELSEDCLYLNVWT 134
>sp|P21836|ACES_MOUSE Acetylcholinesterase precursor (AChE)
Length = 614
Score = 27.7 bits (60), Expect = 8.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 217 WMPTREVTKDCLYQHILT 164
W P RE+++DCLY ++ T
Sbjct: 117 WNPNRELSEDCLYLNVWT 134
>sp|P22303|ACES_HUMAN Acetylcholinesterase precursor (AChE)
Length = 614
Score = 27.7 bits (60), Expect = 8.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 217 WMPTREVTKDCLYQHILT 164
W P RE+++DCLY ++ T
Sbjct: 117 WNPNRELSEDCLYLNVWT 134
>sp|P36196|ACES_CHICK Acetylcholinesterase precursor (AChE)
Length = 767
Score = 27.7 bits (60), Expect = 8.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 217 WMPTREVTKDCLYQHILT 164
W P RE+++DCLY ++ T
Sbjct: 111 WNPNREMSEDCLYLNVWT 128
>sp|Q29499|ACES_RABIT Acetylcholinesterase precursor (AChE)
Length = 584
Score = 27.7 bits (60), Expect = 8.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 217 WMPTREVTKDCLYQHILT 164
W P RE+++DCLY ++ T
Sbjct: 87 WNPNRELSEDCLYLNVWT 104
>sp|O62763|ACES_FELCA Acetylcholinesterase precursor (AChE)
Length = 611
Score = 27.7 bits (60), Expect = 8.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 217 WMPTREVTKDCLYQHILT 164
W P RE+++DCLY ++ T
Sbjct: 114 WNPNRELSEDCLYLNVWT 131
>sp|P23795|ACES_BOVIN Acetylcholinesterase precursor (AChE)
Length = 613
Score = 27.7 bits (60), Expect = 8.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 217 WMPTREVTKDCLYQHILT 164
W P RE+++DCLY ++ T
Sbjct: 116 WNPNRELSEDCLYLNVWT 133
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,849,252
Number of Sequences: 369166
Number of extensions: 693554
Number of successful extensions: 1931
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1929
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)