Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_J17
(610 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91828|AR11_XENLA Apoptosis regulator R11 (XR11) 54 4e-07
sp|Q07816|BCLX_CHICK Apoptosis regulator Bcl-X (Bcl-2-like ... 54 4e-07
sp|P53563|BCLX_RAT Apoptosis regulator Bcl-X (Bcl-2-like 1 ... 50 4e-06
sp|Q64373|BCLX_MOUSE Apoptosis regulator Bcl-X (Bcl-2-like ... 50 4e-06
sp|Q07817|BCLX_HUMAN Apoptosis regulator Bcl-X (Bcl-2-like ... 50 6e-06
sp|Q00709|BCL2_CHICK Apoptosis regulator Bcl-2 49 1e-05
sp|O77737|BCLX_PIG Apoptosis regulator Bcl-X (Bcl-2-like 1 ... 49 1e-05
sp|P10415|BCL2_HUMAN Apoptosis regulator Bcl-2 48 2e-05
sp|Q9JJV8|BCL2_CRIGR Apoptosis regulator Bcl-2 48 2e-05
sp|P10417|BCL2_MOUSE Apoptosis regulator Bcl-2 48 2e-05
>sp|Q91828|AR11_XENLA Apoptosis regulator R11 (XR11)
Length = 204
Score = 53.5 bits (127), Expect = 4e-07
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 7/145 (4%)
Frame = +3
Query: 126 EDEMILSLHNLVNDARERGKETISNFKLVLNKHTDEEKKISFYDVVESLFEDCIKWSRVI 305
E+E++ +L + R + S+ L+ D ++ SF V+ LF D W R++
Sbjct: 55 EEEVLQALLEATEEFELRYQRAFSDLTSQLHITQDTAQQ-SFQQVMGELFRDGTNWGRIV 113
Query: 306 VAFMY-----IVQVLKISQKEYDKYYNWSIELVLTKIHPWVRENGGWEHIIQL--SNSRN 464
F + + K + W + + + PW++ENGGWE + L N+
Sbjct: 114 AFFSFGRALCVESANKEMTDLLPRIVQWMVNYLEHTLQPWMQENGGWEAFVGLYGKNAAA 173
Query: 465 HLDEVTDLFKKLGTVALGITGLFAL 539
E + F +L T+ + +TG+FAL
Sbjct: 174 QSRESQERFGRLLTIVM-LTGVFAL 197
>sp|Q07816|BCLX_CHICK Apoptosis regulator Bcl-X (Bcl-2-like 1 protein)
Length = 229
Score = 53.5 bits (127), Expect = 4e-07
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Frame = +3
Query: 246 SFYDVVESLFEDCIKWSRVIVAFMY-----IVQVLKISQKEYDKYYNWSIELVLTKIHPW 410
SF VV LF D + W R++ F + + V K + + +W + + PW
Sbjct: 118 SFEQVVNELFHDGVNWGRIVAFFSFGGALCVESVDKEMRVLVGRIVSWMTTYLTDHLDPW 177
Query: 411 VRENGGWEHIIQL--SNSRNHLDEVTDLFKKLGTVALGITGLFALG 542
++ENGGWE + L +N+ L + + F K + G+ LG
Sbjct: 178 IQENGGWERFVDLYGNNAAAELRKGQETFNKWLLTGATVAGVLLLG 223
>sp|P53563|BCLX_RAT Apoptosis regulator Bcl-X (Bcl-2-like 1 protein)
Length = 233
Score = 50.1 bits (118), Expect = 4e-06
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Frame = +3
Query: 246 SFYDVVESLFEDCIKWSRVIVAFMY-----IVQVLKISQKEYDKYYNWSIELVLTKIHPW 410
SF VV LF D + W R++ F + + V K Q + +W + + PW
Sbjct: 122 SFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPW 181
Query: 411 VRENGGWEHIIQL--SNSRNHLDEVTDLFKKLGTVALGITGLFALG 542
++ENGGW+ + L +N+ + + F + + + G+ LG
Sbjct: 182 IQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLG 227
>sp|Q64373|BCLX_MOUSE Apoptosis regulator Bcl-X (Bcl-2-like 1 protein)
Length = 233
Score = 50.1 bits (118), Expect = 4e-06
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Frame = +3
Query: 246 SFYDVVESLFEDCIKWSRVIVAFMY-----IVQVLKISQKEYDKYYNWSIELVLTKIHPW 410
SF VV LF D + W R++ F + + V K Q + +W + + PW
Sbjct: 122 SFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPW 181
Query: 411 VRENGGWEHIIQL--SNSRNHLDEVTDLFKKLGTVALGITGLFALG 542
++ENGGW+ + L +N+ + + F + + + G+ LG
Sbjct: 182 IQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLG 227
>sp|Q07817|BCLX_HUMAN Apoptosis regulator Bcl-X (Bcl-2-like 1 protein)
Length = 233
Score = 49.7 bits (117), Expect = 6e-06
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Frame = +3
Query: 246 SFYDVVESLFEDCIKWSRVIVAFMY-----IVQVLKISQKEYDKYYNWSIELVLTKIHPW 410
SF VV LF D + W R++ F + + V K Q + W + + PW
Sbjct: 122 SFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPW 181
Query: 411 VRENGGWEHIIQL--SNSRNHLDEVTDLFKKLGTVALGITGLFALG 542
++ENGGW+ ++L +N+ + + F + + + G+ LG
Sbjct: 182 IQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLG 227
>sp|Q00709|BCL2_CHICK Apoptosis regulator Bcl-2
Length = 233
Score = 48.9 bits (115), Expect = 1e-05
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 249 FYDVVESLFEDCIKWSRVIVAF-----MYIVQVLKISQKEYDKYYNWSIELVLTKIHPWV 413
F VVE LF D + W R++ F M + V + D W E + +H W+
Sbjct: 124 FVAVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIATWMTEYLNRHLHNWI 183
Query: 414 RENGGWEHIIQL 449
++NGGW+ ++L
Sbjct: 184 QDNGGWDAFVEL 195
>sp|O77737|BCLX_PIG Apoptosis regulator Bcl-X (Bcl-2-like 1 protein)
Length = 233
Score = 48.9 bits (115), Expect = 1e-05
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Frame = +3
Query: 246 SFYDVVESLFEDCIKWSRVIVAFMY-----IVQVLKISQKEYDKYYNWSIELVLTKIHPW 410
SF V+ LF D + W R++ F + + V K Q + W + + PW
Sbjct: 122 SFEQVLNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIATWMATYLNDHLEPW 181
Query: 411 VRENGGWEHIIQL--SNSRNHLDEVTDLFKKLGTVALGITGLFALG 542
++ENGGW+ ++L +N+ + + F + + + G+ LG
Sbjct: 182 IQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTLAGVVLLG 227
>sp|P10415|BCL2_HUMAN Apoptosis regulator Bcl-2
Length = 239
Score = 48.1 bits (113), Expect = 2e-05
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 249 FYDVVESLFEDCIKWSRVIVAF-----MYIVQVLKISQKEYDKYYNWSIELVLTKIHPWV 413
F VVE LF D + W R++ F M + V + D W E + +H W+
Sbjct: 130 FATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWI 189
Query: 414 RENGGWEHIIQL 449
++NGGW+ ++L
Sbjct: 190 QDNGGWDAFVEL 201
>sp|Q9JJV8|BCL2_CRIGR Apoptosis regulator Bcl-2
Length = 236
Score = 48.1 bits (113), Expect = 2e-05
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 249 FYDVVESLFEDCIKWSRVIVAF-----MYIVQVLKISQKEYDKYYNWSIELVLTKIHPWV 413
F VVE LF D + W R++ F M + V + D W E + +H W+
Sbjct: 127 FATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWI 186
Query: 414 RENGGWEHIIQL 449
++NGGW+ ++L
Sbjct: 187 QDNGGWDAFVEL 198
>sp|P10417|BCL2_MOUSE Apoptosis regulator Bcl-2
Length = 236
Score = 48.1 bits (113), Expect = 2e-05
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 249 FYDVVESLFEDCIKWSRVIVAF-----MYIVQVLKISQKEYDKYYNWSIELVLTKIHPWV 413
F VVE LF D + W R++ F M + V + D W E + +H W+
Sbjct: 127 FATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWI 186
Query: 414 RENGGWEHIIQL 449
++NGGW+ ++L
Sbjct: 187 QDNGGWDAFVEL 198
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,689,280
Number of Sequences: 369166
Number of extensions: 1559350
Number of successful extensions: 4492
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4474
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)