Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_J13
(314 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9XIE6|ALA3_ARATH Putative phospholipid-transporting ATP... 30 1.3
sp|Q63358|MYO9B_RAT Myosin-9B (Myosin IXb) (Unconventional ... 30 2.2
sp|Q9QY06|MYO9B_MOUSE Myosin-9B (Myosin IXb) (Unconventiona... 30 2.2
sp|Q7NK22|PYRF_GLOVI Orotidine 5'-phosphate decarboxylase (... 29 2.9
sp|Q5MAI5|CDKL4_HUMAN Cyclin-dependent kinase-like 4 29 3.8
>sp|Q9XIE6|ALA3_ARATH Putative phospholipid-transporting ATPase 3 (Aminophospholipid
flippase 3)
Length = 1213
Score = 30.4 bits (67), Expect = 1.3
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 67 KWRVTTVWRMSKCLQCRICGLFSVTS 144
KWRV VW S Q +C LF TS
Sbjct: 981 KWRVVAVWATSAVYQSLVCYLFVTTS 1006
>sp|Q63358|MYO9B_RAT Myosin-9B (Myosin IXb) (Unconventional myosin-9b)
Length = 1980
Score = 29.6 bits (65), Expect = 2.2
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 85 VWRMSKCLQCRICGLFSVTSCCHRTDGYFMFNSSR 189
+W M K L C +C + C H+ Y + R
Sbjct: 1613 IWLMDKALLCSVCKMTCHKKCVHKIQSYCSYTGRR 1647
>sp|Q9QY06|MYO9B_MOUSE Myosin-9B (Myosin IXb) (Unconventional myosin-9b)
Length = 2114
Score = 29.6 bits (65), Expect = 2.2
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 85 VWRMSKCLQCRICGLFSVTSCCHRTDGYFMFNSSR 189
+W M K L C +C + C H+ Y + R
Sbjct: 1611 IWLMDKALLCSVCKMTCHKKCVHKIQSYCSYTGRR 1645
>sp|Q7NK22|PYRF_GLOVI Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase)
(OMPdecase)
Length = 237
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 35 AMIIIILFNQINGGLLPYGACQSVCNAGYVACLASLAVATGPMAISCS 178
A++ + L ++ LL +V +GYV LA LAV++G + CS
Sbjct: 116 AVLAVTLLTSLDAQLLEQQLLVNVGVSGYVEHLAVLAVSSGVQGVVCS 163
>sp|Q5MAI5|CDKL4_HUMAN Cyclin-dependent kinase-like 4
Length = 315
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 161 SVLWQQLVTLNKPHILHCKHFDMR 90
SVLWQ L LN HI +C H D++
Sbjct: 105 SVLWQTLQALNFCHIHNCIHRDIK 128
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,918,466
Number of Sequences: 369166
Number of extensions: 603233
Number of successful extensions: 1463
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1462
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)