Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_J03
(512 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O00754|MA2B1_HUMAN Lysosomal alpha-mannosidase precursor... 30 2.6
sp|P27610|HMIN_BOMMO Homeobox protein invected 30 3.3
sp|Q7M157|PSBL_PROHO Photosystem II reaction center L prote... 30 4.4
sp|Q03211|PEXLP_TOBAC Pistil-specific extensin-like protein... 29 5.7
sp|Q8MEX3|MATK_EPHSI Maturase K (Intron maturase) 29 7.5
sp|P35475|IDUA_HUMAN Alpha-L-iduronidase precursor 28 9.7
sp|Q03690|IF3X_YEAST Eukaryotic translation initiation fact... 28 9.7
sp|Q5R874|DHX9_PONPY ATP-dependent RNA helicase A (Nuclear ... 28 9.7
sp|Q08211|DHX9_HUMAN ATP-dependent RNA helicase A (Nuclear ... 28 9.7
>sp|O00754|MA2B1_HUMAN Lysosomal alpha-mannosidase precursor (Mannosidase, alpha B)
(Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase
alpha class 2B member 1) [Contains: Lysosomal
alpha-mannosidase A peptide; Lysosomal alpha-mannosidase
B peptide; Lysosomal alpha-mannosidase C peptide;
Lysosomal alpha-mannosidase D peptide; Lysosomal
alpha-mannosidase E peptide]
Length = 1010
Score = 30.4 bits (67), Expect = 2.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 166 QSPIPLRRPLQTHCLQRPLIQRTHRN 89
Q P+P+ R Q H ++ PL+Q H+N
Sbjct: 666 QKPLPVSRWAQIHLVKTPLVQEVHQN 691
>sp|P27610|HMIN_BOMMO Homeobox protein invected
Length = 476
Score = 30.0 bits (66), Expect = 3.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 226 PLLAHPNPFLGIHPNPILLLQSPIPLRRPLQTHCLQ 119
PLL P+P I+PNPI+ L P+ + P+ + L+
Sbjct: 162 PLLLRPSP---INPNPIMFLNQPLLFQSPILSQDLK 194
>sp|Q7M157|PSBL_PROHO Photosystem II reaction center L protein (PSII-L) (PSII 5 kDa
protein)
Length = 38
Score = 29.6 bits (65), Expect = 4.4
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -3
Query: 312 NNQHIERSVFSLFSGRIFYFLFQISFTSFLF 220
N+Q +E + SLF GR+ F+ I F+S++F
Sbjct: 7 NSQPVELNRTSLFLGRLLIFVLGILFSSYIF 37
>sp|Q03211|PEXLP_TOBAC Pistil-specific extensin-like protein precursor (PELP)
Length = 426
Score = 29.3 bits (64), Expect = 5.7
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -2
Query: 271 WEDLLLPFPNQLYELPLLAHPNPFLGIHPNPILLLQSPIPLRRP 140
W +L LPF E+PL P+PF G P +L P PL P
Sbjct: 31 WLELPLPFDWPPAEIPLPDIPSPFDG----PTFVLPPPSPLPSP 70
>sp|Q8MEX3|MATK_EPHSI Maturase K (Intron maturase)
Length = 531
Score = 28.9 bits (63), Expect = 7.5
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = -3
Query: 357 KQFLIFIKCSVKSMNNNQHIERSVFSLFSGRIFYFLFQISFTSFLF*LIP--IHSSGFI- 187
K F F K + K +N + + SVFSLF F+F +SF++ IP IHS I
Sbjct: 110 KHFFGF-KVTFKEINQQVNFQ-SVFSLFLFLEEVFMFSLSFSNI---RIPSSIHSELLIR 164
Query: 186 RIQFSFSRVRFLFVALFKL 130
R +FS V FL F L
Sbjct: 165 RFKFSIQDVSFLHFLSFIL 183
>sp|P35475|IDUA_HUMAN Alpha-L-iduronidase precursor
Length = 653
Score = 28.5 bits (62), Expect = 9.7
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = -2
Query: 268 EDLLLPFPNQLYELPLLAHPNPFLGIHPNPI----LLLQSPIPLRRPLQTHCLQRPLI 107
++LLL + LL++ N FL HP+P L + + RP L++P++
Sbjct: 330 QNLLLANTTSAFPYALLSNDNAFLSYHPHPFAQRTLTARFQVNNTRPPHVQLLRKPVL 387
>sp|Q03690|IF3X_YEAST Eukaryotic translation initiation factor 3 135 kDa subunit (eIF3
p135) (Translation initiation factor eIF3, p135 subunit)
Length = 1277
Score = 28.5 bits (62), Expect = 9.7
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 17/76 (22%)
Frame = -2
Query: 379 YNNLSLQETIFNFYKMLCKIYEQ*STHRTISVFAFFWEDLLLPFPNQ------------- 239
YN L+L F + C IYE+ S + + +L F N+
Sbjct: 1030 YNKLALYPEAIAFCRKACTIYERVSGIDSFEMMRALTNLAILEFSNESPYNATVVYNRLA 1089
Query: 238 ----LYELPLLAHPNP 203
+YELP + HP P
Sbjct: 1090 EILKVYELPKIHHPAP 1105
>sp|Q5R874|DHX9_PONPY ATP-dependent RNA helicase A (Nuclear DNA helicase II) (NDH II)
(DEAH-box protein 9)
Length = 1269
Score = 28.5 bits (62), Expect = 9.7
Identities = 23/75 (30%), Positives = 31/75 (41%)
Frame = -2
Query: 376 NNLSLQETIFNFYKMLCKIYEQ*STHRTISVFAFFWEDLLLPFPNQLYELPLLAHPNPFL 197
+ L+ +ET F + L K E + + VF LP N +Y + NP
Sbjct: 625 SQLNEKETPFELIEALLKYIETLNVPGAVLVF--------LPGWNLIYTMQKHLEMNPHF 676
Query: 196 GIHPNPILLLQSPIP 152
G H IL L S IP
Sbjct: 677 GSHRYQILPLHSQIP 691
>sp|Q08211|DHX9_HUMAN ATP-dependent RNA helicase A (Nuclear DNA helicase II) (NDH II)
(DEAH-box protein 9)
Length = 1270
Score = 28.5 bits (62), Expect = 9.7
Identities = 23/75 (30%), Positives = 31/75 (41%)
Frame = -2
Query: 376 NNLSLQETIFNFYKMLCKIYEQ*STHRTISVFAFFWEDLLLPFPNQLYELPLLAHPNPFL 197
+ L+ +ET F + L K E + + VF LP N +Y + NP
Sbjct: 625 SQLNEKETPFELIEALLKYIETLNVPGAVLVF--------LPGWNLIYTMQKHLEMNPHF 676
Query: 196 GIHPNPILLLQSPIP 152
G H IL L S IP
Sbjct: 677 GSHRYQILPLHSQIP 691
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,883,137
Number of Sequences: 369166
Number of extensions: 898384
Number of successful extensions: 2629
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2626
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3304927425
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)