Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_J02
(925 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17438|DHX15_STRPU Putative pre-mRNA splicing factor ATP... 506 e-143
sp|O35286|DHX15_MOUSE Putative pre-mRNA splicing factor RNA... 505 e-143
sp|O43143|DHX15_HUMAN Putative pre-mRNA splicing factor RNA... 505 e-143
sp|Q20875|DHX15_CAEEL Putative pre-mRNA splicing factor ATP... 461 e-129
sp|O22899|DHX15_ARATH Putative pre-mRNA splicing factor ATP... 446 e-125
sp|O42945|DHX15_SCHPO Probable pre-mRNA splicing factor RNA... 408 e-113
sp|P53131|PRP43_YEAST Pre-mRNA splicing factor RNA helicase... 404 e-112
sp|Q38953|DHX8_ARATH Putative pre-mRNA splicing factor ATP-... 335 8e-92
sp|Q14562|DHX8_HUMAN ATP-dependent helicase DHX8 (RNA helic... 330 3e-90
sp|O42643|DHX8_SCHPO Putative pre-mRNA splicing factor ATP-... 326 6e-89
>sp|O17438|DHX15_STRPU Putative pre-mRNA splicing factor ATP-dependent RNA helicase PRP1
Length = 455
Score = 506 bits (1302), Expect = e-143
Identities = 252/294 (85%), Positives = 270/294 (91%)
Frame = +3
Query: 39 LLDEAHERTLATDILMGLLKEVIKVRTDLKIVIMSATLDAGKFQEYFGNAPLMKVPGRTH 218
LLDEAHERT+ATDILMGLLKEV K R+DLK+V+MSATLDAGKFQ YF NAPLM VPGRTH
Sbjct: 26 LLDEAHERTVATDILMGLLKEVEKQRSDLKLVVMSATLDAGKFQHYFDNAPLMTVPGRTH 85
Query: 219 PVEIFYTPEPEKDYLEAAIRTVIQIHMCEESEGDILVFLTGQEEIDEACKRIQREVENLG 398
PVEIFYTPEPE+DYLEAAIRTV+QIHMCEE EGD+L+FLTGQEEI+EACKRI+REV+NLG
Sbjct: 86 PVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKREVDNLG 145
Query: 399 PEVGELKCIPLYSTLPPNLQQRIFEPPPPKKANGAIGRKVVVSTNIAETSLTIDGVVFVI 578
PEVG+LK IPLYSTLPP +QQRIFE PP KANGAIGRKVVVSTNIAETSLTIDGVVFVI
Sbjct: 146 PEVGDLKTIPLYSTLPPAMQQRIFEHAPPNKANGAIGRKVVVSTNIAETSLTIDGVVFVI 205
Query: 579 DPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLYTEKGYNNEMHEN 758
DPGFAKQKV+NPRIRVESLLV+PISKAS TRPGKCFRLYTEK Y++EM +N
Sbjct: 206 DPGFAKQKVYNPRIRVESLLVSPISKASAQQRVGRAGRTRPGKCFRLYTEKAYDSEMQDN 265
Query: 759 TYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDD 920
TYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYL ALDD
Sbjct: 266 TYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDD 319
>sp|O35286|DHX15_MOUSE Putative pre-mRNA splicing factor RNA helicase (DEAH box protein 15)
Length = 795
Score = 505 bits (1301), Expect = e-143
Identities = 248/295 (84%), Positives = 270/295 (91%)
Frame = +3
Query: 39 LLDEAHERTLATDILMGLLKEVIKVRTDLKIVIMSATLDAGKFQEYFGNAPLMKVPGRTH 218
+LDEAHERTLATDILMG+LKEV++ R+DLK+++MSATLDAGKFQ YF N PL+ +PGRTH
Sbjct: 258 ILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQIYFDNCPLLTIPGRTH 317
Query: 219 PVEIFYTPEPEKDYLEAAIRTVIQIHMCEESEGDILVFLTGQEEIDEACKRIQREVENLG 398
PVEIFYTPEPE+DYLEAAIRTVIQIHMCEE EGD+L+FLTGQEEIDEACKRI+REV++LG
Sbjct: 318 PVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKREVDDLG 377
Query: 399 PEVGELKCIPLYSTLPPNLQQRIFEPPPPKKANGAIGRKVVVSTNIAETSLTIDGVVFVI 578
PEVG++K IPLYSTLPP QQRIFEPPPPKK NGAIGRKVVVSTNIAETSLTIDGVVFVI
Sbjct: 378 PEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTIDGVVFVI 437
Query: 579 DPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLYTEKGYNNEMHEN 758
DPGFAKQKV+NPRIRVESLLVT ISKAS TRPGKCFRLYTEK Y EM +N
Sbjct: 438 DPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDN 497
Query: 759 TYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDD 923
TYPEILRSNLG+VVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAAL+DD
Sbjct: 498 TYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDD 552
>sp|O43143|DHX15_HUMAN Putative pre-mRNA splicing factor RNA helicase (DEAH box protein 15)
(ATP-dependent RNA helicase #46)
Length = 795
Score = 505 bits (1301), Expect = e-143
Identities = 248/295 (84%), Positives = 270/295 (91%)
Frame = +3
Query: 39 LLDEAHERTLATDILMGLLKEVIKVRTDLKIVIMSATLDAGKFQEYFGNAPLMKVPGRTH 218
+LDEAHERTLATDILMG+LKEV++ R+DLK+++MSATLDAGKFQ YF N PL+ +PGRTH
Sbjct: 258 ILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQIYFDNCPLLTIPGRTH 317
Query: 219 PVEIFYTPEPEKDYLEAAIRTVIQIHMCEESEGDILVFLTGQEEIDEACKRIQREVENLG 398
PVEIFYTPEPE+DYLEAAIRTVIQIHMCEE EGD+L+FLTGQEEIDEACKRI+REV++LG
Sbjct: 318 PVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKREVDDLG 377
Query: 399 PEVGELKCIPLYSTLPPNLQQRIFEPPPPKKANGAIGRKVVVSTNIAETSLTIDGVVFVI 578
PEVG++K IPLYSTLPP QQRIFEPPPPKK NGAIGRKVVVSTNIAETSLTIDGVVFVI
Sbjct: 378 PEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTIDGVVFVI 437
Query: 579 DPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLYTEKGYNNEMHEN 758
DPGFAKQKV+NPRIRVESLLVT ISKAS TRPGKCFRLYTEK Y EM +N
Sbjct: 438 DPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDN 497
Query: 759 TYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDD 923
TYPEILRSNLG+VVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAAL+DD
Sbjct: 498 TYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDD 552
>sp|Q20875|DHX15_CAEEL Putative pre-mRNA splicing factor ATP-dependent RNA helicase F56D2.6
Length = 739
Score = 461 bits (1185), Expect = e-129
Identities = 227/295 (76%), Positives = 253/295 (85%)
Frame = +3
Query: 39 LLDEAHERTLATDILMGLLKEVIKVRTDLKIVIMSATLDAGKFQEYFGNAPLMKVPGRTH 218
+LDEAHERTLATDILMGL+KE+++ R D+K+VIMSATLDAGKFQ YF + PL+ VPGRT
Sbjct: 202 ILDEAHERTLATDILMGLIKEIVRNRADIKVVIMSATLDAGKFQRYFEDCPLLSVPGRTF 261
Query: 219 PVEIFYTPEPEKDYLEAAIRTVIQIHMCEESEGDILVFLTGQEEIDEACKRIQREVENLG 398
PVEIF+TP EKDYLEAAIRTVIQIHM EE EGDIL+FLTGQEEI+EACKRI RE++ LG
Sbjct: 262 PVEIFFTPNAEKDYLEAAIRTVIQIHMVEEVEGDILLFLTGQEEIEEACKRIDREIQALG 321
Query: 399 PEVGELKCIPLYSTLPPNLQQRIFEPPPPKKANGAIGRKVVVSTNIAETSLTIDGVVFVI 578
+ G L CIPLYSTLPP QQRIFEP PP + NGAI RK V+STNIAETSLTIDGVVFVI
Sbjct: 322 ADAGALSCIPLYSTLPPAAQQRIFEPAPPNRPNGAISRKCVISTNIAETSLTIDGVVFVI 381
Query: 579 DPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLYTEKGYNNEMHEN 758
DPGF+KQKV+NPRIRVESLLV PISKAS T+PGKCFRLYTE Y +EM +
Sbjct: 382 DPGFSKQKVYNPRIRVESLLVCPISKASAMQRAGRAGRTKPGKCFRLYTETAYGSEMQDQ 441
Query: 759 TYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDD 923
TYPEILRSNLG+VVLQLKKLG +DLVHFDFMDPPAPETLMRALELLNYL A++DD
Sbjct: 442 TYPEILRSNLGSVVLQLKKLGTEDLVHFDFMDPPAPETLMRALELLNYLQAINDD 496
>sp|O22899|DHX15_ARATH Putative pre-mRNA splicing factor ATP-dependent RNA helicase
Length = 729
Score = 446 bits (1148), Expect = e-125
Identities = 221/296 (74%), Positives = 252/296 (85%), Gaps = 1/296 (0%)
Frame = +3
Query: 39 LLDEAHERTLATDILMGLLKEVIKVRTDLKIVIMSATLDAGKFQEYFGNAPLMKVPGRTH 218
+LDEAHERTLATD+L GLLKEV++ R DLK+V+MSATL+A KFQEYF APLMKVPGR H
Sbjct: 189 ILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLH 248
Query: 219 PVEIFYTPEPEKDYLEAAIRTVIQIHMCEESEGDILVFLTGQEEIDEACKRIQREVENLG 398
PVEIFYT EPE+DYLEAAIRTV+QIHMCE GDILVFLTG+EEI++AC++I +EV NLG
Sbjct: 249 PVEIFYTQEPERDYLEAAIRTVVQIHMCEPP-GDILVFLTGEEEIEDACRKINKEVSNLG 307
Query: 399 PEVGELKCIPLYSTLPPNLQQRIFEPPP-PKKANGAIGRKVVVSTNIAETSLTIDGVVFV 575
+VG +K +PLYSTLPP +QQ+IF+P P P G GRK+VVSTNIAETSLTIDG+V+V
Sbjct: 308 DQVGPVKVVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLTIDGIVYV 367
Query: 576 IDPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLYTEKGYNNEMHE 755
IDPGFAKQKV+NPRIRVESLLV+PISKAS TRPGKCFRLYTEK +NN++
Sbjct: 368 IDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQP 427
Query: 756 NTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDD 923
TYPEILRSNL VL LKKLGIDDLVHFDFMDPPAPETLMRALE+LNYL ALDD+
Sbjct: 428 QTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDE 483
>sp|O42945|DHX15_SCHPO Probable pre-mRNA splicing factor RNA helicase prp43
Length = 735
Score = 408 bits (1048), Expect = e-113
Identities = 206/297 (69%), Positives = 245/297 (82%), Gaps = 2/297 (0%)
Frame = +3
Query: 39 LLDEAHERTLATDILMGLLKEVIKVRTDLKIVIMSATLDAGKFQEYFGNAPLMKVPGRTH 218
+LDEAHERTLATDILMGL+K + R DLKI++MSATLDA KFQ+YF +APL+ VPGRT+
Sbjct: 195 ILDEAHERTLATDILMGLMKRLATRRPDLKIIVMSATLDAKKFQKYFFDAPLLAVPGRTY 254
Query: 219 PVEIFYTPEPEKDYLEAAIRTVIQIHMCEESEGDILVFLTGQEEIDEACKRIQREVENLG 398
PVEI+YT EPE+DYLEAA+RTV+QIH+ EE GDILVFLTG+EEI++AC++I E ++L
Sbjct: 255 PVEIYYTQEPERDYLEAALRTVLQIHV-EEGPGDILVFLTGEEEIEDACRKITLEADDLV 313
Query: 399 PE--VGELKCIPLYSTLPPNLQQRIFEPPPPKKANGAIGRKVVVSTNIAETSLTIDGVVF 572
E G LK PLY +LPPN QQRIFEP P +G GRKVV+STNIAETSLTIDG+V+
Sbjct: 314 REGAAGPLKVYPLYGSLPPNQQQRIFEPTPEDTKSG-YGRKVVISTNIAETSLTIDGIVY 372
Query: 573 VIDPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLYTEKGYNNEMH 752
V+DPGF+KQK++NPRIRVESLLV+PISKAS TRPGKCFRLYTE+ + E+
Sbjct: 373 VVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFRKELI 432
Query: 753 ENTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDD 923
E TYPEILRSNL + VL+LKKLGIDDLVHFD+MDPPAPET+MRALE LNYL LDD+
Sbjct: 433 EQTYPEILRSNLSSTVLELKKLGIDDLVHFDYMDPPAPETMMRALEELNYLNCLDDN 489
>sp|P53131|PRP43_YEAST Pre-mRNA splicing factor RNA helicase PRP43 (Helicase JA1)
Length = 767
Score = 404 bits (1037), Expect = e-112
Identities = 205/297 (69%), Positives = 246/297 (82%), Gaps = 2/297 (0%)
Frame = +3
Query: 39 LLDEAHERTLATDILMGLLKEVIKVRTDLKIVIMSATLDAGKFQEYFGNAPLMKVPGRTH 218
+LDEAHERTLATDILMGLLK+V+K R DLKI+IMSATLDA KFQ YF +APL+ VPGRT+
Sbjct: 213 ILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTY 272
Query: 219 PVEIFYTPEPEKDYLEAAIRTVIQIHMCEESEGDILVFLTGQEEIDEACKRIQREVENLG 398
PVE++YTPE ++DYL++AIRTV+QIH EE+ GDIL+FLTG++EI++A ++I E + L
Sbjct: 273 PVELYYTPEFQRDYLDSAIRTVLQIHATEEA-GDILLFLTGEDEIEDAVRKISLEGDQLV 331
Query: 399 PE--VGELKCIPLYSTLPPNLQQRIFEPPPPKKANGAIGRKVVVSTNIAETSLTIDGVVF 572
E G L PLY +LPP+ QQRIFEP P + NG GRKVV+STNIAETSLTIDG+V+
Sbjct: 332 REEGCGPLSVYPLYGSLPPHQQQRIFEPAP-ESHNGRPGRKVVISTNIAETSLTIDGIVY 390
Query: 573 VIDPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLYTEKGYNNEMH 752
V+DPGF+KQKV+NPRIRVESLLV+PISKAS TRPGKCFRLYTE+ + E+
Sbjct: 391 VVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELI 450
Query: 753 ENTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDD 923
E +YPEILRSNL + VL+LKKLGIDDLVHFDFMDPPAPET+MRALE LNYLA LDD+
Sbjct: 451 EQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDE 507
>sp|Q38953|DHX8_ARATH Putative pre-mRNA splicing factor ATP-dependent RNA helicase
Length = 1168
Score = 335 bits (860), Expect = 8e-92
Identities = 168/295 (56%), Positives = 214/295 (72%)
Frame = +3
Query: 39 LLDEAHERTLATDILMGLLKEVIKVRTDLKIVIMSATLDAGKFQEYFGNAPLMKVPGRTH 218
+LDEAHERT+ TD+L GLLK+++K R DL++++ SATLDA KF YF N + +PGRT
Sbjct: 633 MLDEAHERTIHTDVLFGLLKKLMKRRLDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTF 692
Query: 219 PVEIFYTPEPEKDYLEAAIRTVIQIHMCEESEGDILVFLTGQEEIDEACKRIQREVENLG 398
PVEI YT +PE DYL+AA+ TV+QIH+ E EGDILVFLTGQEEID AC+ + ++ LG
Sbjct: 693 PVEILYTKQPETDYLDAALITVLQIHLTEP-EGDILVFLTGQEEIDSACQSLYERMKGLG 751
Query: 399 PEVGELKCIPLYSTLPPNLQQRIFEPPPPKKANGAIGRKVVVSTNIAETSLTIDGVVFVI 578
V EL +P+YS LP +Q RIF+PPPP K RKVVV+TNIAE SLTIDG+ +V+
Sbjct: 752 KNVPELIILPVYSALPSEMQSRIFDPPPPGK------RKVVVATNIAEASLTIDGIYYVV 805
Query: 579 DPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLYTEKGYNNEMHEN 758
DPGFAKQ V+NP+ +ESL++TPIS+AS T PGKC+RLYTE Y NEM
Sbjct: 806 DPGFAKQNVYNPKQGLESLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPT 865
Query: 759 TYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDD 923
+ PEI R NLG L +K +GI+DL+ FDFMDPP P+ L+ A+E L L ALD++
Sbjct: 866 SIPEIQRINLGMTTLTMKAMGINDLLSFDFMDPPQPQALISAMEQLYSLGALDEE 920
>sp|Q14562|DHX8_HUMAN ATP-dependent helicase DHX8 (RNA helicase HRH1) (DEAH-box protein 8)
Length = 1220
Score = 330 bits (846), Expect = 3e-90
Identities = 164/295 (55%), Positives = 215/295 (72%)
Frame = +3
Query: 39 LLDEAHERTLATDILMGLLKEVIKVRTDLKIVIMSATLDAGKFQEYFGNAPLMKVPGRTH 218
+LDEAHERT+ TD+L GLLK+ ++ R D+K+++ SATLDA KF +YF AP+ +PGRT+
Sbjct: 683 MLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTY 742
Query: 219 PVEIFYTPEPEKDYLEAAIRTVIQIHMCEESEGDILVFLTGQEEIDEACKRIQREVENLG 398
PVEI YT EPE DYL+A++ TV+QIH+ E GDILVFLTGQEEID AC+ + +++LG
Sbjct: 743 PVEILYTKEPETDYLDASLITVMQIHLTEPP-GDILVFLTGQEEIDTACEILYERMKSLG 801
Query: 399 PEVGELKCIPLYSTLPPNLQQRIFEPPPPKKANGAIGRKVVVSTNIAETSLTIDGVVFVI 578
P+V EL +P+YS LP +Q RIF+P PP RKVV++TNIAETSLTIDG+ +V+
Sbjct: 802 PDVPELIILPVYSALPSEMQTRIFDPAPPGS------RKVVIATNIAETSLTIDGIYYVV 855
Query: 579 DPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLYTEKGYNNEMHEN 758
DPGF KQKV+N + ++ L+VTPIS+A T PGKC+RLYTE+ Y +EM
Sbjct: 856 DPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTT 915
Query: 759 TYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDD 923
PEI R+NL + VL LK +GI+DL+ FDFMD P ETL+ A+E L L ALDD+
Sbjct: 916 NVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDE 970
>sp|O42643|DHX8_SCHPO Putative pre-mRNA splicing factor ATP-dependent RNA helicase
C10F6.02c
Length = 1168
Score = 326 bits (835), Expect = 6e-89
Identities = 161/295 (54%), Positives = 211/295 (71%)
Frame = +3
Query: 39 LLDEAHERTLATDILMGLLKEVIKVRTDLKIVIMSATLDAGKFQEYFGNAPLMKVPGRTH 218
+LDEAHERT+ATD+L GLLK + R DLK+++ SATLDA +F YF P+ +PGR++
Sbjct: 629 ILDEAHERTVATDVLFGLLKGTVLKRPDLKLIVTSATLDAERFSSYFYKCPIFTIPGRSY 688
Query: 219 PVEIFYTPEPEKDYLEAAIRTVIQIHMCEESEGDILVFLTGQEEIDEACKRIQREVENLG 398
PVEI YT +PE DYL+AA+ TV+QIH+ E GDILVFLTGQEEID +C+ + + LG
Sbjct: 689 PVEIMYTKQPEADYLDAALMTVMQIHL-SEGPGDILVFLTGQEEIDTSCEILYERSKMLG 747
Query: 399 PEVGELKCIPLYSTLPPNLQQRIFEPPPPKKANGAIGRKVVVSTNIAETSLTIDGVVFVI 578
+ EL +P+YS LP +Q RIFEP PP GRKVV++TNIAETSLTIDG+ +V+
Sbjct: 748 DSIPELVILPVYSALPSEIQSRIFEPAPPG------GRKVVIATNIAETSLTIDGIYYVV 801
Query: 579 DPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLYTEKGYNNEMHEN 758
DPGF KQ F+P++ ++SL+VTPIS+A T PGKC+RLYTE Y NEM +
Sbjct: 802 DPGFVKQSCFDPKLGMDSLIVTPISQAQARQRSGRAGRTGPGKCYRLYTESAYRNEMLPS 861
Query: 759 TYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDD 923
PEI R NL +L LK +GI+DL++FDFMDPP +T++ AL+ L L+ALDD+
Sbjct: 862 PIPEIQRQNLSHTILMLKAMGINDLLNFDFMDPPPAQTMIAALQNLYALSALDDE 916
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,483,495
Number of Sequences: 369166
Number of extensions: 2349452
Number of successful extensions: 7818
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7693
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9462723610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)