Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_I23
(252 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24361|VF09_VACCV Protein F9 32 0.59
sp|P68453|VF09_VACCP Protein F9 >gi|55977546|sp|P68452|VF09... 32 0.59
sp|P33869|VF09_VARV Protein F9 31 1.0
sp|P09152|NARG_ECOLI Respiratory nitrate reductase 1 alpha ... 30 1.3
sp|P07770|BENB_ACIAD Benzoate 1,2-dioxygenase beta subunit 29 3.8
sp|P34011|ATI1_VARV 81 kDa A-type inclusion protein (ATI) 28 5.0
>sp|P24361|VF09_VACCV Protein F9
Length = 212
Score = 31.6 bits (70), Expect = 0.59
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 201 VPNKNVLFVFWIVQWRKPIYSNWFLIGWAMINPITNRFNIPLCCFR 64
V + N ++V I++ R P Y WFL+G A+I I F + +C R
Sbjct: 155 VKSLNKIYVPPIIENRLPYYDPWFLVGVAIILVI---FTVAICSIR 197
>sp|P68453|VF09_VACCP Protein F9
sp|P68452|VF09_VACCC Protein F9
Length = 212
Score = 31.6 bits (70), Expect = 0.59
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 201 VPNKNVLFVFWIVQWRKPIYSNWFLIGWAMINPITNRFNIPLCCFR 64
V + N ++V I++ R P Y WFL+G A+I I F + +C R
Sbjct: 155 VKSLNKIYVPPIIENRLPYYDPWFLVGVAIILVI---FTVAICSIR 197
>sp|P33869|VF09_VARV Protein F9
Length = 212
Score = 30.8 bits (68), Expect = 1.0
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 189 NVLFVFWIVQWRKPIYSNWFLIGWAMINPITNRFNIPLCCFR 64
N ++V I++ R P Y WFL+G A+I I F + +C R
Sbjct: 159 NKIYVPPIIENRLPYYDPWFLVGVAIILVI---FTVAICSIR 197
>sp|P09152|NARG_ECOLI Respiratory nitrate reductase 1 alpha chain (Nitrate reductase A
alpha subunit) (Quinol-nitrate oxidoreductase alpha
subunit)
Length = 1247
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 46 NNVTRKPEATKGNIEPVSYGIYHSPSYEEPVRINRFPPLHDPKHK*NIFIWYSNRL 213
N +T EA K + PV Y + E +R P + H N+FIW SN L
Sbjct: 665 NPLTIAGEAEKAGMNPVDYTV--KSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLL 718
>sp|P07770|BENB_ACIAD Benzoate 1,2-dioxygenase beta subunit
Length = 169
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Frame = -1
Query: 102 ITNRFNIPLCCFRF---------SSYIIDFSKYRPIVLGKYL 4
IT RFN FR+ S Y+IDFS +P +L KY+
Sbjct: 112 ITVRFNWNTLSFRYKNSYSYFGMSRYVIDFSGEQPKILSKYV 153
>sp|P34011|ATI1_VARV 81 kDa A-type inclusion protein (ATI)
Length = 702
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 46 NNVTRKPEATKGNIEPVSYGIYHSPSYEEPVRINRFPPLHDPKH 177
N +P AT G+ E + H P+ ++ I + PL DP +
Sbjct: 343 NTGIEEPHATGGDKEDQPIKVVHPPNNDKDDAIKSYNPLEDPNY 386
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,088,786
Number of Sequences: 369166
Number of extensions: 625408
Number of successful extensions: 1554
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1554
length of database: 68,354,980
effective HSP length: 54
effective length of database: 58,379,290
effective search space used: 1692999410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)