Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_I13
(413 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O76485|CSK2B_SPOFR Casein kinase II beta subunit (CK II ... 182 2e-46
sp|P28021|CSK2B_XENLA Casein kinase II beta subunit (CK II ... 176 1e-44
sp|P67870|CSK2B_HUMAN Casein kinase II beta subunit (CK II ... 176 1e-44
sp|P08182|CSK2B_DROME Casein kinase II beta subunit (CK II ... 176 2e-44
sp|Q91398|CSK2B_BRARE Casein kinase II beta subunit (CK II ... 174 5e-44
sp|P28548|CSK2B_CAEEL Casein kinase II beta subunit (CK II ... 142 3e-34
sp|O96863|CSK2C_DROME Casein kinase II beta' subunit (CK II... 124 1e-28
sp|P38930|CSK2C_YEAST Casein kinase II beta' subunit (CK II... 99 3e-21
sp|P40232|CSK2B_SCHPO Casein kinase II beta subunit (CK II ... 99 3e-21
sp|Q8TG11|CSK2C_NEUCR Casein kinase II beta 2 subunit (CK I... 96 3e-20
>sp|O76485|CSK2B_SPOFR Casein kinase II beta subunit (CK II beta)
Length = 221
Score = 182 bits (463), Expect = 2e-46
Identities = 82/100 (82%), Positives = 92/100 (92%), Gaps = 1/100 (1%)
Frame = +2
Query: 23 IGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPIN 202
+GLSDVPGEAMVKLYCP+C DVYTPKS+RHHHTDGAYFGTGFPHM+F++HPEYRPKRP +
Sbjct: 122 LGLSDVPGEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPEYRPKRPAS 181
Query: 203 QFVPKLYGFKIHPLAYQIQYQAAANCKMPPRN-AYGNGKR 319
QFVP+LYGFKIHPLAYQIQ QAAAN K P R+ +Y NGKR
Sbjct: 182 QFVPRLYGFKIHPLAYQIQQQAAANFKAPLRSLSYNNGKR 221
>sp|P28021|CSK2B_XENLA Casein kinase II beta subunit (CK II beta) (Phosvitin)
Length = 215
Score = 176 bits (447), Expect = 1e-44
Identities = 76/89 (85%), Positives = 84/89 (94%)
Frame = +2
Query: 23 IGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPIN 202
IGLSD+PGEAMVKLYCPKC DVYTPKS+RHHHTDGAYFGTGFPHMLF++HPEYRPKRP N
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181
Query: 203 QFVPKLYGFKIHPLAYQIQYQAAANCKMP 289
QFVP+LYGFKIHP+AYQ+Q QAA+N K P
Sbjct: 182 QFVPRLYGFKIHPMAYQLQLQAASNFKSP 210
>sp|P67870|CSK2B_HUMAN Casein kinase II beta subunit (CK II beta) (Phosvitin) (G5a)
sp|P67874|CSK2B_RAT Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67873|CSK2B_RABIT Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67872|CSK2B_PIG Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67871|CSK2B_MOUSE Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67869|CSK2B_CHICK Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67868|CSK2B_BOVIN Casein kinase II beta subunit (CK II beta) (Phosvitin)
Length = 215
Score = 176 bits (447), Expect = 1e-44
Identities = 76/89 (85%), Positives = 84/89 (94%)
Frame = +2
Query: 23 IGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPIN 202
IGLSD+PGEAMVKLYCPKC DVYTPKS+RHHHTDGAYFGTGFPHMLF++HPEYRPKRP N
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181
Query: 203 QFVPKLYGFKIHPLAYQIQYQAAANCKMP 289
QFVP+LYGFKIHP+AYQ+Q QAA+N K P
Sbjct: 182 QFVPRLYGFKIHPMAYQLQLQAASNFKSP 210
>sp|P08182|CSK2B_DROME Casein kinase II beta subunit (CK II beta)
Length = 235
Score = 176 bits (445), Expect = 2e-44
Identities = 79/95 (83%), Positives = 85/95 (89%)
Frame = +2
Query: 23 IGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPIN 202
+GLSD+PGEAMVK YCPKC DVYTPKS+RHHHTDGAYFGTGFPHMLF++HPEYRPKRP N
Sbjct: 122 LGLSDIPGEAMVKTYCPKCIDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPTN 181
Query: 203 QFVPKLYGFKIHPLAYQIQYQAAANCKMPPRNAYG 307
QFVP+LYGFKIH LAYQIQ QAAAN KMP R G
Sbjct: 182 QFVPRLYGFKIHSLAYQIQLQAAANFKMPLRAQRG 216
>sp|Q91398|CSK2B_BRARE Casein kinase II beta subunit (CK II beta)
Length = 215
Score = 174 bits (442), Expect = 5e-44
Identities = 75/89 (84%), Positives = 84/89 (94%)
Frame = +2
Query: 23 IGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPIN 202
IGLSD+PGEAMVKLYCPKC DVYTPKS+RHHHTDGAYFGTGFPHMLF++HPEYRPKRP N
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181
Query: 203 QFVPKLYGFKIHPLAYQIQYQAAANCKMP 289
QFVP+LYGFKIHP+AYQ+Q QAA++ K P
Sbjct: 182 QFVPRLYGFKIHPMAYQLQLQAASSFKSP 210
>sp|P28548|CSK2B_CAEEL Casein kinase II beta subunit (CK II beta)
Length = 234
Score = 142 bits (357), Expect = 3e-34
Identities = 59/76 (77%), Positives = 69/76 (90%)
Frame = +2
Query: 23 IGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPIN 202
IGLSDVPGEAMVKLYCP+C V+ P+S+RH HTDG+YFGTGFPHMLF +HP+ RP+RP+
Sbjct: 121 IGLSDVPGEAMVKLYCPRCNMVFVPRSSRHQHTDGSYFGTGFPHMLFFVHPDLRPRRPVT 180
Query: 203 QFVPKLYGFKIHPLAY 250
QFVPKLYGFKIHP+AY
Sbjct: 181 QFVPKLYGFKIHPVAY 196
>sp|O96863|CSK2C_DROME Casein kinase II beta' subunit (CK II beta')
Length = 219
Score = 124 bits (310), Expect = 1e-28
Identities = 54/90 (60%), Positives = 67/90 (74%)
Frame = +2
Query: 23 IGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPIN 202
IGLSD PGE MV++YCPKC DVY PK++RH + DGA+FGTGFPHM F+ P+ RPKR
Sbjct: 120 IGLSDNPGEDMVRIYCPKCNDVYIPKASRHSNLDGAFFGTGFPHMFFMEKPDARPKRAKQ 179
Query: 203 QFVPKLYGFKIHPLAYQIQYQAAANCKMPP 292
+FVP+LYGFKIHP AY+ + + M P
Sbjct: 180 KFVPRLYGFKIHPTAYRTAAEIQKDVTMTP 209
>sp|P38930|CSK2C_YEAST Casein kinase II beta' subunit (CK II beta')
Length = 258
Score = 99.4 bits (246), Expect = 3e-21
Identities = 42/88 (47%), Positives = 57/88 (64%)
Frame = +2
Query: 23 IGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPIN 202
+GL D+PG VKLYCP C+D+Y PKS+RH DGAYFGT FP M P+ PK P
Sbjct: 152 VGLHDIPGIDCVKLYCPSCEDLYIPKSSRHSSIDGAYFGTSFPGMFLQAFPDMVPKHPTK 211
Query: 203 QFVPKLYGFKIHPLAYQIQYQAAANCKM 286
++VPK++GF++H A ++Q K+
Sbjct: 212 RYVPKIFGFELHKQAQLTRWQELQRLKL 239
>sp|P40232|CSK2B_SCHPO Casein kinase II beta subunit (CK II beta)
Length = 231
Score = 99.4 bits (246), Expect = 3e-21
Identities = 40/72 (55%), Positives = 54/72 (75%)
Frame = +2
Query: 23 IGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPIN 202
+GLSD+ VKLYCP+C+DVYTPKS RH DGAYFGT FPHMLF ++PE +
Sbjct: 126 VGLSDIAHTKSVKLYCPRCEDVYTPKSQRHASIDGAYFGTSFPHMLFQVYPELAVPKSQE 185
Query: 203 QFVPKLYGFKIH 238
+++P+++GFK+H
Sbjct: 186 RYIPRIFGFKVH 197
>sp|Q8TG11|CSK2C_NEUCR Casein kinase II beta 2 subunit (CK II beta 2)
Length = 285
Score = 95.9 bits (237), Expect = 3e-20
Identities = 40/91 (43%), Positives = 61/91 (67%)
Frame = +2
Query: 23 IGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPIN 202
+GLSDVP VKLYC +C+D+Y PKS+RH DGAYFGT F ++ F ++P P + +
Sbjct: 126 MGLSDVPNSKPVKLYCARCEDIYNPKSSRHAAIDGAYFGTSFHNIFFQVYPTLVPAKSVE 185
Query: 203 QFVPKLYGFKIHPLAYQIQYQAAANCKMPPR 295
+++P+ YGFK+H A +++Q + +M R
Sbjct: 186 RYIPRCYGFKVHAAAALVRWQNSQRDEMRRR 216
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,835,914
Number of Sequences: 369166
Number of extensions: 1008825
Number of successful extensions: 2140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2127
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)