Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_I10
(605 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O43920|NIPM_HUMAN NADH-ubiquinone oxidoreductase 15 kDa ... 40 0.004
sp|Q02379|NIPM_BOVIN NADH-ubiquinone oxidoreductase 15 kDa ... 40 0.005
sp|Q99LY9|NIPM_MOUSE NADH-ubiquinone oxidoreductase 15 kDa ... 34 0.25
sp|Q923Y0|TAA8C_RAT Trace amine-associated receptor 8c (Tra... 30 6.2
sp|Q5QD06|TAA8B_MOUSE Trace amine-associated receptor 8b 30 6.2
sp|Q6ME80|KSGA_PARUW Dimethyladenosine transferase (S-adeno... 30 6.2
sp|P33396|AG2R_MELGA Type-1 angiotensin II receptor (AT1) 29 8.1
sp|P79785|AG2R_CHICK Type-1 angiotensin II receptor (AT1) 29 8.1
sp|Q923X9|TAA8A_RAT Trace amine-associated receptor 8a (Tra... 29 8.1
>sp|O43920|NIPM_HUMAN NADH-ubiquinone oxidoreductase 15 kDa subunit (Complex I-15 kDa)
(CI-15 kDa)
Length = 106
Score = 40.4 bits (93), Expect = 0.004
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = +2
Query: 233 VQGHFAMNLRSTGASYHTMQSSRWPI----HCQIMERDYYRCLARVGFQNEQKYCRIYRE 400
+Q F +N+ + T+QS P C E+++ C +G+ +K C+I +
Sbjct: 6 IQKRFGLNIDR----WLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEYD 61
Query: 401 DVYECSFQEKAKRRRMYMTRMAMEKKAKSIEEPPKH 508
D EC ++K RR + + + + PP H
Sbjct: 62 DFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPH 97
>sp|Q02379|NIPM_BOVIN NADH-ubiquinone oxidoreductase 15 kDa subunit (Complex I-15 kDa)
(CI-15 kDa)
Length = 106
Score = 40.0 bits (92), Expect = 0.005
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = +2
Query: 227 FVVQGHFAMNLRSTGASYHTMQSSRWPIHCQIMERDYYRCLARVGFQNEQKYCRIYREDV 406
F VQ ++L Q + P C E+++ C +G +K C+I ED
Sbjct: 4 FDVQKRLGVDLDRWMTIQSAEQPHKIPSRCHAFEKEWIECAHGIGSIRAEKECKIEFEDF 63
Query: 407 YECSFQEKAKRRRMYMTRMAMEKKAKSIE-EPPKH 508
EC ++K +R++ R EK K + PP H
Sbjct: 64 RECLLRQKT-MKRLHAIRRQREKLIKEGKYTPPPH 97
>sp|Q99LY9|NIPM_MOUSE NADH-ubiquinone oxidoreductase 15 kDa subunit (Complex I-15 kDa)
(CI-15 kDa)
Length = 106
Score = 34.3 bits (77), Expect = 0.25
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 314 CQIMERDYYRCLARVGFQNEQKYCRIYREDVYECSFQEKAKRRRMYMTRMAMEKKAKSIE 493
C E+++ C +G +K C+I +D EC + K RRM+ + EK K +
Sbjct: 33 CHAFEKEWIECAHGIGGTRAKKECKIEFDDFEECLLRYKT-MRRMHDIKKQREKLMKEGK 91
Query: 494 -EPPKH 508
PP H
Sbjct: 92 YTPPPH 97
>sp|Q923Y0|TAA8C_RAT Trace amine-associated receptor 8c (Trace amine receptor 10)
(TaR-10)
Length = 344
Score = 29.6 bits (65), Expect = 6.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 229 CCSRSFCYESSEYGCIVSYDAKFPMADSL 315
CC +FCY S+ + C +S D + D L
Sbjct: 109 CCDVAFCYSSALHLCFISVDRYIAVTDPL 137
>sp|Q5QD06|TAA8B_MOUSE Trace amine-associated receptor 8b
Length = 344
Score = 29.6 bits (65), Expect = 6.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 229 CCSRSFCYESSEYGCIVSYDAKFPMADSL 315
CC +FCY S+ + C +S D + D L
Sbjct: 109 CCDVAFCYSSALHLCFISVDRYIAVTDPL 137
>sp|Q6ME80|KSGA_PARUW Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase)
Length = 284
Score = 29.6 bits (65), Expect = 6.2
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 311 HCQIMERDYYRCLARVGFQNEQKYCRIYREDVYECSFQEKAKRRRMYMTRMAMEKKAKSI 490
H +E+D+ FQ K I+ ED+ S +E+ + +R+ ++KAK I
Sbjct: 70 HVVAVEKDFVLARELKRFQTPSKQLEIFCEDILMFSVEEELQ------SRLRDDQKAKVI 123
Query: 491 EEPPKHL 511
P HL
Sbjct: 124 ANLPYHL 130
>sp|P33396|AG2R_MELGA Type-1 angiotensin II receptor (AT1)
Length = 359
Score = 29.3 bits (64), Expect = 8.1
Identities = 21/70 (30%), Positives = 28/70 (40%)
Frame = -1
Query: 536 NISIFHSIKDVLEALLCSWPFSPLPSESCTFCDVLLFLEKNTHKHLHDKFDNIFVHFEIL 357
N IF I ++ SW +P + TF DVL+ L T + D D +
Sbjct: 235 NDDIFKMIVAIVFFFFFSW----IPHQVFTFLDVLIQLHVITDCKITDIVDTAMPFTICI 290
Query: 356 LSLNTCNNPF 327
N C NPF
Sbjct: 291 AYFNNCLNPF 300
>sp|P79785|AG2R_CHICK Type-1 angiotensin II receptor (AT1)
Length = 359
Score = 29.3 bits (64), Expect = 8.1
Identities = 21/70 (30%), Positives = 28/70 (40%)
Frame = -1
Query: 536 NISIFHSIKDVLEALLCSWPFSPLPSESCTFCDVLLFLEKNTHKHLHDKFDNIFVHFEIL 357
N IF I ++ SW +P + TF DVL+ L T + D D +
Sbjct: 235 NDDIFKMIVAIVFFFFFSW----IPHQVFTFLDVLIQLHVITDCKITDIVDTAMPFTICI 290
Query: 356 LSLNTCNNPF 327
N C NPF
Sbjct: 291 AYFNNCLNPF 300
>sp|Q923X9|TAA8A_RAT Trace amine-associated receptor 8a (Trace amine receptor 11)
(TaR-11)
Length = 344
Score = 29.3 bits (64), Expect = 8.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 229 CCSRSFCYESSEYGCIVSYDAKFPMADSL 315
CC +FCY S + C +S D + D L
Sbjct: 109 CCDAAFCYSSLFHLCFISVDRYIAVTDPL 137
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,645,324
Number of Sequences: 369166
Number of extensions: 1379681
Number of successful extensions: 3774
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3773
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4699949280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)