Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_I01
(528 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P14202|TEGU_SCHMA Tegument antigen (I(H)A) (Antigen SmA2... 80 4e-15
sp|P32070|SM21_SCHMA Antigen Sm21.7 66 5e-11
sp|Q07167|SM16_SCHMA 16 kDa calcium-binding protein (Egg an... 40 0.005
sp|Q9UR05|DYL1_SCHPO Dynein light chain 1, cytoplasmic 39 0.010
sp|Q94748|DYL2_SCHMA Probable dynein light chain (T-cell-st... 38 0.013
sp|O94111|DYL1_EMENI Dynein light chain, cytoplasmic (8 kDa... 38 0.017
sp|P02589|TNNC2_RANES Troponin C, skeletal muscle 37 0.038
sp|O97341|CALM_SUBDO Calmodulin (CaM) 37 0.038
sp|Q7DMP0|CALM2_SOLTU Calmodulin-2/4 (CaM-2/4) 36 0.050
sp|Q7DMN9|CALM5_SOLTU Calmodulin-5/6/7/8 (CaM-5/6/7/8) 36 0.050
>sp|P14202|TEGU_SCHMA Tegument antigen (I(H)A) (Antigen SmA22.6) (A12)
Length = 190
Score = 79.7 bits (195), Expect = 4e-15
Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Frame = +1
Query: 1 IELFYEIDATLNDEISYTELQNYMKKRGYTDKDVDRWMQNFDENKDGKITLDEFIGKLDV 180
I F EIDA N+ I EL Y +K K +D W+ FD +KD KI+++EF +
Sbjct: 14 IRAFLEIDADSNEMIDKQELIKYCQKYRLDMKLIDPWIARFDTDKDNKISIEEFCRGFGL 73
Query: 181 ANDFYERPK------------VLDDDIEMINGGNTPFQRQYI-------MTNIVKRGNRL 303
R K L +IE+I + ++ I + N + GN +
Sbjct: 74 KVSEIRREKDELKKERDGKFPKLPPNIEIIAATMSKTKQYEICCQFKEYVDNTSRTGNDM 133
Query: 304 HKDNKKEEAKFIKNKLDDQLDKLWHCLIVKGQYWAFYSHEPENSLVFKFKNAVYILFRTP 483
+E A +K+ LD+ ++W +++ G YW +SHEP S+ FK+ N V + +RTP
Sbjct: 134 -----REVANKMKSLLDNTYGRVWQVVLLTGSYWMNFSHEPFLSIQFKYNNYVCLAWRTP 188
Query: 484 S 486
S
Sbjct: 189 S 189
>sp|P32070|SM21_SCHMA Antigen Sm21.7
Length = 184
Score = 66.2 bits (160), Expect = 5e-11
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 14/165 (8%)
Frame = +1
Query: 34 NDEISYTELQNYMKKRGYTDKDVDRWMQNFDENKDGKITLDEFIGKLDVANDFYE----- 198
++ + ++L +K K V+ W+ FD +KD KIT +EF L + +
Sbjct: 20 DETVETSKLSESCRKEKLDMKQVNEWIALFDVDKDQKITFEEFCRGLGLKQNEMRIERNH 79
Query: 199 -------RPKVLDDDIEMINGGNTPFQRQYIMTNIVKR-GNRLHKD-NKKEEAKFIKNKL 351
R + L + + +I P +Q +T + K N + KD + + K K++L
Sbjct: 80 IKTVQSGREQSLPEGVSII-ASTMPKPKQVEVTQLFKDIYNEVKKDPDMNKVVKTFKSEL 138
Query: 352 DDQLDKLWHCLIVKGQYWAFYSHEPENSLVFKFKNAVYILFRTPS 486
+ + ++W V YWA +SHEP S+ F++ N + + +RTPS
Sbjct: 139 ERRYGRVWQVNAVTHSYWASFSHEPFQSIQFQYDNKIILAWRTPS 183
>sp|Q07167|SM16_SCHMA 16 kDa calcium-binding protein (Egg antigen SME16)
Length = 143
Score = 39.7 bits (91), Expect = 0.005
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = +1
Query: 4 ELFYEIDATLNDEISYTELQNYMKKRGYTDKDVDR-----WMQNFDENKDGKITLDEFI 165
E+F ID + ++S EL ++K G D+D+ WM D+NKDG++ DEF+
Sbjct: 80 EVFQSIDKDGSGKVSIKELDEFLKTSGM---DIDQNSLRNWMTQNDKNKDGELDYDEFL 135
Score = 37.7 bits (86), Expect = 0.017
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +1
Query: 4 ELFYEIDATLNDEISYTELQNYMKKRGYTDKDVDRWMQNFDENKDGKITLDEFIGKL 174
E+F+ ID N ++ E+ +K+ G D+ ++ D N DGKI+L+E++ L
Sbjct: 9 EVFHAIDKDKNGFLTREEIAQCLKEVGVCPNVADKIIKETDMNSDGKISLEEYLNAL 65
>sp|Q9UR05|DYL1_SCHPO Dynein light chain 1, cytoplasmic
Length = 85
Score = 38.5 bits (88), Expect = 0.010
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +1
Query: 316 KKEEAKFIKNKLDDQLDKLWHCLIVKGQYWAFYSHEPENSLVFKFKNAVYILFRT 480
+K+ A FIK + D + WHC IV + +F +HE + + F ++LF++
Sbjct: 31 EKDIAAFIKREFDKKFSPTWHC-IVGRNFGSFVTHESRHFIYFYLGTVAFLLFKS 84
>sp|Q94748|DYL2_SCHMA Probable dynein light chain (T-cell-stimulating antigen SM10)
Length = 89
Score = 38.1 bits (87), Expect = 0.013
Identities = 14/55 (25%), Positives = 34/55 (61%)
Frame = +1
Query: 316 KKEEAKFIKNKLDDQLDKLWHCLIVKGQYWAFYSHEPENSLVFKFKNAVYILFRT 480
+K+ A +IK + D + + WHC++ K + ++ +HE ++ + F + ++LF++
Sbjct: 35 EKDVAAYIKKEFDRKYNPNWHCIVGK-HFGSYVTHETQHFIYFYLQERAFLLFKS 88
>sp|O94111|DYL1_EMENI Dynein light chain, cytoplasmic (8 kDa cytoplasmic dynein light
chain)
Length = 94
Score = 37.7 bits (86), Expect = 0.017
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = +1
Query: 316 KKEEAKFIKNKLDDQLDKLWHCLIVKGQYWAFYSHEPENSLVFKFKNAVYILFRT 480
+K+ A++IK + D + WHC +V + +F +HE ++ + F + +LF+T
Sbjct: 40 EKDIAQYIKREFDSRKGATWHC-VVGRNFGSFVTHETKHFIYFYLGHCAILLFKT 93
>sp|P02589|TNNC2_RANES Troponin C, skeletal muscle
Length = 162
Score = 36.6 bits (83), Expect = 0.038
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 4 ELFYEIDATLNDEISYTELQNYMKKRG--YTDKDVDRWMQNFDENKDGKITLDEFIGKLD 177
E F D + I EL ++ G TD++++ M++ D+N DGKI DEF+ ++
Sbjct: 100 ECFRIFDKNADGYIDSEELGEILRSSGESITDEEIEELMKDGDKNNDGKIDFDEFLKMME 159
>sp|O97341|CALM_SUBDO Calmodulin (CaM)
Length = 149
Score = 36.6 bits (83), Expect = 0.038
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 4 ELFYEIDATLNDEISYTELQNYMKKRG--YTDKDVDRWMQNFDENKDGKITLDEFIGKL 174
E F D N IS EL++ M G TD++VD ++ D + DG++ +EF+G +
Sbjct: 88 EAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADTDGDGQVNYEEFVGMM 146
>sp|Q7DMP0|CALM2_SOLTU Calmodulin-2/4 (CaM-2/4)
Length = 124
Score = 36.2 bits (82), Expect = 0.050
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 4 ELFYEIDATLNDEISYTELQNYMKKRG--YTDKDVDRWMQNFDENKDGKITLDEFI 165
E F D N IS EL++ M G TD++VD ++ D + DG+I DEF+
Sbjct: 63 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFV 118
>sp|Q7DMN9|CALM5_SOLTU Calmodulin-5/6/7/8 (CaM-5/6/7/8)
Length = 149
Score = 36.2 bits (82), Expect = 0.050
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 4 ELFYEIDATLNDEISYTELQNYMKKRG--YTDKDVDRWMQNFDENKDGKITLDEFI 165
E F D N IS EL++ M G TD++VD ++ D + DG+I DEF+
Sbjct: 88 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFV 143
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,270,279
Number of Sequences: 369166
Number of extensions: 1108140
Number of successful extensions: 3754
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3738
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3551563800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)