Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_H24
(887 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VNV3|DDX1_DROME ATP-dependent helicase DDX1 (DEAD-box ... 315 1e-85
sp|Q92499|DDX1_HUMAN ATP-dependent helicase DDX1 (DEAD-box ... 300 4e-81
sp|Q641Y8|DDX1_RAT ATP-dependent helicase DDX1 (DEAD-box pr... 298 1e-80
sp|Q91VR5|DDX1_MOUSE ATP-dependent helicase DDX1 (DEAD-box ... 296 5e-80
sp|Q00839|HNRPU_HUMAN Heterogenous nuclear ribonucleoprotei... 73 1e-12
sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase D... 66 1e-10
sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase D... 66 1e-10
sp|Q9NY93|DDX56_HUMAN Probable ATP-dependent 61 kDa nucleol... 61 4e-09
sp|Q9D0R4|DDX56_MOUSE Probable ATP-dependent 61 kDa nucleol... 60 8e-09
sp|Q09916|YAK2_SCHPO Putative ATP-dependent RNA helicase C1... 58 4e-08
>sp|Q9VNV3|DDX1_DROME ATP-dependent helicase DDX1 (DEAD-box protein 1)
Length = 727
Score = 315 bits (806), Expect = 1e-85
Identities = 158/294 (53%), Positives = 201/294 (68%), Gaps = 8/294 (2%)
Frame = +2
Query: 2 GVLPEIAKAVDEMEWSLPTDIQSDAIPLILGGGDVLMAAETGSGKTGAFCLPVLQIVYES 181
GVLPE+ A DE++W+LPTD+Q++AIPLILGGGDVLMAAETGSGKTGAFCLP+LQIV+E+
Sbjct: 8 GVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWET 67
Query: 182 LKNCN------GTKITVANNFWKMNAYDRTSSMAIDAEGTLCQSRDQGGWHGCRANKAVK 343
L++ G I A W M+ +DR +++A+ +G CQSR+ WHGCRA V+
Sbjct: 68 LRDLEEGKAGKGGAIGGAVTPWTMSFFDRGNALAVTPDGLRCQSREFKEWHGCRATTGVR 127
Query: 344 GPGKYYFEALVTDDGLCRVGWSTNSASLELGTCPNGFGFGGTGKKSNNKKFDSYGESFAN 523
G GK+YFEA VTD+GLCRVGWST A+L+LGTC GFGFGGTGKKSNN++FD YGE+F
Sbjct: 128 GKGKFYFEATVTDEGLCRVGWSTQQANLDLGTCRMGFGFGGTGKKSNNRQFDDYGEAFGK 187
Query: 524 GDKIGNCIDFERNEIRWYKNDIDLGVAYQIPKSMLREEFFPSVCLKNAEMRFNFGKTRVN 703
D IG +D + E+ + KN +LGVA+++P ++ +E F+P+V LKNAEM+FNFGKT
Sbjct: 188 ADVIGCLLDLKNQEVSFTKNGQNLGVAFRLPDNLAKETFYPAVVLKNAEMQFNFGKTDFK 247
Query: 704 NVP-KGFT-IVQEAPNECVVXXXXXXXXXXXXXXXXXXXPLAIIIEPSRELAEQ 859
P GF Q P P AII+EPSRELAEQ
Sbjct: 248 YAPGNGFVGACQAGPEHSKANPITGPAAGAPSAKPAPNAPQAIIMEPSRELAEQ 301
>sp|Q92499|DDX1_HUMAN ATP-dependent helicase DDX1 (DEAD-box protein 1) (DEAD-box
protein-retinoblastoma) (DBP-RB)
Length = 740
Score = 300 bits (768), Expect = 4e-81
Identities = 156/295 (52%), Positives = 200/295 (67%), Gaps = 9/295 (3%)
Frame = +2
Query: 2 GVLPEIAKAVDEMEWSLPTDIQSDAIPLILGGGDVLMAAETGSGKTGAFCLPVLQIVYES 181
GV+PEIA+AV+EM+W LPTDIQ+++IPLILGGGDVLMAAETGSGKTGAF +PV+QIVYE+
Sbjct: 8 GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYET 67
Query: 182 LKNCNGTK---ITVAN-----NFWKMNAYDRTSSMAIDAEGTLCQSRDQGGWHGCRANKA 337
LK+ K T+ N W+MN YDR S+ AI ++G CQSR+ WHGCRA K
Sbjct: 68 LKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKG 127
Query: 338 VKGPGKYYFEALVTDDGLCRVGWSTNSASLELGTCPNGFGFGGTGKKSNNKKFDSYGESF 517
+ GK+Y+E D GLCRVGWST ASL+LGT GFGFGGTGKKS+NK+FD+YGE F
Sbjct: 128 LM-KGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEF 186
Query: 518 ANGDKIGNCIDFERNEIRWYKNDIDLGVAYQIPKSMLREEFFPSVCLKNAEMRFNFGKTR 697
D IG +D ++ +++ KN DLG+A++IP M + FP+ LKNAE++FNFG+
Sbjct: 187 TMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEE 246
Query: 698 VNNVPK-GFTIVQEAPNECVVXXXXXXXXXXXXXXXXXXXPLAIIIEPSRELAEQ 859
PK GF + +AP+ +V P A+I+EPSRELAEQ
Sbjct: 247 FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQ 301
>sp|Q641Y8|DDX1_RAT ATP-dependent helicase DDX1 (DEAD-box protein 1)
Length = 740
Score = 298 bits (764), Expect = 1e-80
Identities = 155/295 (52%), Positives = 199/295 (67%), Gaps = 9/295 (3%)
Frame = +2
Query: 2 GVLPEIAKAVDEMEWSLPTDIQSDAIPLILGGGDVLMAAETGSGKTGAFCLPVLQIVYES 181
GV+PEIA+AV+EM+W LPTDIQ+++IPLILGGGDVLMAAETGSGKTGAF +PV+QIVYE+
Sbjct: 8 GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYET 67
Query: 182 LKNCNGTKITVAN--------NFWKMNAYDRTSSMAIDAEGTLCQSRDQGGWHGCRANKA 337
LK+ K A N W+MN YDR S+ AI ++G CQSR+ WHGCRA +
Sbjct: 68 LKDQQEGKKGKATIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATRG 127
Query: 338 VKGPGKYYFEALVTDDGLCRVGWSTNSASLELGTCPNGFGFGGTGKKSNNKKFDSYGESF 517
+ GK+Y+E D GLCRVGWST ASL+LGT GFGFGGTGKKS+NK+FD+YGE F
Sbjct: 128 LLR-GKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEF 186
Query: 518 ANGDKIGNCIDFERNEIRWYKNDIDLGVAYQIPKSMLREEFFPSVCLKNAEMRFNFGKTR 697
D IG +D ++ +++ KN DLG+A++IP + + FP+ LKNAE++FNFG+
Sbjct: 187 TMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAELKFNFGEEE 246
Query: 698 VNNVPK-GFTIVQEAPNECVVXXXXXXXXXXXXXXXXXXXPLAIIIEPSRELAEQ 859
PK GF + +AP+ VV P A+I+EPSRELAEQ
Sbjct: 247 FKFPPKDGFVALSKAPDSYVVKSQHTGNAQVSQTKFLPNAPKALIVEPSRELAEQ 301
>sp|Q91VR5|DDX1_MOUSE ATP-dependent helicase DDX1 (DEAD-box protein 1)
Length = 740
Score = 296 bits (758), Expect = 5e-80
Identities = 153/295 (51%), Positives = 199/295 (67%), Gaps = 9/295 (3%)
Frame = +2
Query: 2 GVLPEIAKAVDEMEWSLPTDIQSDAIPLILGGGDVLMAAETGSGKTGAFCLPVLQIVYES 181
GV+PEIA+AV+EM+W LPTDIQ+++IPLILGGGDVLMAAETGSGKTGAF +PV+QIVYE+
Sbjct: 8 GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYET 67
Query: 182 LKNCNGTK---ITVAN-----NFWKMNAYDRTSSMAIDAEGTLCQSRDQGGWHGCRANKA 337
LK+ K T+ N W+MN YDR S+ AI ++G CQSR+ WHGCR +
Sbjct: 68 LKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRGTRG 127
Query: 338 VKGPGKYYFEALVTDDGLCRVGWSTNSASLELGTCPNGFGFGGTGKKSNNKKFDSYGESF 517
+ GK+Y+E D GLCRVGWST ASL+LGT GFGFGGTGKKS+NK+FD+YGE F
Sbjct: 128 LL-KGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEF 186
Query: 518 ANGDKIGNCIDFERNEIRWYKNDIDLGVAYQIPKSMLREEFFPSVCLKNAEMRFNFGKTR 697
D IG +D ++ +++ KN DLG+A++IP + + FP+ LKNAE++FNFG+
Sbjct: 187 TMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAELKFNFGEEE 246
Query: 698 VNNVPK-GFTIVQEAPNECVVXXXXXXXXXXXXXXXXXXXPLAIIIEPSRELAEQ 859
PK GF + +AP+ +V P A+I+EPSRELAEQ
Sbjct: 247 FKFPPKDGFVALSKAPDNYIVKSQHTGNAQVSQTKFLPNAPKALIVEPSRELAEQ 301
>sp|Q00839|HNRPU_HUMAN Heterogenous nuclear ribonucleoprotein U (hnRNP U) (Scaffold
attachment factor A) (SAF-A) (pp120)
Length = 824
Score = 72.8 bits (177), Expect = 1e-12
Identities = 54/164 (32%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Frame = +2
Query: 311 WHGCRANKAVKGPGKYYFEALVT-------------DDGLCRVGWSTNSASLELGTCPNG 451
W G RA+ V GK FE VT D R+GWS ++ + LG
Sbjct: 319 WAGGRASYGVS-KGKVCFEMKVTEKIPVRHLYTKDIDIHEVRIGWSLTTSGMLLGEEEFS 377
Query: 452 FGFGGTGKKSNNKKFDSYGESFANGDKIGNCIDFERNEIR--WYKNDIDLGVAYQIPKSM 625
+G+ G K+ N + + YGE F D I +FE +E+ + KN DLGVA++I K +
Sbjct: 378 YGYSLKGIKTCNCETEDYGEKFDENDVITCFANFESDEVELSYAKNGQDLGVAFKISKEV 437
Query: 626 LR-EEFFPSVCLKNAEMRFNFGKTR--VNNVPKGFTIVQEAPNE 748
L FP V N + FNFG+ +P+ +T +Q P E
Sbjct: 438 LAGRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEEYTFIQNVPLE 481
>sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 (DEAD-box protein 47)
Length = 455
Score = 66.2 bits (160), Expect = 1e-10
Identities = 31/60 (51%), Positives = 42/60 (70%)
Frame = +2
Query: 2 GVLPEIAKAVDEMEWSLPTDIQSDAIPLILGGGDVLMAAETGSGKTGAFCLPVLQIVYES 181
GV + +A D++ W+ PT IQ +AIPL L G D++ AETGSGKTGAF LP+L + E+
Sbjct: 30 GVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET 89
>sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 (DEAD-box protein 47)
Length = 455
Score = 66.2 bits (160), Expect = 1e-10
Identities = 31/60 (51%), Positives = 42/60 (70%)
Frame = +2
Query: 2 GVLPEIAKAVDEMEWSLPTDIQSDAIPLILGGGDVLMAAETGSGKTGAFCLPVLQIVYES 181
GV + +A D++ W+ PT IQ +AIPL L G D++ AETGSGKTGAF LP+L + E+
Sbjct: 30 GVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET 89
>sp|Q9NY93|DDX56_HUMAN Probable ATP-dependent 61 kDa nucleolar RNA helicase (DEAD-box
protein 56) (DEAD-box protein 21)
Length = 547
Score = 61.2 bits (147), Expect = 4e-09
Identities = 29/57 (50%), Positives = 40/57 (70%)
Frame = +2
Query: 2 GVLPEIAKAVDEMEWSLPTDIQSDAIPLILGGGDVLMAAETGSGKTGAFCLPVLQIV 172
G+ P + +AV ++ WS PT IQ AIPL L G D+L A TGSGKT A+ +P+LQ++
Sbjct: 13 GLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLL 69
>sp|Q9D0R4|DDX56_MOUSE Probable ATP-dependent 61 kDa nucleolar RNA helicase (DEAD-box
protein 56)
Length = 546
Score = 60.1 bits (144), Expect = 8e-09
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +2
Query: 2 GVLPEIAKAVDEMEWSLPTDIQSDAIPLILGGGDVLMAAETGSGKTGAFCLPVLQ 166
G+ P + +AV ++ WS PT IQ AIPL L G D+L A TGSGKT A+ +P+LQ
Sbjct: 13 GLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQ 67
>sp|Q09916|YAK2_SCHPO Putative ATP-dependent RNA helicase C1F7.02c
Length = 578
Score = 57.8 bits (138), Expect = 4e-08
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Frame = +2
Query: 17 IAKAVDEMEWSLPTDIQSDAIPLILGGGDVLMAAETGSGKTGAFCLPVLQIVYE-SLKNC 193
I KA+ EM + T+IQ +IP +L G DVL AA+TGSGKT AF +P ++++Y K
Sbjct: 100 IQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPR 159
Query: 194 NGTKITV 214
NGT + +
Sbjct: 160 NGTGVII 166
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,359,829
Number of Sequences: 369166
Number of extensions: 2301566
Number of successful extensions: 7233
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7208
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)