Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_H17
(950 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 528 e-150
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 528 e-150
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 526 e-149
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 526 e-149
sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin cla... 524 e-148
sp|Q9NFZ6|TBB2_ECHMU Tubulin beta-2 chain (Beta-tubulin 2) 523 e-148
sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain 521 e-148
sp|P02554|TBB_PIG Tubulin beta chain 521 e-147
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 521 e-147
sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin cla... 521 e-147
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 528 bits (1361), Expect = e-150
Identities = 256/284 (90%), Positives = 264/284 (92%)
Frame = +3
Query: 36 NQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 215
NQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM
Sbjct: 14 NQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 73
Query: 216 DSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGF 395
DSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGF
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133
Query: 396 QXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLV 575
Q KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQLV
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLV 193
Query: 576 ENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 755
ENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL
Sbjct: 194 ENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 253
Query: 756 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAE 887
AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDA+
Sbjct: 254 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 297
Score = 48.1 bits (113), Expect = 4e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2
Query: 887 NMMAACDPRHGRYLTVAAIFR 949
NMMAACDPRHGRYLTVAAIFR
Sbjct: 298 NMMAACDPRHGRYLTVAAIFR 318
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 528 bits (1361), Expect = e-150
Identities = 256/284 (90%), Positives = 264/284 (92%)
Frame = +3
Query: 36 NQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 215
NQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM
Sbjct: 14 NQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 73
Query: 216 DSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGF 395
DSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGF
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133
Query: 396 QXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLV 575
Q KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQLV
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLV 193
Query: 576 ENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 755
ENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL
Sbjct: 194 ENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 253
Query: 756 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAE 887
AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDA+
Sbjct: 254 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 297
Score = 47.8 bits (112), Expect = 5e-05
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +2
Query: 887 NMMAACDPRHGRYLTVAAIFR 949
NMMAACDPRHGRYLTVAA+FR
Sbjct: 298 NMMAACDPRHGRYLTVAAVFR 318
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 526 bits (1356), Expect = e-149
Identities = 255/284 (89%), Positives = 263/284 (92%)
Frame = +3
Query: 36 NQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 215
NQIG+KFWEVISDEHGIDPTG YHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM
Sbjct: 14 NQIGAKFWEVISDEHGIDPTGAYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 73
Query: 216 DSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGF 395
DSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGF
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133
Query: 396 QXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLV 575
Q KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQLV
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLV 193
Query: 576 ENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 755
ENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL
Sbjct: 194 ENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 253
Query: 756 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAE 887
AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDA+
Sbjct: 254 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 297
Score = 48.1 bits (113), Expect = 4e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2
Query: 887 NMMAACDPRHGRYLTVAAIFR 949
NMMAACDPRHGRYLTVAAIFR
Sbjct: 298 NMMAACDPRHGRYLTVAAIFR 318
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 526 bits (1354), Expect = e-149
Identities = 253/284 (89%), Positives = 264/284 (92%)
Frame = +3
Query: 36 NQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 215
NQIG+KFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEATGGKYVPRA+LVDLEPGTM
Sbjct: 14 NQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTM 73
Query: 216 DSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGF 395
DSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGF
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133
Query: 396 QXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLV 575
Q KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQLV
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLV 193
Query: 576 ENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 755
ENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL
Sbjct: 194 ENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 253
Query: 756 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAE 887
AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDA+
Sbjct: 254 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 297
Score = 47.8 bits (112), Expect = 5e-05
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +2
Query: 887 NMMAACDPRHGRYLTVAAIFR 949
NMMAACDPRHGRYLTVAA+FR
Sbjct: 298 NMMAACDPRHGRYLTVAAVFR 318
>sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin class-IV)
Length = 445
Score = 524 bits (1350), Expect = e-148
Identities = 254/284 (89%), Positives = 263/284 (92%)
Frame = +3
Query: 36 NQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 215
NQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM
Sbjct: 14 NQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 73
Query: 216 DSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGF 395
DSVR+GPF QIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGF
Sbjct: 74 DSVRSGPFRQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133
Query: 396 QXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLV 575
Q KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQLV
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLV 193
Query: 576 ENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 755
ENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL
Sbjct: 194 ENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 253
Query: 756 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAE 887
AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVP+LTQQ+FDA+
Sbjct: 254 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPDLTQQMFDAK 297
Score = 43.9 bits (102), Expect = 7e-04
Identities = 24/68 (35%), Positives = 32/68 (47%)
Frame = +2
Query: 746 KKIGSKYGSFSKITLFYAGFCATY*SWKPTISSIDCSGTNATNF*R*NMMAACDPRHGRY 925
+K+ F ++ F GF ++ F NMMAAC+P HGRY
Sbjct: 251 RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPDLTQQMFDAKNMMAACEPGHGRY 310
Query: 926 LTVAAIFR 949
LTVAA+FR
Sbjct: 311 LTVAAVFR 318
>sp|Q9NFZ6|TBB2_ECHMU Tubulin beta-2 chain (Beta-tubulin 2)
Length = 445
Score = 523 bits (1346), Expect = e-148
Identities = 250/284 (88%), Positives = 264/284 (92%)
Frame = +3
Query: 36 NQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 215
NQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GGKYVPRA+LVDLEPGTM
Sbjct: 14 NQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTM 73
Query: 216 DSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGF 395
DSVRAGPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD++RKEAESCDCLQGF
Sbjct: 74 DSVRAGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVIRKEAESCDCLQGF 133
Query: 396 QXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLV 575
Q KIREEYPDR+M+T+SVVPSPKVSDTVVEPYNATLSVHQLV
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMVTYSVVPSPKVSDTVVEPYNATLSVHQLV 193
Query: 576 ENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 755
ENTDET+CIDNEALYDICFRTLKL+ PTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL
Sbjct: 194 ENTDETYCIDNEALYDICFRTLKLSNPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 253
Query: 756 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAE 887
AVNMVPFPRLHFFMPGFAPLTSRGSQQYRAL+VPELTQQ+FDA+
Sbjct: 254 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAK 297
Score = 48.5 bits (114), Expect = 3e-05
Identities = 27/68 (39%), Positives = 33/68 (48%)
Frame = +2
Query: 746 KKIGSKYGSFSKITLFYAGFCATY*SWKPTISSIDCSGTNATNF*R*NMMAACDPRHGRY 925
+K+ F ++ F GF ++ F NMMAACDPRHGRY
Sbjct: 251 RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAACDPRHGRY 310
Query: 926 LTVAAIFR 949
LTVAAIFR
Sbjct: 311 LTVAAIFR 318
>sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain
Length = 444
Score = 521 bits (1343), Expect = e-148
Identities = 252/284 (88%), Positives = 262/284 (92%)
Frame = +3
Query: 36 NQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 215
NQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGG YVPRAVLVDLEPGTM
Sbjct: 14 NQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTM 73
Query: 216 DSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGF 395
DSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD+VRKEAESCDCLQGF
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGF 133
Query: 396 QXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLV 575
Q KIREE+PDR+M TFSVVPSPKVSDTVVEPYNATLSVHQLV
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLV 193
Query: 576 ENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 755
ENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL
Sbjct: 194 ENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 253
Query: 756 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAE 887
AVNMVPFPRLHFFMPG APLTSRGSQQYRALTVPELTQQ+FDA+
Sbjct: 254 AVNMVPFPRLHFFMPGLAPLTSRGSQQYRALTVPELTQQMFDAK 297
Score = 47.8 bits (112), Expect = 5e-05
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +2
Query: 887 NMMAACDPRHGRYLTVAAIFR 949
NMMAACDPRHGRYLTVAA+FR
Sbjct: 298 NMMAACDPRHGRYLTVAAVFR 318
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 521 bits (1342), Expect = e-147
Identities = 251/284 (88%), Positives = 262/284 (92%)
Frame = +3
Query: 36 NQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 215
NQIG+KFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G KYVPRA+LVDLEPGTM
Sbjct: 14 NQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTM 73
Query: 216 DSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGF 395
DSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VRKE+ESCDCLQGF
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGF 133
Query: 396 QXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLV 575
Q KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQLV
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLV 193
Query: 576 ENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 755
ENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL
Sbjct: 194 ENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 253
Query: 756 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAE 887
AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDA+
Sbjct: 254 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 297
Score = 47.8 bits (112), Expect = 5e-05
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +2
Query: 887 NMMAACDPRHGRYLTVAAIFR 949
NMMAACDPRHGRYLTVAA+FR
Sbjct: 298 NMMAACDPRHGRYLTVAAVFR 318
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 521 bits (1342), Expect = e-147
Identities = 252/284 (88%), Positives = 263/284 (92%)
Frame = +3
Query: 36 NQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 215
NQIG+KFWEVISDEHGIDP+GTYHGD++LQLERINVYYNEATGGKYVPRAVLVDLEPGTM
Sbjct: 14 NQIGAKFWEVISDEHGIDPSGTYHGDNELQLERINVYYNEATGGKYVPRAVLVDLEPGTM 73
Query: 216 DSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGF 395
DSVR+G FGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGF
Sbjct: 74 DSVRSGAFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133
Query: 396 QXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLV 575
Q KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQLV
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLV 193
Query: 576 ENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 755
ENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL
Sbjct: 194 ENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 253
Query: 756 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAE 887
AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDA+
Sbjct: 254 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 297
Score = 48.1 bits (113), Expect = 4e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2
Query: 887 NMMAACDPRHGRYLTVAAIFR 949
NMMAACDPRHGRYLTVAAIFR
Sbjct: 298 NMMAACDPRHGRYLTVAAIFR 318
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin class-II)
Length = 445
Score = 521 bits (1341), Expect = e-147
Identities = 250/284 (88%), Positives = 263/284 (92%)
Frame = +3
Query: 36 NQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 215
NQIG+KFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEATG KYVPRA+LVDLEPGTM
Sbjct: 14 NQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTM 73
Query: 216 DSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGF 395
DSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VRKE+ESCDCLQGF
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGF 133
Query: 396 QXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLV 575
Q KIREEYPDR+M TFSV+PSPKVSDTVVEPYNATLSVHQLV
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLV 193
Query: 576 ENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 755
ENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL
Sbjct: 194 ENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 253
Query: 756 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAE 887
AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD++
Sbjct: 254 AVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSK 297
Score = 48.1 bits (113), Expect = 4e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2
Query: 887 NMMAACDPRHGRYLTVAAIFR 949
NMMAACDPRHGRYLTVAAIFR
Sbjct: 298 NMMAACDPRHGRYLTVAAIFR 318
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,366,050
Number of Sequences: 369166
Number of extensions: 2012540
Number of successful extensions: 6144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5583
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9895030780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)