Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_H06
(482 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q08094|CNN2_PIG Calponin-2 (Calponin H2, smooth muscle) ... 52 7e-07
sp|Q99439|CNN2_HUMAN Calponin-2 (Calponin H2, smooth muscle... 52 7e-07
sp|P37397|CNN3_RAT Calponin-3 (Calponin, acidic isoform) (C... 52 7e-07
sp|Q15417|CNN3_HUMAN Calponin-3 (Calponin, acidic isoform) 52 9e-07
sp|Q9DAW9|CNN3_MOUSE Calponin-3 (Calponin, acidic isoform) 52 9e-07
sp|Q08093|CNN2_MOUSE Calponin-2 (Calponin H2, smooth muscle... 51 2e-06
sp|P26932|CNN1_CHICK Calponin-1 (Calponin, smooth muscle) 48 1e-05
sp|Q08290|CNN1_RAT Calponin-1 (Calponin H1, smooth muscle) ... 42 7e-04
sp|Q08092|CNN1_PIG Calponin-1 (Calponin H1, smooth muscle) ... 42 7e-04
sp|P51911|CNN1_HUMAN Calponin-1 (Calponin H1, smooth muscle... 42 7e-04
>sp|Q08094|CNN2_PIG Calponin-2 (Calponin H2, smooth muscle) (Neutral calponin)
Length = 296
Score = 52.0 bits (123), Expect = 7e-07
Identities = 37/71 (52%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +2
Query: 26 SIISLQYGTNLGANQNGMRI-GTQRHITDISCGLEPNKNSSNFISLQMGPSMKEVANQSG 202
S ISLQ GTN A+Q GM GT+RHI D G + NSS +SLQMG + ANQSG
Sbjct: 204 STISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNSS--MSLQMG--YTQGANQSG 259
Query: 203 MSFGAQRHIND 235
FG R I D
Sbjct: 260 QVFGLGRQIYD 270
Score = 47.4 bits (111), Expect = 2e-05
Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = +2
Query: 14 KEAQSIISLQYGTNLGANQNGM-RIGTQRHITDISCGLEPNKNSSNFISLQMGPSMKEVA 190
K Q +I LQ GTN A+Q+GM GT+RH+ D + P + S ISLQMG + + A
Sbjct: 160 KAGQCVIGLQMGTNKCASQSGMTAYGTRRHLYDPKNHILPPMDHST-ISLQMGTN--KCA 216
Query: 191 NQSGMSF-GAQRHINDS 238
+Q GM+ G +RHI D+
Sbjct: 217 SQVGMTAPGTRRHIYDT 233
>sp|Q99439|CNN2_HUMAN Calponin-2 (Calponin H2, smooth muscle) (Neutral calponin)
Length = 309
Score = 52.0 bits (123), Expect = 7e-07
Identities = 37/71 (52%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +2
Query: 26 SIISLQYGTNLGANQNGMRI-GTQRHITDISCGLEPNKNSSNFISLQMGPSMKEVANQSG 202
S ISLQ GTN A+Q GM GT+RHI D G + NSS +SLQMG + ANQSG
Sbjct: 204 STISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNSS--MSLQMG--YTQGANQSG 259
Query: 203 MSFGAQRHIND 235
FG R I D
Sbjct: 260 QVFGLGRQIYD 270
Score = 47.4 bits (111), Expect = 2e-05
Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = +2
Query: 14 KEAQSIISLQYGTNLGANQNGM-RIGTQRHITDISCGLEPNKNSSNFISLQMGPSMKEVA 190
K Q +I LQ GTN A+Q+GM GT+RH+ D + P + S ISLQMG + + A
Sbjct: 160 KAGQCVIGLQMGTNKCASQSGMTAYGTRRHLYDPKNHILPPMDHST-ISLQMGTN--KCA 216
Query: 191 NQSGMSF-GAQRHINDS 238
+Q GM+ G +RHI D+
Sbjct: 217 SQVGMTAPGTRRHIYDT 233
>sp|P37397|CNN3_RAT Calponin-3 (Calponin, acidic isoform) (Calponin, non-muscle
isoform)
Length = 330
Score = 52.0 bits (123), Expect = 7e-07
Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Frame = +2
Query: 23 QSIISLQYGTNLGANQNGMRI-GTQRHITDISCGLEPNKNSSNFISLQMGPSMKEVANQS 199
Q+ ISLQ GTN GA+Q GM GT+R I D L+P NS+ ISLQMG + +VA+Q
Sbjct: 201 QTTISLQMGTNKGASQAGMSAPGTRRDIYDQKLTLQPVDNST--ISLQMGTN--KVASQK 256
Query: 200 GMS-FGAQRHIND 235
GMS +G R + D
Sbjct: 257 GMSVYGLGRQVYD 269
Score = 42.7 bits (99), Expect = 4e-04
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Frame = +2
Query: 14 KEAQSIISLQYGTNLGANQNGM-RIGTQRHITDISCGLEPNKNSSNFISLQMGPSMKEVA 190
K QS+I LQ GTN A+Q GM GT+RH+ D + + + ISLQMG + + A
Sbjct: 158 KAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQTDKPFDQTT-ISLQMGTN--KGA 214
Query: 191 NQSGMSF-GAQRHIND 235
+Q+GMS G +R I D
Sbjct: 215 SQAGMSAPGTRRDIYD 230
>sp|Q15417|CNN3_HUMAN Calponin-3 (Calponin, acidic isoform)
Length = 329
Score = 51.6 bits (122), Expect = 9e-07
Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Frame = +2
Query: 23 QSIISLQYGTNLGANQNGMRI-GTQRHITDISCGLEPNKNSSNFISLQMGPSMKEVANQS 199
Q+ ISLQ GTN GA+Q GM GT+R I D L+P NS+ ISLQMG + +VA+Q
Sbjct: 201 QTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNST--ISLQMGTN--KVASQK 256
Query: 200 GMS-FGAQRHIND 235
GMS +G R + D
Sbjct: 257 GMSVYGLGRQVYD 269
Score = 40.8 bits (94), Expect = 0.002
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Frame = +2
Query: 14 KEAQSIISLQYGTNLGANQNGM-RIGTQRHITDISCGLEPNKNSSNFISLQMGPSMKEVA 190
K QS+I LQ GTN A+Q GM GT+RH+ D + + + ISLQMG + + A
Sbjct: 158 KAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQTDKPFDQTT-ISLQMGTN--KGA 214
Query: 191 NQSGM-SFGAQRHIND 235
+Q+GM + G +R I D
Sbjct: 215 SQAGMLAPGTRRDIYD 230
>sp|Q9DAW9|CNN3_MOUSE Calponin-3 (Calponin, acidic isoform)
Length = 330
Score = 51.6 bits (122), Expect = 9e-07
Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Frame = +2
Query: 23 QSIISLQYGTNLGANQNGMRI-GTQRHITDISCGLEPNKNSSNFISLQMGPSMKEVANQS 199
Q+ ISLQ GTN GA+Q GM GT+R I D L+P NS+ ISLQMG + +VA+Q
Sbjct: 201 QTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNST--ISLQMGTN--KVASQK 256
Query: 200 GMS-FGAQRHIND 235
GMS +G R + D
Sbjct: 257 GMSVYGLGRQVYD 269
Score = 40.8 bits (94), Expect = 0.002
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Frame = +2
Query: 14 KEAQSIISLQYGTNLGANQNGM-RIGTQRHITDISCGLEPNKNSSNFISLQMGPSMKEVA 190
K QS+I LQ GTN A+Q GM GT+RH+ D + + + ISLQMG + + A
Sbjct: 158 KAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQTDKPFDQTT-ISLQMGTN--KGA 214
Query: 191 NQSGM-SFGAQRHIND 235
+Q+GM + G +R I D
Sbjct: 215 SQAGMLAPGTRRDIYD 230
>sp|Q08093|CNN2_MOUSE Calponin-2 (Calponin H2, smooth muscle) (Neutral calponin)
Length = 305
Score = 50.8 bits (120), Expect = 2e-06
Identities = 36/69 (52%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +2
Query: 32 ISLQYGTNLGANQNGMRI-GTQRHITDISCGLEPNKNSSNFISLQMGPSMKEVANQSGMS 208
ISLQ GTN A+Q GM GT+RHI D G + NSS +SLQMG + ANQSG
Sbjct: 206 ISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNSS--MSLQMG--YTQGANQSGQV 261
Query: 209 FGAQRHIND 235
FG R I D
Sbjct: 262 FGLGRQIYD 270
Score = 45.4 bits (106), Expect = 7e-05
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Frame = +2
Query: 14 KEAQSIISLQYGTNLGANQNGM-RIGTQRHITDISCGLEPNKNSSNFISLQMGPSMKEVA 190
K Q +I LQ GTN A+Q+GM GT+RH+ D + P + ISLQMG + + A
Sbjct: 160 KAGQCVIGLQMGTNKCASQSGMTAYGTRRHLYDPKNHILPPMDHCT-ISLQMGTN--KCA 216
Query: 191 NQSGMSF-GAQRHINDS 238
+Q GM+ G +RHI D+
Sbjct: 217 SQVGMTAPGTRRHIYDT 233
>sp|P26932|CNN1_CHICK Calponin-1 (Calponin, smooth muscle)
Length = 292
Score = 47.8 bits (112), Expect = 1e-05
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Frame = +2
Query: 23 QSIISLQYGTNLGANQNGMRI-GTQRHITDISCGLEPNKNSSNFISLQMGPSMKEVANQS 199
Q+ ISLQ GTN GA+Q GM GT+R I + S G+E + +N I LQMG + + A+Q
Sbjct: 201 QATISLQMGTNKGASQAGMTAPGTKRQIFEPSLGME--RCDTNIIGLQMGSN--KGASQQ 256
Query: 200 GMS-FGAQRHIND 235
GM+ +G R + D
Sbjct: 257 GMTVYGLPRQVYD 269
>sp|Q08290|CNN1_RAT Calponin-1 (Calponin H1, smooth muscle) (Basic calponin)
Length = 297
Score = 42.0 bits (97), Expect = 7e-04
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = +2
Query: 23 QSIISLQYGTNLGANQNGMRI-GTQRHITDISCGLEPNKNSSNFISLQMGPSMKEVANQS 199
Q+ ISLQ GTN GA+Q GM GT+R I + G+E + +SLQMG + + A+Q
Sbjct: 201 QATISLQMGTNKGASQAGMTAPGTKRQIFEPGLGMEHCDTLN--VSLQMGSN--KGASQR 256
Query: 200 GMS-FGAQRHIND 235
GM+ +G R + D
Sbjct: 257 GMTVYGLPRQVYD 269
>sp|Q08092|CNN1_PIG Calponin-1 (Calponin H1, smooth muscle) (Basic calponin)
Length = 297
Score = 42.0 bits (97), Expect = 7e-04
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = +2
Query: 23 QSIISLQYGTNLGANQNGMRI-GTQRHITDISCGLEPNKNSSNFISLQMGPSMKEVANQS 199
Q+ ISLQ GTN GA+Q GM GT+R I + G+E + +SLQMG + + A+Q
Sbjct: 201 QATISLQMGTNKGASQAGMTAPGTKRQIFEPGLGMEHCDTLN--VSLQMGSN--KGASQR 256
Query: 200 GMS-FGAQRHIND 235
GM+ +G R + D
Sbjct: 257 GMTVYGLPRQVYD 269
>sp|P51911|CNN1_HUMAN Calponin-1 (Calponin H1, smooth muscle) (Basic calponin)
Length = 297
Score = 42.0 bits (97), Expect = 7e-04
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = +2
Query: 23 QSIISLQYGTNLGANQNGMRI-GTQRHITDISCGLEPNKNSSNFISLQMGPSMKEVANQS 199
Q+ ISLQ GTN GA+Q GM GT+R I + G+E + +SLQMG + + A+Q
Sbjct: 201 QATISLQMGTNKGASQAGMTAPGTKRQIFEPGLGMEHCDTLN--VSLQMGSN--KGASQR 256
Query: 200 GMS-FGAQRHIND 235
GM+ +G R + D
Sbjct: 257 GMTVYGLPRQVYD 269
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,985,853
Number of Sequences: 369166
Number of extensions: 1111822
Number of successful extensions: 2246
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2236
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2871696580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)