Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_G23
(433 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P37167|ACTP_ACACA Actophorin 52 5e-07
sp|Q9LQ81|ADFX_ARATH Actin-depolymerizing factor like At1g0... 49 3e-06
sp|Q9FVI2|ADF1_PETHY Actin-depolymerizing factor 1 (ADF 1) 49 6e-06
sp|Q39250|ADF1_ARATH Actin-depolymerizing factor 1 (ADF-1) ... 48 8e-06
sp|Q8SAG3|ADF_VITVI Actin-depolymerizing factor (ADF) 48 8e-06
sp|Q9ZSK4|ADF3_ARATH Actin-depolymerizing factor 3 (ADF 3) ... 47 1e-05
sp|Q9FVI1|ADF2_PETHY Actin-depolymerizing factor 2 (ADF 2) 47 2e-05
sp|Q9ZSK2|ADF6_ARATH Actin-depolymerizing factor 6 (ADF-6) ... 46 4e-05
sp|P23528|COF1_HUMAN Cofilin-1 (Cofilin, non-muscle isoform... 45 7e-05
sp|P18359|DEST_CHICK Destrin (Actin-depolymerizing factor) ... 45 7e-05
>sp|P37167|ACTP_ACACA Actophorin
Length = 138
Score = 52.0 bits (123), Expect = 5e-07
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Frame = +2
Query: 2 YVIYGLKKEKNRIIKLETGELGSPYEKFKRHIIEGYAQEGCYGWYDYE--------GTLA 157
YV + + ++ G + YE FK + E ++ Y +DYE +
Sbjct: 25 YVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPE---RDCRYAIFDYEFQVDGGQRNKIT 81
Query: 158 FISWIPETMKINSRMIMGASKAEIATRMVGVKAKIEANSEDEIDEGVIKEETASKV 325
FI W P++ I S+M+ ++K I ++VG++ +++A EI E + E V
Sbjct: 82 FILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERAKKDV 137
>sp|Q9LQ81|ADFX_ARATH Actin-depolymerizing factor like At1g01750 (ADF-like)
Length = 140
Score = 49.3 bits (116), Expect = 3e-06
Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Frame = +2
Query: 2 YVIYGLKKEKNRIIKLETGELGSPYEKFKRHIIEGYAQEGCYGWYDYEGT---------L 154
++++ + ++ +++ + G YE F R I E E Y YDY+ T +
Sbjct: 29 FIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPE---DECRYAVYDYDFTTPENCQKSKI 85
Query: 155 AFISWIPETMKINSRMIMGASKAEIATRMVGVKAKIEANSEDEIDEGVIK 304
FI+W P+T ++ S+M+ +SK + G++ +++A E+ +IK
Sbjct: 86 FFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIK 135
>sp|Q9FVI2|ADF1_PETHY Actin-depolymerizing factor 1 (ADF 1)
Length = 139
Score = 48.5 bits (114), Expect = 6e-06
Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Frame = +2
Query: 2 YVIYGLKKEKNRIIKLETGELGSPYEKFKRHIIEGYAQEGCYGWYDYEGTLA-------- 157
+++Y +++++ +++ + GE YE F + E + Y YD++ A
Sbjct: 29 FIVYKIEEKQKQVVVEKIGEPTESYEDFAASLPENECR---YAVYDFDFVTAENCQKSRI 85
Query: 158 -FISWIPETMKINSRMIMGASKAEIATRMVGVKAKIEANSEDEIDEGVIK 304
FI+W P+T ++ S+MI +SK + G++ +++A E+ VI+
Sbjct: 86 FFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQ 135
>sp|Q39250|ADF1_ARATH Actin-depolymerizing factor 1 (ADF-1) (AtADF1)
Length = 139
Score = 48.1 bits (113), Expect = 8e-06
Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Frame = +2
Query: 2 YVIYGLKKEKNRIIKLETGELGSPYEKFKRHIIEGYAQEGCYGWYDYEGTLA-------- 157
+++Y +++++ +++ + G+ YE+F + A E Y YD++ A
Sbjct: 29 FIVYKIEEKQKQVVVEKVGQPIQTYEEFAACL---PADECRYAIYDFDFVTAENCQKSKI 85
Query: 158 -FISWIPETMKINSRMIMGASKAEIATRMVGVKAKIEANSEDEIDEGVIK 304
FI+W P+ K+ S+MI +SK + G++ +++A E+D V +
Sbjct: 86 FFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFR 135
>sp|Q8SAG3|ADF_VITVI Actin-depolymerizing factor (ADF)
Length = 143
Score = 48.1 bits (113), Expect = 8e-06
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Frame = +2
Query: 2 YVIYGLKKEKNRIIKLETGELGSPYEKFKRHIIEGYAQEGCYGWYDYE---------GTL 154
YVI+ + ++K ++ +TG +++F + E + Y YD++ +
Sbjct: 33 YVIFKIDEKKKEVVVEKTGGPAESFDEFAAALPENDCR---YAVYDFDFVTSENCQKSKI 89
Query: 155 AFISWIPETMKINSRMIMGASKAEIATRMVGVKAKIEANSEDEIDEGVIKE 307
FI+W P++ +I ++M+ SK + GV +I+A E+D V++E
Sbjct: 90 FFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEVLRE 140
>sp|Q9ZSK4|ADF3_ARATH Actin-depolymerizing factor 3 (ADF 3) (AtADF3)
Length = 139
Score = 47.4 bits (111), Expect = 1e-05
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Frame = +2
Query: 2 YVIYGLKKEKNRIIKLETGELGSPYEKFKRHIIEGYAQEGCYGWYDYE---------GTL 154
++IY +++ + ++I + GE G +E + A E Y +D++ +
Sbjct: 29 FIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP---ADECRYAIFDFDFVSSEGVPRSRI 85
Query: 155 AFISWIPETMKINSRMIMGASKAEIATRMVGVKAKIEANSEDEIDEGVIK 304
F++W P+T ++ S+MI +SK + G++ +++A E+D V K
Sbjct: 86 FFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFK 135
>sp|Q9FVI1|ADF2_PETHY Actin-depolymerizing factor 2 (ADF 2)
Length = 143
Score = 47.0 bits (110), Expect = 2e-05
Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Frame = +2
Query: 2 YVIYGLKKEKNRIIKLETGELGSPYEKFKRHIIEGYAQEGCYGWYDYE---------GTL 154
++IY +++++ ++ + GE YE F + A E Y YD++ +
Sbjct: 29 FIIYKIEEKQKEVVVEKLGEPTESYEDFTAGLP---ADECRYAVYDFDFMTKENHQKSRI 85
Query: 155 AFISWIPETMKINSRMIMGASKAEIATRMVGVKAKIEANSEDEIDEGVIK 304
FI+W P+T ++ S+MI +SK + G++ +++A E+ V +
Sbjct: 86 FFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFR 135
>sp|Q9ZSK2|ADF6_ARATH Actin-depolymerizing factor 6 (ADF-6) (AtADF6)
Length = 146
Score = 45.8 bits (107), Expect = 4e-05
Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Frame = +2
Query: 2 YVIYGLKKEKNRIIKLETGELGSPYEKFKRHIIEGYAQEGCYGWYDYE---------GTL 154
YV++ + + K ++ +TG Y+ F + + + Y YD++ +
Sbjct: 36 YVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDNDCR---YAVYDFDFVTSENCQKSKI 92
Query: 155 AFISWIPETMKINSRMIMGASKAEIATRMVGVKAKIEANSEDEIDEGVIKE 307
F +W P T I ++++ SK +++ + G+ +I+A E+D V++E
Sbjct: 93 FFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRE 143
>sp|P23528|COF1_HUMAN Cofilin-1 (Cofilin, non-muscle isoform) (18 kDa phosphoprotein)
(p18)
Length = 166
Score = 45.1 bits (105), Expect = 7e-05
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 14/110 (12%)
Frame = +2
Query: 5 VIYGLKKEKNRIIKLE-----TGELGSPYEKFKRHIIEGYAQEGC-YGWYD--YEGT--- 151
V++ L ++K II E G++G + ++ + C Y YD YE
Sbjct: 36 VLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKESK 95
Query: 152 ---LAFISWIPETMKINSRMIMGASKAEIATRMVGVKAKIEANSEDEIDE 292
L FI W PE+ + S+MI +SK I ++ G+K +++AN +E+ +
Sbjct: 96 KEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKD 145
>sp|P18359|DEST_CHICK Destrin (Actin-depolymerizing factor) (ADF)
Length = 165
Score = 45.1 bits (105), Expect = 7e-05
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Frame = +2
Query: 5 VIYGLKKEKNRIIKLE-----TGELGSPYEKFKRHIIEGYAQEGC-YGWYDY-------- 142
VI+ L +K II E G++G +H +E ++ C Y YD
Sbjct: 36 VIFCLSPDKKCIIVEEGKEILVGDVGVTVTDPFKHFVEMLPEKDCRYALYDASFETKESK 95
Query: 143 EGTLAFISWIPETMKINSRMIMGASKAEIATRMVGVKAKIEANSEDEIDEGVIKEE 310
+ L F W PE + S+MI +SK I + G+K + +AN ++++ I E+
Sbjct: 96 KEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,041,804
Number of Sequences: 369166
Number of extensions: 651917
Number of successful extensions: 1755
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1754
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)