Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_G14
(590 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q07549|YD23_YEAST Hypothetical UPF0057 protein YDL123w 31 2.6
sp|P04133|HEX_ADE05 Hexon protein (Late protein 2) 30 3.5
sp|P39336|YJGL_ECOLI Hypothetical protein yjgL 30 4.5
sp|Q9PWI3|PLIGB_ELAQU Phospholipase A2 inhibitor gamma subu... 30 5.9
sp|P05468|DPO2_KLULA DNA polymerase (Plasmid PGKL-2 protein 2) 29 7.7
sp|Q66790|POLG_EC16H Genome polyprotein [Contains: Coat pro... 29 7.7
>sp|Q07549|YD23_YEAST Hypothetical UPF0057 protein YDL123w
Length = 140
Score = 30.8 bits (68), Expect = 2.6
Identities = 14/56 (25%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +2
Query: 293 QSSSKSTNWVLNIYIAMAVFIIGLI--FYYMALFVRLNNADSIHFNERSELSHECN 454
+S S++++LN+ + + F+ G++ FYY+ + L NA+ +++ ++ + E N
Sbjct: 30 RSGPCSSDFLLNVLLTLLGFLPGMLHAFYYITITSPLRNAEYVYYYQQGWVDSERN 85
>sp|P04133|HEX_ADE05 Hexon protein (Late protein 2)
Length = 952
Score = 30.4 bits (67), Expect = 3.5
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Frame = +2
Query: 122 QTNWAKKLCNHNDMNQLKIQCNNIVDNCLTNQMANVNVLRDYLYSTVCDFLSCE-KYWQS 298
+ W K +D N++++ N ++ L N N+ R++LYS + +L + KY S
Sbjct: 436 ENGWEKDATEFSDKNEIRVGNNFAMEINL-----NANLWRNFLYSNIALYLPDKLKYSPS 490
Query: 299 SSK-STNWVLNIYIAMAVFIIGLIFYYMALFVR--LNNADSIHFNERSELSHECNRHGIN 469
+ K S N Y+ V GL+ Y+ L R L+ D++ + +H N G+
Sbjct: 491 NVKISDNPNTYDYMNKRVVAPGLVDCYINLGARWSLDYMDNV-----NPFNHHRNA-GLR 544
Query: 470 YR 475
YR
Sbjct: 545 YR 546
>sp|P39336|YJGL_ECOLI Hypothetical protein yjgL
Length = 604
Score = 30.0 bits (66), Expect = 4.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 98 SNRYNKPTQTNWAKKLCNHNDMNQLKIQCNNIVDNCLT 211
S N P + N ++L N D+N K+ C VD+ +T
Sbjct: 237 SQELNSPQELNDPQELNNSQDLNNSKVSCTVSVDSTIT 274
>sp|Q9PWI3|PLIGB_ELAQU Phospholipase A2 inhibitor gamma subunit B precursor (PLI-gamma B)
Length = 200
Score = 29.6 bits (65), Expect = 5.9
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +2
Query: 14 NKHHDQLNKAENHVCLGDFCQLFRCEILSNRYNKPTQTNWAKKL-CNHNDMNQLKIQCNN 190
N H + +A+ C GD CQ +L + N+P + + N+ + C
Sbjct: 81 NPHTELTLRAKRACCTGDECQTLPPPVLEPQVNRPNGLQCPGCIGLTSTECNEYLVSCQG 140
Query: 191 IVDNCLT 211
+ CLT
Sbjct: 141 SENQCLT 147
>sp|P05468|DPO2_KLULA DNA polymerase (Plasmid PGKL-2 protein 2)
Length = 994
Score = 29.3 bits (64), Expect = 7.7
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +2
Query: 128 NWAK---KLCNHNDMNQLKIQCNNIVDNCLTNQMANVNVLRDYLYSTVCDFLSCEKYWQS 298
NW K ++ + D N+L I NI N +L + + D L+ EK W
Sbjct: 506 NWVKIQKRMIEYKDDNKLNIYYKNI--EIFENDRNYNTILENAIEYCKVDVLAMEKVWIK 563
Query: 299 SSKSTNWVLNIYIAMAVFII 358
K LNI +++ F +
Sbjct: 564 FKKLLEKNLNITVSVKTFTL 583
>sp|Q66790|POLG_EC16H Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
(P1D); Picornain 2A (Core protein P2A)]
Length = 862
Score = 29.3 bits (64), Expect = 7.7
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +2
Query: 2 RHVDNKHHDQLNKAENHVCLGDFCQLFRCEILSNRYNKPTQTNWAKKLCNHNDMNQLKIQ 181
RHV N H + EN +C + R E +N N+ W N+ ++ QL+ +
Sbjct: 621 RHVKNYHSRSESTIENFLCRSACVHIARYEAGANASNEDRFVRWE---INNKELVQLRRK 677
Query: 182 C 184
C
Sbjct: 678 C 678
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,069,547
Number of Sequences: 369166
Number of extensions: 1254137
Number of successful extensions: 2884
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2881
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4455160255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)