Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_G09
(954 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51892|DNL1_XENLA DNA ligase I (Polydeoxyribonucleotide ... 362 e-100
sp|P37913|DNL1_MOUSE DNA ligase I (Polydeoxyribonucleotide ... 347 2e-95
sp|P18858|DNL1_HUMAN DNA ligase I (Polydeoxyribonucleotide ... 341 2e-93
sp|Q9JHY8|DNL1_RAT DNA ligase I (Polydeoxyribonucleotide sy... 338 2e-92
sp|P12000|DNLI_SCHPO DNA ligase (Polydeoxyribonucleotide sy... 313 6e-85
sp|Q42572|DNLI_ARATH DNA ligase (Polydeoxyribonucleotide sy... 311 1e-84
sp|Q27474|DNLI_CAEEL DNA ligase (Polydeoxyribonucleotide sy... 300 5e-81
sp|P04819|DNLI_YEAST DNA ligase I, mitochondrial precursor ... 266 8e-71
sp|Q6L195|DNLI_PICTO DNA ligase (Polydeoxyribonucleotide sy... 209 9e-54
sp|Q9HJ26|DNLI_THEAC DNA ligase (Polydeoxyribonucleotide sy... 204 2e-52
>sp|P51892|DNL1_XENLA DNA ligase I (Polydeoxyribonucleotide synthase [ATP])
Length = 1070
Score = 362 bits (929), Expect = e-100
Identities = 170/295 (57%), Positives = 225/295 (76%)
Frame = +2
Query: 32 SVQSCIIDSEAVAWDRETKSILPFQKLSTRKKKDVNEDEIKIQVCIYAFDLIYFNGQSLV 211
SV+SCI+D+EAVA D E K I PFQ L+TRK+KDV+ EIK+QVC+YAFD++Y NG+SLV
Sbjct: 765 SVKSCILDTEAVAGDAEKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDMLYLNGESLV 824
Query: 212 KQSLKERRDILKENFVEKPGQFMLASSINSCTTDEISEFLEQSIKDKCEGLMIKTLDKNA 391
K+ +RR +L+++F+E GQFM A+ ++ TDEISEFL+QSIKD CEGLM+KTL+++A
Sbjct: 825 KEPFAKRRQLLRDSFLETEGQFMFATYMDKSNTDEISEFLDQSIKDSCEGLMVKTLEQDA 884
Query: 392 TYQISQRSRXXXXXXXXXXXXXGDTVDLVVIGASFGTGKRANKYGTFLLGCYDPENDMYQ 571
TY+I++RS GDT+DLVVIGA G GKR YG FLL YD E++ YQ
Sbjct: 885 TYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRTGIYGGFLLASYDEESEEYQ 944
Query: 572 TICKLGTGFSDEDLDNFYNQLREIATRRPDNYYDYDKTCKPDCWFDPKYVWEIKAADLSI 751
TICK+GTGF+D+DL+ YN L++ P +YY +D +PD WFDP VWE+K ADLSI
Sbjct: 945 TICKIGTGFTDDDLEKHYNFLKDHVIENPRSYYRWDSATEPDHWFDPVQVWEVKCADLSI 1004
Query: 752 SPDHKAAVGLVDDEKGISLRFPRFIRVREDKKPEGATTSRQIAEMYRNQDSVKST 916
SP HKAA+GLV+D+KGISLRFPRF+R+R+DKKPE +T S Q+A++YR Q +++T
Sbjct: 1005 SPVHKAALGLVEDQKGISLRFPRFLRIRDDKKPEESTNSFQVADLYRKQQQIQNT 1059
>sp|P37913|DNL1_MOUSE DNA ligase I (Polydeoxyribonucleotide synthase [ATP])
Length = 916
Score = 347 bits (891), Expect = 2e-95
Identities = 170/298 (57%), Positives = 217/298 (72%)
Frame = +2
Query: 32 SVQSCIIDSEAVAWDRETKSILPFQKLSTRKKKDVNEDEIKIQVCIYAFDLIYFNGQSLV 211
SV S I+D+EAVAWDRE K I PFQ L+TRK+K+V+ EI++QVC+YAFDLIY NG+SLV
Sbjct: 610 SVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLV 669
Query: 212 KQSLKERRDILKENFVEKPGQFMLASSINSCTTDEISEFLEQSIKDKCEGLMIKTLDKNA 391
+Q L RR +L+ENFVE G+F+ +S+++ T++I+EFLEQS+KD CEGLM+KTLD +A
Sbjct: 670 RQPLSRRRQLLRENFVETEGEFVFTTSLDTKDTEQIAEFLEQSVKDSCEGLMVKTLDVDA 729
Query: 392 TYQISQRSRXXXXXXXXXXXXXGDTVDLVVIGASFGTGKRANKYGTFLLGCYDPENDMYQ 571
TY+I++RS GDT+DLVVIGA G GKRA +YG FLL YD E++ Q
Sbjct: 730 TYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEESEELQ 789
Query: 572 TICKLGTGFSDEDLDNFYNQLREIATRRPDNYYDYDKTCKPDCWFDPKYVWEIKAADLSI 751
ICKLGTGFSDE+L+ + L+ + P Y D PD W DP VWE+K ADLS+
Sbjct: 790 AICKLGTGFSDEELEEHHQSLQALVLPTPRPYVRIDGAVAPDHWLDPSIVWEVKCADLSL 849
Query: 752 SPDHKAAVGLVDDEKGISLRFPRFIRVREDKKPEGATTSRQIAEMYRNQDSVKSTQIS 925
SP + AA GLVD EKGISLRFPRFIRVR+DK+PE ATTS Q+A +YR Q +++ Q S
Sbjct: 850 SPIYPAARGLVDKEKGISLRFPRFIRVRKDKQPEQATTSNQVASLYRKQSQIQNQQSS 907
>sp|P18858|DNL1_HUMAN DNA ligase I (Polydeoxyribonucleotide synthase [ATP])
Length = 919
Score = 341 bits (875), Expect = 2e-93
Identities = 167/296 (56%), Positives = 216/296 (72%)
Frame = +2
Query: 32 SVQSCIIDSEAVAWDRETKSILPFQKLSTRKKKDVNEDEIKIQVCIYAFDLIYFNGQSLV 211
SV S I+D+EAVAWDRE K I PFQ L+TRK+K+V+ EI++QVC+YAFDLIY NG+SLV
Sbjct: 612 SVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLV 671
Query: 212 KQSLKERRDILKENFVEKPGQFMLASSINSCTTDEISEFLEQSIKDKCEGLMIKTLDKNA 391
++ L RR +L+ENFVE G+F+ A+S+++ ++I+EFLEQS+KD CEGLM+KTLD +A
Sbjct: 672 REPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDA 731
Query: 392 TYQISQRSRXXXXXXXXXXXXXGDTVDLVVIGASFGTGKRANKYGTFLLGCYDPENDMYQ 571
TY+I++RS GDT+DLVVIGA G GKRA +YG FLL YD +++ Q
Sbjct: 732 TYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQ 791
Query: 572 TICKLGTGFSDEDLDNFYNQLREIATRRPDNYYDYDKTCKPDCWFDPKYVWEIKAADLSI 751
ICKLGTGFSDE+L+ + L+ + P Y D PD W DP VWE+K ADLS+
Sbjct: 792 AICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSAVWEVKCADLSL 851
Query: 752 SPDHKAAVGLVDDEKGISLRFPRFIRVREDKKPEGATTSRQIAEMYRNQDSVKSTQ 919
SP + AA GLVD +KGISLRFPRFIRVREDK+PE ATTS Q+A +YR Q +++ Q
Sbjct: 852 SPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQ 907
>sp|Q9JHY8|DNL1_RAT DNA ligase I (Polydeoxyribonucleotide synthase [ATP])
Length = 918
Score = 338 bits (866), Expect = 2e-92
Identities = 164/298 (55%), Positives = 215/298 (72%)
Frame = +2
Query: 32 SVQSCIIDSEAVAWDRETKSILPFQKLSTRKKKDVNEDEIKIQVCIYAFDLIYFNGQSLV 211
SV S I+D+EAVAWDRE K I PFQ L+TRK+K+V+ EI++QVC+YAFDLIY NG+SL
Sbjct: 612 SVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLA 671
Query: 212 KQSLKERRDILKENFVEKPGQFMLASSINSCTTDEISEFLEQSIKDKCEGLMIKTLDKNA 391
+Q L RR +L+ENFVE G+F+ A+S+++ ++I+EFLEQS+KD CEGLM+KTLD +A
Sbjct: 672 RQPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDA 731
Query: 392 TYQISQRSRXXXXXXXXXXXXXGDTVDLVVIGASFGTGKRANKYGTFLLGCYDPENDMYQ 571
TY+I++RS GDT+DLVVIGA G GKR +YG FLL YD E++
Sbjct: 732 TYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGRGKRPGRYGGFLLAAYDEESEELA 791
Query: 572 TICKLGTGFSDEDLDNFYNQLREIATRRPDNYYDYDKTCKPDCWFDPKYVWEIKAADLSI 751
ICKLGTGFSDE+L+ + ++ + P Y D P+ W DP VWE+K ADL++
Sbjct: 792 AICKLGTGFSDEELEEHHQNMQALLLPTPRPYVRIDGAVAPNHWLDPSIVWEVKCADLTL 851
Query: 752 SPDHKAAVGLVDDEKGISLRFPRFIRVREDKKPEGATTSRQIAEMYRNQDSVKSTQIS 925
SP ++AA G+VD EKGISLRFPRFIRVREDK+PE ATTS Q+A +YR Q +++ Q S
Sbjct: 852 SPIYRAARGMVDKEKGISLRFPRFIRVREDKQPEQATTSDQVASLYRKQSQIQNQQSS 909
>sp|P12000|DNLI_SCHPO DNA ligase (Polydeoxyribonucleotide synthase [ATP])
Length = 768
Score = 313 bits (801), Expect = 6e-85
Identities = 150/290 (51%), Positives = 205/290 (70%), Gaps = 3/290 (1%)
Frame = +2
Query: 38 QSCIIDSEAVAWDRETKSILPFQKLSTRKKKDVNEDEIKIQVCIYAFDLIYFNGQSLVKQ 217
+S I+D EAV WDR+ ILPFQKL+TRK+KDV +IK++ C++AFD++Y NGQ L++
Sbjct: 462 RSFILDCEAVGWDRDENKILPFQKLATRKRKDVKIGDIKVRACLFAFDILYLNGQPLLET 521
Query: 218 SLKERRDILKENFVEKPGQFMLASSINSCTTDEISEFLEQSIKDKCEGLMIKTLD-KNAT 394
L ERR +L F G F A + + + I EFLE+S+KD CEGLM+K L+ ++
Sbjct: 522 PLNERRKLLYSMFQPSTGDFTFAKHSDQKSIESIEEFLEESVKDSCEGLMVKMLEGPDSH 581
Query: 395 YQISQRSRXXXXXXXXXXXXXGDTVDLVVIGASFGTGKRANKYGTFLLGCYDPENDMYQT 574
Y+ S+RSR GD++DL+VIGA +G GKR + YG FLLGCYDP+ + Q+
Sbjct: 582 YEPSKRSRHWLKVKKDYLSGVGDSLDLIVIGAYYGKGKRTSVYGAFLLGCYDPDTETVQS 641
Query: 575 ICKLGTGFSDEDLDNFYNQLREIATRRPDNYYDYD--KTCKPDCWFDPKYVWEIKAADLS 748
ICKLGTGFS+E L+ FYNQL++I + ++Y + +PD WF+PKY+WE+ AADLS
Sbjct: 642 ICKLGTGFSEEHLETFYNQLKDIVISKKKDFYAHSDVPAHQPDVWFEPKYLWEVLAADLS 701
Query: 749 ISPDHKAAVGLVDDEKGISLRFPRFIRVREDKKPEGATTSRQIAEMYRNQ 898
+SP +KAA+G V ++KGISLRFPRFIR+REDK E ATTS Q++E YR+Q
Sbjct: 702 LSPVYKAAIGYVQEDKGISLRFPRFIRIREDKSWEDATTSEQVSEFYRSQ 751
>sp|Q42572|DNLI_ARATH DNA ligase (Polydeoxyribonucleotide synthase [ATP])
Length = 790
Score = 311 bits (798), Expect = 1e-84
Identities = 155/289 (53%), Positives = 202/289 (69%)
Frame = +2
Query: 32 SVQSCIIDSEAVAWDRETKSILPFQKLSTRKKKDVNEDEIKIQVCIYAFDLIYFNGQSLV 211
SV+S I+D E VA+DRE K ILPFQ LSTR +K+VN ++IK+ VCI+AFD++Y NGQ L+
Sbjct: 488 SVKSFILDCEVVAFDREKKKILPFQILSTRARKNVNVNDIKVGVCIFAFDMLYLNGQQLI 547
Query: 212 KQSLKERRDILKENFVEKPGQFMLASSINSCTTDEISEFLEQSIKDKCEGLMIKTLDKNA 391
+++LK RR+ L E+F E PG F A+++ S DEI +FL+ S+ CEGL+IKTLD +A
Sbjct: 548 QENLKIRREKLYESFEEDPGYFQFATAVTSNDIDEIQKFLDASVDVGCEGLIIKTLDSDA 607
Query: 392 TYQISQRSRXXXXXXXXXXXXXGDTVDLVVIGASFGTGKRANKYGTFLLGCYDPENDMYQ 571
TY+ ++RS GD+VDLV I A G GKR YG FLL CYD + + +Q
Sbjct: 608 TYEPAKRSNNWLKLKKDYMDSIGDSVDLVPIAAFHGRGKRTGVYGAFLLACYDVDKEEFQ 667
Query: 572 TICKLGTGFSDEDLDNFYNQLREIATRRPDNYYDYDKTCKPDCWFDPKYVWEIKAADLSI 751
+ICK+GTGFSD LD + LR P YY + PD WF+P VWE+KAADL+I
Sbjct: 668 SICKIGTGFSDAMLDERSSSLRSQVIATPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTI 727
Query: 752 SPDHKAAVGLVDDEKGISLRFPRFIRVREDKKPEGATTSRQIAEMYRNQ 898
SP H+AA G+VD +KGISLRFPR +RVREDKKPE AT+S QIA++Y+ Q
Sbjct: 728 SPVHRAATGIVDPDKGISLRFPRLLRVREDKKPEEATSSEQIADLYQAQ 776
>sp|Q27474|DNLI_CAEEL DNA ligase (Polydeoxyribonucleotide synthase [ATP])
Length = 773
Score = 300 bits (767), Expect = 5e-81
Identities = 147/296 (49%), Positives = 209/296 (70%)
Frame = +2
Query: 35 VQSCIIDSEAVAWDRETKSILPFQKLSTRKKKDVNEDEIKIQVCIYAFDLIYFNGQSLVK 214
V S I+D+E VA D E ILPFQ LSTRK+K+ +D ++V ++ FDL+YFNG+ LV+
Sbjct: 334 VTSFIVDAEVVAID-EAGLILPFQVLSTRKRKNATDDN-GVKVVVFLFDLLYFNGEPLVR 391
Query: 215 QSLKERRDILKENFVEKPGQFMLASSINSCTTDEISEFLEQSIKDKCEGLMIKTLDKNAT 394
+ L++RR++L+ NF + G F A+S+++ TDEI+ F ++++++KCEGLMIKTLD AT
Sbjct: 392 KPLRKRRELLRTNFKKIDGSFYFATSVDTNDTDEINSFFDEAVQNKCEGLMIKTLDTEAT 451
Query: 395 YQISQRSRXXXXXXXXXXXXXGDTVDLVVIGASFGTGKRANKYGTFLLGCYDPENDMYQT 574
Y+IS+RS GDT+DLVV+GA G GKR YG +LLGCY+P + Y++
Sbjct: 452 YEISRRSHSWLKMKKDYVDGVGDTLDLVVMGAYSGVGKRTGVYGGYLLGCYNPTTEEYES 511
Query: 575 ICKLGTGFSDEDLDNFYNQLREIATRRPDNYYDYDKTCKPDCWFDPKYVWEIKAADLSIS 754
+CK+GTGF+DEDL Y L++ + +YY +D T KPD F P V+E+K AD++IS
Sbjct: 512 VCKIGTGFTDEDLAEQYKILQDKKIDKSPSYYQFDHTLKPDDTFSPYLVFEVKCADITIS 571
Query: 755 PDHKAAVGLVDDEKGISLRFPRFIRVREDKKPEGATTSRQIAEMYRNQDSVKSTQI 922
P HKAA GL DD KGISLRFPRF+R+R+DK + AT+S Q+ EMY+NQ++ + +I
Sbjct: 572 PRHKAASGLTDDGKGISLRFPRFLRIRDDKNSDDATSSEQVLEMYKNQEAFANQKI 627
>sp|P04819|DNLI_YEAST DNA ligase I, mitochondrial precursor (Polydeoxyribonucleotide
synthase [ATP])
Length = 755
Score = 266 bits (679), Expect = 8e-71
Identities = 130/295 (44%), Positives = 196/295 (66%), Gaps = 1/295 (0%)
Frame = +2
Query: 32 SVQSCIIDSEAVAWDRETKSILPFQKLSTRKKKDVNEDEIKIQVCIYAFDLIYFNGQSLV 211
+ ++ I+D EAVAWD++ ILPFQ LSTRK+KDV +++K++VC++AFD++ +N + L+
Sbjct: 463 TTKNLILDCEAVAWDKDQGKILPFQVLSTRKRKDVELNDVKVKVCLFAFDILCYNDERLI 522
Query: 212 KQSLKERRDILKENFVEKPGQFMLASSINSCTTDEISEFLEQSIKDKCEGLMIKTLD-KN 388
+SLKERR+ L + PG+F A+ I + DE+ +FL++S+ CEGLM+K L+
Sbjct: 523 NKSLKERREYLTKVTKVVPGEFQYATQITTNNLDELQKFLDESVNHSCEGLMVKMLEGPE 582
Query: 389 ATYQISQRSRXXXXXXXXXXXXXGDTVDLVVIGASFGTGKRANKYGTFLLGCYDPENDMY 568
+ Y+ S+RSR GD++DL V+GA +G GKR YG FLLGCY+ + +
Sbjct: 583 SHYEPSKRSRNWLKLKKDYLEGVGDSLDLCVLGAYYGRGKRTGTYGGFLLGCYNQDTGEF 642
Query: 569 QTICKLGTGFSDEDLDNFYNQLREIATRRPDNYYDYDKTCKPDCWFDPKYVWEIKAADLS 748
+T CK+GTGFSDE L +++L P + +D + +PD WF+P ++E+ ADLS
Sbjct: 643 ETCCKIGTGFSDEMLQLLHDRLTPTIIDGPKATFVFDSSAEPDVWFEPTTLFEVLTADLS 702
Query: 749 ISPDHKAAVGLVDDEKGISLRFPRFIRVREDKKPEGATTSRQIAEMYRNQDSVKS 913
+SP +KA G +KG+SLRFPRF+R+REDK E AT+S QI E+Y NQ +++
Sbjct: 703 LSPIYKA--GSATFDKGVSLRFPRFLRIREDKGVEDATSSDQIVELYENQSHMQN 755
>sp|Q6L195|DNLI_PICTO DNA ligase (Polydeoxyribonucleotide synthase [ATP])
Length = 590
Score = 209 bits (532), Expect = 9e-54
Identities = 112/295 (37%), Positives = 176/295 (59%), Gaps = 3/295 (1%)
Frame = +2
Query: 32 SVQSCIIDSEAVAWDRETKSILPFQKLSTRK--KKDVNEDEIKIQVCIYAFDLIYFNGQS 205
S SCIID E+V ++ ET + PFQ +S R+ K ++ E ++ + ++ FD++Y NG+S
Sbjct: 296 SFDSCIIDGESVPYNPETGELYPFQMVSKRRGRKYELTEKTREVPIVMFIFDILYLNGKS 355
Query: 206 LVKQSLKERRDILKENFVEKPGQFMLASSINSCTTDEISEFLEQSIKDKCEGLMIKTLDK 385
LV ERR IL++NF E F LA I S +I +F E+SI++ CEG++ K+
Sbjct: 356 LVNLPYPERRSILEKNFKENE-YFKLAKRIVSDDEHDIMKFFERSIEEGCEGIVAKSNGI 414
Query: 386 NATYQISQRSRXXXXXXXXXXXXXGDTVDLVVIGASFGTGKRANKYGTFLLGCYDPENDM 565
++ Y+ R D++DLVV+GA G G+R +G LL CY+ ++D
Sbjct: 415 DSIYRAGARGWLWIKFKRDYQSELSDSLDLVVVGAFDGHGRRKGTFGALLLACYNSKDDT 474
Query: 566 YQTICKLGTGFSDEDLDNFYNQLRE-IATRRPDNYYDYDKTCKPDCWFDPKYVWEIKAAD 742
++T+CKLG+GF+DE L L + I ++P + + +PD W P V EI+ A+
Sbjct: 475 FETVCKLGSGFTDEMLSEMPRLLGDKIVEKKPARV---NSSMEPDHWIYPSLVLEIRGAE 531
Query: 743 LSISPDHKAAVGLVDDEKGISLRFPRFIRVREDKKPEGATTSRQIAEMYRNQDSV 907
+++SP H A+ +++ G++LRFPR I+ R+DKKPE ATT+ +I EMY+ Q V
Sbjct: 532 ITVSPVHTCAMNIIEKGSGLALRFPRLIKPRDDKKPEDATTTNEIIEMYKAQKKV 586
>sp|Q9HJ26|DNLI_THEAC DNA ligase (Polydeoxyribonucleotide synthase [ATP])
Length = 588
Score = 204 bits (520), Expect = 2e-52
Identities = 111/292 (38%), Positives = 168/292 (57%), Gaps = 4/292 (1%)
Frame = +2
Query: 35 VQSCIIDSEAVAWDRETKSILPFQKLSTRK--KKDVNEDEIKIQVCIYAFDLIYFNGQSL 208
V S I+D EAV +D +T + PFQ +S R+ K D+++ +I + ++ FD++Y NG+ L
Sbjct: 292 VDSAILDGEAVPYDPDTGELYPFQVISHRRGRKYDLDKVSSEIPITVFLFDIVYLNGRDL 351
Query: 209 VKQSLKERRDILKENFVEKPGQFMLASSINSCTTDEISEFLEQSIKDKCEGLMIKTLDKN 388
K ERR IL+ F E F LA I S E+ F +I+D CEGL+ K+ +
Sbjct: 352 SKTPYTERRKILESIFTESDS-FRLAKRIESGDPAEVHRFFNSAIEDGCEGLVAKSTSPD 410
Query: 389 ATYQISQRSRXXXXXXXXXXXXXGDTVDLVVIGASFGTGKRANKYGTFLLGCYDPENDMY 568
+ Y+ R DT+DL V+GA +G G+R YG LL Y+ +ND +
Sbjct: 411 SFYKAGARGWLWIKLKRDYQAQLWDTLDLTVVGAFYGHGRRKGTYGALLLATYNDKNDTF 470
Query: 569 QTICKLGTGFSDEDLDNFYNQLRE-IATRRPDNYYDYDKTCKPDCWFDPKYVWEIKAADL 745
+T+CKLG+GFSD+ L + + + ++ +P +PD WF P V E+ A++
Sbjct: 471 ETVCKLGSGFSDDVLFSLPKKFEQYVSKEKPARVI---SNLEPDVWFYPAVVMEVIGAEI 527
Query: 746 SISPDHKAAVGLVDDEKGISLRFPRFI-RVREDKKPEGATTSRQIAEMYRNQ 898
++SP H A G ++ + G+S+RFPRF + REDKKPE +TTSR+I EMY+ Q
Sbjct: 528 TVSPIHTCAYGEIEKDSGLSVRFPRFTGKWREDKKPEDSTTSREILEMYKEQ 579
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,069,502
Number of Sequences: 369166
Number of extensions: 2152772
Number of successful extensions: 6187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6083
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 9856975370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)