Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_G05
(497 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49916|DNL3_HUMAN DNA ligase III (Polydeoxyribonucleotid... 29 5.4
sp|O14207|YDT2_SCHPO Hypothetical protein C6B12.02c in chro... 29 7.0
sp|Q67480|DNLI_FOWPV DNA ligase (Polydeoxyribonucleotide sy... 29 7.0
sp|P97386|DNL3_MOUSE DNA ligase III (Polydeoxyribonucleotid... 29 7.0
sp|Q9ZCB3|HEMK_RICPR Bifunctional methyltransferase [Includ... 28 9.2
>sp|P49916|DNL3_HUMAN DNA ligase III (Polydeoxyribonucleotide synthase [ATP])
Length = 922
Score = 29.3 bits (64), Expect = 5.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 66 AAKSCANGCKIPIKKDAEKVQIEKTG 143
A K C NG IK D E+VQ+ K G
Sbjct: 408 AMKKCPNGMFSEIKYDGERVQVHKNG 433
>sp|O14207|YDT2_SCHPO Hypothetical protein C6B12.02c in chromosome I
Length = 1888
Score = 28.9 bits (63), Expect = 7.0
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -3
Query: 495 LEQFIFLTTNKLKSNNELIVNILPYFFKKKLISLSFLEDSKYIW*LESELK*GKVE*TNS 316
++ +F T KLK E ++ LPYF + + L L + L S++ G V +S
Sbjct: 719 IQDDVFKTFEKLKDTFETVLENLPYFTNSETVDLYNLLSFCSAFILHSQVSMGLVNLASS 778
Query: 315 F 313
F
Sbjct: 779 F 779
>sp|Q67480|DNLI_FOWPV DNA ligase (Polydeoxyribonucleotide synthase [ATP])
Length = 564
Score = 28.9 bits (63), Expect = 7.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 57 FPVAAKSCANGCKIPIKKDAEKVQIEK 137
F A K C NG + K D E++QI K
Sbjct: 220 FSEAVKKCPNGIIVEFKYDGERIQIHK 246
>sp|P97386|DNL3_MOUSE DNA ligase III (Polydeoxyribonucleotide synthase [ATP])
Length = 1015
Score = 28.9 bits (63), Expect = 7.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 66 AAKSCANGCKIPIKKDAEKVQIEKTG 143
A K C NG IK D E+VQ+ K G
Sbjct: 499 AMKKCPNGMFSEIKYDGERVQVHKKG 524
>sp|Q9ZCB3|HEMK_RICPR Bifunctional methyltransferase [Includes: HemK protein homolog
(M.RprHemKP); tRNA (guanine-N(7)-)-methyltransferase
(tRNA(m7G46)-methyltransferase)]
Length = 518
Score = 28.5 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 281 SNY*KKFDKY*NEFVYSTFPYFNSDSNYQMYLESSKNESEINFFLKK*G 427
SN+ +K DK +F+ S PY + +M +E+ E I F ++ G
Sbjct: 190 SNWFEKLDKQKFDFIVSNPPYISHTEKLKMAIETINYEPSIALFAEEDG 238
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,924,272
Number of Sequences: 369166
Number of extensions: 639584
Number of successful extensions: 1625
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1625
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3119256630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)