Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_G04
(431 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q19877|RS23_CAEEL 40S ribosomal protein S23 246 1e-65
sp|P62267|RS23_MOUSE 40S ribosomal protein S23 >gi|54039461... 245 3e-65
sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 245 3e-65
sp|Q6SA96|RS23_PIG 40S ribosomal protein S23 244 6e-65
sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 243 1e-64
sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 242 3e-64
sp|P90707|RS23_BRUMA 40S ribosomal protein S23 241 6e-64
sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 >gi|52000789... 240 8e-64
sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 238 3e-63
sp|Q9DFR4|RS23_GILMI 40S ribosomal protein S23 232 2e-61
>sp|Q19877|RS23_CAEEL 40S ribosomal protein S23
Length = 143
Score = 246 bits (629), Expect = 1e-65
Identities = 117/132 (88%), Positives = 128/132 (96%)
Frame = +1
Query: 31 KLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 210
KL+ HR+++RW DK YKKAH+GTR+KSNPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVR
Sbjct: 12 KLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVR 71
Query: 211 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLL 390
VQLIKNGKKITAFVPNDGCLNF+EENDEVLVSGFGRSGHAVGDIPGVRFKIVKVAN SL+
Sbjct: 72 VQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLI 131
Query: 391 ALYKGKKERPRA 426
AL+KGKKERPR+
Sbjct: 132 ALFKGKKERPRS 143
>sp|P62267|RS23_MOUSE 40S ribosomal protein S23
sp|P62298|RS23_CHILA 40S ribosomal protein S23
sp|P62266|RS23_HUMAN 40S ribosomal protein S23
sp|P62268|RS23_RAT 40S ribosomal protein S23
Length = 143
Score = 245 bits (625), Expect = 3e-65
Identities = 118/132 (89%), Positives = 125/132 (94%)
Frame = +1
Query: 31 KLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 210
KLR HR+ ++W DK YKKAHLGT K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR
Sbjct: 12 KLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 71
Query: 211 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLL 390
VQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLL
Sbjct: 72 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLL 131
Query: 391 ALYKGKKERPRA 426
ALYKGKKERPR+
Sbjct: 132 ALYKGKKERPRS 143
>sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23
Length = 143
Score = 245 bits (625), Expect = 3e-65
Identities = 118/132 (89%), Positives = 126/132 (95%)
Frame = +1
Query: 31 KLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 210
KLR HR++++W DK YKKAHLGT K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR
Sbjct: 12 KLRDHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 71
Query: 211 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLL 390
VQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLL
Sbjct: 72 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLL 131
Query: 391 ALYKGKKERPRA 426
ALYKGKKERPR+
Sbjct: 132 ALYKGKKERPRS 143
>sp|Q6SA96|RS23_PIG 40S ribosomal protein S23
Length = 143
Score = 244 bits (623), Expect = 6e-65
Identities = 118/132 (89%), Positives = 124/132 (93%)
Frame = +1
Query: 31 KLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 210
KLR HR+ +W DK YKKAHLGT K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR
Sbjct: 12 KLRSHRRDHKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 71
Query: 211 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLL 390
VQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLL
Sbjct: 72 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLL 131
Query: 391 ALYKGKKERPRA 426
ALYKGKKERPR+
Sbjct: 132 ALYKGKKERPRS 143
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23
Length = 143
Score = 243 bits (620), Expect = 1e-64
Identities = 117/132 (88%), Positives = 127/132 (96%)
Frame = +1
Query: 31 KLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 210
KL+ HR+++RW DKDYKK+HLGTR+KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR
Sbjct: 12 KLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 71
Query: 211 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLL 390
VQLIKNGKKITAFVP DGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVA+VSLL
Sbjct: 72 VQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLL 131
Query: 391 ALYKGKKERPRA 426
ALYK KKERPR+
Sbjct: 132 ALYKQKKERPRS 143
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23
Length = 143
Score = 242 bits (617), Expect = 3e-64
Identities = 117/132 (88%), Positives = 125/132 (94%)
Frame = +1
Query: 31 KLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 210
K R HR+ +RW DKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR
Sbjct: 12 KHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 71
Query: 211 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLL 390
VQLIKNGKKITAFVP DGCLN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLL
Sbjct: 72 VQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLL 131
Query: 391 ALYKGKKERPRA 426
ALYK KKERPR+
Sbjct: 132 ALYKEKKERPRS 143
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23
Length = 143
Score = 241 bits (614), Expect = 6e-64
Identities = 116/132 (87%), Positives = 125/132 (94%)
Frame = +1
Query: 31 KLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 210
KL+ HR+ +RW DK YKKAHLGTR+K+NPFG ASHAKGIVLEKVGVEAKQPNSAIRKCVR
Sbjct: 12 KLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVR 71
Query: 211 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLL 390
VQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFKIVKVAN SL+
Sbjct: 72 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLI 131
Query: 391 ALYKGKKERPRA 426
AL+KGKKERPR+
Sbjct: 132 ALFKGKKERPRS 143
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23
sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23
Length = 143
Score = 240 bits (613), Expect = 8e-64
Identities = 114/128 (89%), Positives = 124/128 (96%)
Frame = +1
Query: 43 HRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 222
HR+++RWADKDYKKAH+GTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI
Sbjct: 16 HRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 75
Query: 223 KNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 402
KNGKK+TAFVP DGCLN IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135
Query: 403 GKKERPRA 426
KKERPR+
Sbjct: 136 EKKERPRS 143
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23
Length = 143
Score = 238 bits (608), Expect = 3e-63
Identities = 115/128 (89%), Positives = 123/128 (96%)
Frame = +1
Query: 43 HRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 222
HR+ +RWADKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI
Sbjct: 16 HRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 75
Query: 223 KNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 402
KNGKKITAFVP DG LN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76 KNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135
Query: 403 GKKERPRA 426
KKERPR+
Sbjct: 136 EKKERPRS 143
>sp|Q9DFR4|RS23_GILMI 40S ribosomal protein S23
Length = 143
Score = 232 bits (592), Expect = 2e-61
Identities = 111/132 (84%), Positives = 122/132 (92%)
Frame = +1
Query: 31 KLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 210
KLR HR++++W DK YKKAHLGT K+NPFG ASHAKGIVLEKVGVEAKQPNSAIRKCVR
Sbjct: 12 KLRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAKQPNSAIRKCVR 71
Query: 211 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLL 390
VQLIKNGKKITAFVPNDGCLNF EENDEVLV+GFGR HAVGDIPGVRFK+V++ANVSLL
Sbjct: 72 VQLIKNGKKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEMANVSLL 131
Query: 391 ALYKGKKERPRA 426
ALYKG KERP++
Sbjct: 132 ALYKGXKERPKS 143
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,322,492
Number of Sequences: 369166
Number of extensions: 899521
Number of successful extensions: 3153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2921
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)