Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_G02
(505 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19351|TNNT_DROME Troponin T, skeletal muscle (Upheld pr... 33 0.38
sp|Q9XZ71|TNNT_PERAM Troponin T (TnT) 33 0.50
sp|Q27371|TNNT_CAEEL Troponin T 31 1.5
sp|Q18179|YXX5_CAEEL Putative neuropeptide Y receptor (NPY-R) 31 1.5
sp|Q6YRD0|Y085_ONYPE Hypothetical UPF0176 protein PAM085 31 1.9
sp|P35826|SLAP_BACTI S-layer protein precursor (Surface lay... 31 1.9
sp|P17892|LIPR2_MOUSE Pancreatic lipase-related protein 2 p... 31 1.9
sp|P02719|SCNA_ELEEL Sodium channel protein (Na(+) channel) 30 2.5
sp|Q12923|PTN13_HUMAN Tyrosine-protein phosphatase, non-rec... 30 4.3
sp|Q64512|PTN13_MOUSE Tyrosine-protein phosphatase, non-rec... 30 4.3
>sp|P19351|TNNT_DROME Troponin T, skeletal muscle (Upheld protein) (Intended thorax
protein)
Length = 397
Score = 33.1 bits (74), Expect = 0.38
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 15/85 (17%)
Frame = +1
Query: 94 PPKVVMYSQYERVKDPRSFRDRSTVFDG---------------PLYSDYFTKIEPRFKVH 228
PPK+ + S+YER D RS+ D+ +F+G Y + + +
Sbjct: 259 PPKIQVASKYERRVDTRSYDDKKKLFEGGWDEISKDSNEKIWNEKKEQYTGRQKSKLPKW 318
Query: 229 MGEQGGEVVTENDAHHGSEAPAANE 303
GE+ G+ E + G E A+E
Sbjct: 319 FGERPGKKAGEPETPEGEEDAKADE 343
>sp|Q9XZ71|TNNT_PERAM Troponin T (TnT)
Length = 384
Score = 32.7 bits (73), Expect = 0.50
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 94 PPKVVMYSQYERVKDPRSFRDRSTVFDG 177
PPK+ + S+YER D RS+ D+ +F+G
Sbjct: 256 PPKIQVASKYERRVDTRSYDDKKKLFEG 283
>sp|Q27371|TNNT_CAEEL Troponin T
Length = 405
Score = 31.2 bits (69), Expect = 1.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 94 PPKVVMYSQYERVKDPRSFRDRSTVFDGP 180
PPK+ S+++R D RS+ DR +F+ P
Sbjct: 295 PPKITTASKFDRQTDRRSYGDRRYLFENP 323
>sp|Q18179|YXX5_CAEEL Putative neuropeptide Y receptor (NPY-R)
Length = 455
Score = 31.2 bits (69), Expect = 1.5
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Frame = -2
Query: 360 IFDIISIFEIRDKLSFSRYFIC------SWCFTPMMCIIFRDNFSTLFSHMNFKPRLNFC 199
+F I + FE+ + S + + IC S C P++ F NF F H+ + L
Sbjct: 289 VFHIFNTFELVNSFSVTTFSICHCLAMCSACLNPLIYAFFNHNFRIEFMHLFDRVGLRSL 348
Query: 198 KVI 190
+V+
Sbjct: 349 RVV 351
>sp|Q6YRD0|Y085_ONYPE Hypothetical UPF0176 protein PAM085
Length = 321
Score = 30.8 bits (68), Expect = 1.9
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 76 TKMSRAPPKVVMYSQYERVKDPRSFRDR 159
T+ S + V++Y QY +KDP++FRD+
Sbjct: 15 TQTSNSQYLVILYYQYAPIKDPQTFRDQ 42
>sp|P35826|SLAP_BACTI S-layer protein precursor (Surface layer protein)
Length = 393
Score = 30.8 bits (68), Expect = 1.9
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Frame = -2
Query: 423 FLSINMHYRKIGKVITIYRTQIFDIIS--IFEIRDKLSFSRY---FICSWCFTPMMCIIF 259
F+++ +HY T+Y T+I +S + ++ D+L+ + FI S CF IF
Sbjct: 269 FIALFIHYLPF----TVYLTEILIHLSWIVTDLDDELAVGFWTDCFISSCCFYCWNLFIF 324
Query: 258 RDNFSTLFSHMNFKPRLNFCKV--I*IQRSVKYCRSVSKTSWIFHSFILAIHHYFWWSA* 85
+ F+ L NFK F + + +Q+ + C SFI+ Y+++S
Sbjct: 325 DNVFNDLTILFNFKRERFFILIHNLLVQQFLYMCIFQMVHFKFSDSFIVCFSFYYFFSCF 384
Query: 84 HLSRQ 70
++R+
Sbjct: 385 VINRK 389
>sp|P17892|LIPR2_MOUSE Pancreatic lipase-related protein 2 precursor (Cytotoxic T
lymphocyte lipase)
Length = 468
Score = 30.8 bits (68), Expect = 1.9
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 110 CIANMKE*KI-QEVLETDLQYLTDLCIQITLQKLSLGLKFIWENKVEKLSRKMM 268
C AN K+ ++ + L+ + +Y+ D+ + + + ++ +KF+W NKV L R M
Sbjct: 381 CNANSKQYEVFKGSLQPEARYIRDIDVDVNVGEIQK-VKFLWNNKVINLFRPTM 433
>sp|P02719|SCNA_ELEEL Sodium channel protein (Na(+) channel)
Length = 1820
Score = 30.4 bits (67), Expect = 2.5
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -2
Query: 423 FLSINMHYRKIGKVITIYRTQIFDIISIFEIRDK---LSFSRYFICSWCFTPMMCI 265
F I + R++ KVI Y ++F + I E+ K F RYF +WC+ + +
Sbjct: 1019 FEDIYIWRRRVIKVILEYADKVFTYVFIVEMLLKWVAYGFKRYFTDAWCWLDFVIV 1074
>sp|Q12923|PTN13_HUMAN Tyrosine-protein phosphatase, non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1)
Length = 2485
Score = 29.6 bits (65), Expect = 4.3
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +2
Query: 188 QITLQKLSLGLKFIWENKVEKLSRKMMHIMGVKHQLQMKYRLK 316
+ITLQ S G+K ++ K+ + ++H+ +H+ Q++ R +
Sbjct: 832 KITLQNTSDGIKHGFQTDNSKICQYLLHLCSYQHKFQLQMRAR 874
>sp|Q64512|PTN13_MOUSE Tyrosine-protein phosphatase, non-receptor type 13 (Protein
tyrosine phosphatase PTP-BL) (Protein-tyrosine
phosphatase RIP) (protein tyrosine phosphatase DPZPTP)
(PTP36)
Length = 2453
Score = 29.6 bits (65), Expect = 4.3
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +2
Query: 188 QITLQKLSLGLKFIWENKVEKLSRKMMHIMGVKHQLQMKYRLK 316
+ITLQ S G+K ++ K + ++H+ +H+ Q++ R +
Sbjct: 825 KITLQNTSDGIKHAFQTDSSKACQYLLHLCSSQHKFQLQMRAR 867
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,334,223
Number of Sequences: 369166
Number of extensions: 1135612
Number of successful extensions: 2868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2868
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3218280650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)