Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_F20
(477 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6P2C8|CRSP8_HUMAN CRSP complex subunit 8 (Cofactor requ... 48 1e-05
sp|P56765|ACCD_ARATH Acetyl-coenzyme A carboxylase carboxyl... 32 0.75
sp|P76322|YEDM_ECOLI Hypothetical protein yedM 32 0.75
sp|P10686|PLCG1_RAT 1-phosphatidylinositol-4,5-bisphosphate... 31 1.7
sp|P08487|PLCG1_BOVIN 1-phosphatidylinositol-4,5-bisphospha... 31 1.7
sp|P34427|LIN36_CAEEL Abnormal cell lineage protein 36 (Pro... 30 2.2
sp|P49290|PERE_MOUSE Eosinophil peroxidase precursor (EPO) ... 29 4.9
sp|P37709|TRHY_RABIT Trichohyalin 29 4.9
sp|Q8HXG3|RHPN2_CANFA Rhophilin-2 (GTP-Rho binding protein ... 29 4.9
sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related... 29 6.4
>sp|Q6P2C8|CRSP8_HUMAN CRSP complex subunit 8 (Cofactor required for Sp1 transcriptional
activation subunit 8) (Transcriptional coactivator
CRSP34) (P37 TRAP/SMCC/PC2 subunit)
Length = 311
Score = 48.1 bits (113), Expect = 1e-05
Identities = 36/136 (26%), Positives = 61/136 (44%)
Frame = +2
Query: 44 ARILVKVDETLTCLLRFEGVDLSLVLVKGPMESFNENIACGPEQSADVKNKIDYFTPSKM 223
A +LV + + L ++ + + +VKG +NEN+ K+D ++ S
Sbjct: 188 AMLLVTLGKVLKVIVVMRSLFIDRTIVKG----YNENVYTED-------GKLDIWSKSNY 236
Query: 224 RLFREITNEAIVLLSSLRSNYFSPFDQHQKFFEWLRSFSNLHSQPCSVCNRILGKNHLPP 403
++F+++T+ A L + P + F WLRS+ L PC C + L ++ LPP
Sbjct: 237 QVFQKVTDHATTALLHYQLPQM-PDVVVRSFMTWLRSYIKLFQAPCQRCGKFL-QDGLPP 294
Query: 404 FRRDLADFCRVLHDNC 451
RD HD C
Sbjct: 295 TWRDFRTL-EAFHDTC 309
>sp|P56765|ACCD_ARATH Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
(ACCase beta chain)
Length = 488
Score = 32.0 bits (71), Expect = 0.75
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Frame = +2
Query: 176 SADVKNKIDYFTPSK-MRLFREITNEAIVLLSSLRSNYFSPFDQHQKFFEWLRSFSNLHS 352
S+ N +D SK +R F I+++ + S +++Y FD+ +K FE FS+L
Sbjct: 59 SSSYSNNVDLLVSSKDIRNF--ISDDTFFVRDSNKNSYSIFFDKKKKIFEIDNDFSDLEK 116
Query: 353 QPCSVC------NRILGKN--HLPPFRRDLADFCRVLHDNC 451
S C NR G N H P+ +D C ++C
Sbjct: 117 FFYSYCSSSYLNNRSKGDNDLHYDPYIKDTKYNCTNHINSC 157
>sp|P76322|YEDM_ECOLI Hypothetical protein yedM
Length = 116
Score = 32.0 bits (71), Expect = 0.75
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = +2
Query: 191 NKIDYFTPSKMRLFREITNEAIV------LLSSLRSNYFSPFDQHQKFFEWLRSFSNLHS 352
NK+ T S ++ ++++AI+ L+S L + F+P + K F L F LHS
Sbjct: 17 NKVTSNTESTIKQHELVSDDAIINELSSELVSCLGNGKFTPISEDSKLFNMLSEFKLLHS 76
Query: 353 Q 355
+
Sbjct: 77 E 77
>sp|P10686|PLCG1_RAT 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1
(Phosphoinositide phospholipase C) (PLC-gamma-1)
(Phospholipase C-gamma-1) (PLC-II) (PLC-148)
Length = 1290
Score = 30.8 bits (68), Expect = 1.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 266 SSLRSNYFSPFDQHQKFFEWLRSFSNLHSQPCSVCNRILGKNHLP 400
S++R F PFD+ LR +PC +C +LG HLP
Sbjct: 1067 STMRDEAFDPFDKSS-----LRGL-----EPCVICIEVLGARHLP 1101
>sp|P08487|PLCG1_BOVIN 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1
(Phosphoinositide phospholipase C) (PLC-gamma-1)
(Phospholipase C-gamma-1) (PLC-II) (PLC-148)
Length = 1291
Score = 30.8 bits (68), Expect = 1.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 266 SSLRSNYFSPFDQHQKFFEWLRSFSNLHSQPCSVCNRILGKNHLP 400
S +R F PFD+ LR +PC++C +LG HLP
Sbjct: 1067 SVMRDEAFDPFDKSS-----LRGL-----EPCAICIEVLGARHLP 1101
>sp|P34427|LIN36_CAEEL Abnormal cell lineage protein 36 (Protein lin-36)
Length = 962
Score = 30.4 bits (67), Expect = 2.2
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +2
Query: 317 FEWLRSFSNLHSQPCSVCNRIL--GKNHL 397
F+ +SNL +PC+VCNR++ G+ HL
Sbjct: 152 FKKFSPYSNLTHKPCTVCNRVMKSGEMHL 180
>sp|P49290|PERE_MOUSE Eosinophil peroxidase precursor (EPO) [Contains: Eosinophil
peroxidase light chain; Eosinophil peroxidase heavy
chain]
Length = 716
Score = 29.3 bits (64), Expect = 4.9
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Frame = +2
Query: 143 FNENIACGPEQSADVKNKIDY---FTPSKMRLFREITNEAIVLLSSLRSNYFSPFDQHQK 313
F AC P+ V+N+I+ F + M E+T + L R+N+ +Q+
Sbjct: 286 FRSAPAC-PQNRNKVRNQINALTSFVDASMVYGSEVT---LALRLRNRTNFLGLLATNQR 341
Query: 314 FFEWLRS---FSNLHSQPCSVCNR 376
F + R+ F NLH PC + NR
Sbjct: 342 FQDNGRALLPFDNLHEDPCLLTNR 365
>sp|P37709|TRHY_RABIT Trichohyalin
Length = 1407
Score = 29.3 bits (64), Expect = 4.9
Identities = 22/83 (26%), Positives = 38/83 (45%)
Frame = +1
Query: 145 QRKHRLRARAKRGCQK*NRLFHSEQNAIVQRNHERSNRFIVELAIELFLSVRSASEILRM 324
+++ R + R ++ ++ +R F E+ + +R ER R E +R ++LR
Sbjct: 1080 EQQRRRQEREQQLRRERDRKFREEEQLLQEREEERLRRQ------ERARKLREEEQLLRR 1133
Query: 325 AAQLLESPLAAVFRVQSNLGQES 393
QLL FR + L QES
Sbjct: 1134 EEQLLRQERDRKFREEEQLLQES 1156
>sp|Q8HXG3|RHPN2_CANFA Rhophilin-2 (GTP-Rho binding protein 2) (76 kDa RhoB effector
protein) (p76RBE)
Length = 686
Score = 29.3 bits (64), Expect = 4.9
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Frame = +2
Query: 101 VDLSLVLVKGPMESFNENIACGPEQSADVKN-KIDYFTPSKMRLFREITNEAIVLLSSLR 277
+D S+VL +E ++E+ ++ AD+ + + TPS+ E+ + L +
Sbjct: 123 IDFSVVLKDFILEHYSEDSYLYEDEIADLMDLRQACRTPSRDEAGVELLMSYFIQLGFVE 182
Query: 278 SNYFSPFDQHQKFFEWLRSFSNLHSQPCSVCNRILGK 388
S +F P Q F W + +L P S N +L K
Sbjct: 183 SRFFPPTRQMGILFTW---YDSLTGVPVSQQNLLLEK 216
>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 precursor
(Megalin) (Glycoprotein 330) (gp330)
Length = 4660
Score = 28.9 bits (63), Expect = 6.4
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 242 TNEAIVLLSSLRSNYFSPFDQHQKFFEWLRSFSNLHSQPCSVCNR 376
+N+A+V +S ++ Y FD ++F W+ + +H NR
Sbjct: 1768 SNDAMVPISGIQHGYDVEFDDSEQFIYWVENPGEIHRVKTDGSNR 1812
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,262,790
Number of Sequences: 369166
Number of extensions: 1096558
Number of successful extensions: 3922
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3922
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2832714465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)