Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_F16
(948 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y519|CV005_HUMAN Putative MAP kinase-activating protei... 67 7e-11
sp|Q8BG09|CV005_MOUSE Putative MAP kinase-activating protei... 67 7e-11
sp|P36142|YK31_YEAST Hypothetical UPF0206 protein YKR051w 49 3e-05
sp|Q09906|YAJ6_SCHPO Hypothetical UPF0206 protein C30D11.06... 45 4e-04
sp|P02845|VIT2_CHICK Vitellogenin II precursor (Major vitel... 37 0.11
sp|Q06628|ATG13_YEAST Autophagy-related protein 13 33 1.2
sp|Q02887|ATG21_YEAST Autophagy-related protein 21 (Maturat... 32 2.0
sp|P13773|CAR1_DICDI Cyclic AMP receptor 1 (cAMP receptor 1) 32 2.6
sp|P98193|DMP1_RAT Dentin matrix acidic phosphoprotein 1 pr... 32 2.6
sp|Q9URU2|DNA2_SCHPO DNA replication helicase dna2 32 3.4
>sp|Q9Y519|CV005_HUMAN Putative MAP kinase-activating protein C22orf5 (Putative
MAPK-activating protein FM08)
Length = 407
Score = 67.0 bits (162), Expect = 7e-11
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +1
Query: 43 PMSKFLCVKFVVFLSFWQSVVFAILTATKVISSVESWKLTDPK-EISSIFQNFFICIEMF 219
P+ KF VK V+FLSFWQ ++ AIL I + S +++ + +++ +Q+F IC+EMF
Sbjct: 245 PVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKIHSARVSVGEGTVAAGYQDFIICVEMF 304
Query: 220 IAAIAHHFSFTVAPYRDEESNSQPKC 297
AA+A +FT Y D+ ++Q +C
Sbjct: 305 FAALALRHAFTYKVYADKRLDAQGRC 330
>sp|Q8BG09|CV005_MOUSE Putative MAP kinase-activating protein C22orf5 homolog
Length = 407
Score = 67.0 bits (162), Expect = 7e-11
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +1
Query: 43 PMSKFLCVKFVVFLSFWQSVVFAILTATKVISSVESWKLTDPK-EISSIFQNFFICIEMF 219
P+ KF VK V+FLSFWQ ++ AIL I + S +++ + +++ +Q+F IC+EMF
Sbjct: 245 PVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKINSARVSVGEGTVAAGYQDFIICVEMF 304
Query: 220 IAAIAHHFSFTVAPYRDEESNSQPKC 297
AA+A +FT Y D+ ++Q +C
Sbjct: 305 FAALALRHAFTYKVYADKRLDAQGRC 330
>sp|P36142|YK31_YEAST Hypothetical UPF0206 protein YKR051w
Length = 418
Score = 48.5 bits (114), Expect = 3e-05
Identities = 24/70 (34%), Positives = 37/70 (52%)
Frame = +1
Query: 40 KPMSKFLCVKFVVFLSFWQSVVFAILTATKVISSVESWKLTDPKEISSIFQNFFICIEMF 219
KP KFLCVK ++F S+WQS++ L T + + + +++N +CIEM
Sbjct: 201 KPWLKFLCVKLIIFASYWQSIIIQGLVVTGKLGTG-----NQDRTSGYVYKNGLLCIEMV 255
Query: 220 IAAIAHHFSF 249
AI H +F
Sbjct: 256 PFAILHAVAF 265
>sp|Q09906|YAJ6_SCHPO Hypothetical UPF0206 protein C30D11.06c in chromosome I
Length = 426
Score = 44.7 bits (104), Expect = 4e-04
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +1
Query: 40 KPMSKFLCVKFVVFLSFWQSVVFAILTATKVISSVESWKLTDPKEISSIFQNFFICIEMF 219
+P KFL VK ++F S+WQ V +I +++ W S + QN +C+EM
Sbjct: 202 RPFPKFLSVKAIIFASYWQQTVLSITNWLGLLNGT-GW------IYSLLNQNVLMCLEMP 254
Query: 220 IAAIAHHFSFTVAPY 264
A++H ++F + Y
Sbjct: 255 FFALSHWYAFRIEDY 269
>sp|P02845|VIT2_CHICK Vitellogenin II precursor (Major vitellogenin) [Contains:
Lipovitellin I (LVI); Phosvitin (PV); Lipovitellin II
(LVII); YGP40]
Length = 1850
Score = 36.6 bits (83), Expect = 0.11
Identities = 29/111 (26%), Positives = 44/111 (39%)
Frame = +1
Query: 421 NPFRRQNEETPLITGGYHSDSDISRYSDTESRQNKSIRSEQSNERKVGQRQESIDSIGSG 600
N +R + + + S S S S + S +S S+ R + S S S
Sbjct: 1188 NSSKRSSSSSSSSSSSSRSSSSSSSSSSNSKSSSSSSKSSSSSSRSRSSSKSSSSSSSSS 1247
Query: 601 SSLTDLMVDDKIGSSTSKYLSVGSRSSLNNHLMTSHSSAVTLVPLKEGVHE 753
SS + + SS+SK S S S + HL S SS+ + + HE
Sbjct: 1248 SSSSSKSSSSRSSSSSSKSSSHHSHSHHSGHLNGSSSSSSSSRSVSHHSHE 1298
>sp|Q06628|ATG13_YEAST Autophagy-related protein 13
Length = 738
Score = 33.1 bits (74), Expect = 1.2
Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 4/157 (2%)
Frame = +1
Query: 370 GNTVKSKLPFNNNTGDINPFRRQNEETPLITGG----YHSDSDISRYSDTESRQNKSIRS 537
GN+ S L N+ D + ++ P I GG YH D+ I +Y+ ++
Sbjct: 568 GNSSTSALNSRRNSLDKSSNKQGMSGLPPIFGGESTSYHHDNKIQKYNQLGVEED----D 623
Query: 538 EQSNERKVGQRQESIDSIGSGSSLTDLMVDDKIGSSTSKYLSVGSRSSLNNHLMTSHSSA 717
+ N+R + Q +G+S +K+ S S S+++ S S
Sbjct: 624 DDENDRLLNQ----------------------MGNSATKFKSSISPRSIDS---ISSSFI 658
Query: 718 VTLVPLKEGVHESFETVVPFESSQELTDFNYPERNLV 828
+ +P+++ H S T PF++ + F+ P L+
Sbjct: 659 KSRIPIRQPYHYSQPTTAPFQAQAK---FHKPANKLI 692
>sp|Q02887|ATG21_YEAST Autophagy-related protein 21 (Maturation of proaminopeptidase I
protein 1) (Homologous with SVP1 protein 1) (Cytoplasm
to vacuole transport protein 21)
Length = 496
Score = 32.3 bits (72), Expect = 2.0
Identities = 21/77 (27%), Positives = 26/77 (33%)
Frame = +1
Query: 280 NSQPKCCYSCLAMCDVSDVKRDMLEHVKHVGNTVKSKLPFNNNTGDINPFRRQNEETPLI 459
N CC + +S D + K NNN N R NEE+ LI
Sbjct: 7 NQDATCCVVAASSHQISIFNCDPFGKCFEIDTKNSKKKTSNNNGSASNSESRNNEESILI 66
Query: 460 TGGYHSDSDISRYSDTE 510
T G +D D E
Sbjct: 67 TNGSRDRTDAEEEEDNE 83
>sp|P13773|CAR1_DICDI Cyclic AMP receptor 1 (cAMP receptor 1)
Length = 392
Score = 32.0 bits (71), Expect = 2.6
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Frame = +1
Query: 379 VKSKLPFNNNTGDINPFRRQNEETPLITGGYHSDSDISRYSDTE----SRQNKSIRSEQS 546
V+ KL N N + +P+ + GG+ + D+ SD E R + ++Q+
Sbjct: 285 VQKKLEKNKNNNNPSPYSSSRGTSGKTMGGHPTGDDVQCSSDMEQCSLERHPNMVNNQQN 344
Query: 547 NERKVGQRQESIDSIGSGSSLTDLMVDDKIGSSTSKYLSVGSRSSLNN 690
G +Q D S SSL+ + + + +S + NN
Sbjct: 345 LNNNYGLQQNYNDEGSSSSSLSSSDEEKQTVEMQNIQISTSTNGQGNN 392
>sp|P98193|DMP1_RAT Dentin matrix acidic phosphoprotein 1 precursor (Dentin matrix
protein 1) (DMP-1) (AG1)
Length = 489
Score = 32.0 bits (71), Expect = 2.6
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 10/139 (7%)
Frame = +1
Query: 442 EETPLITGGYHSDSDISRYSDTESRQNKSIRSEQSNERKVGQRQESIDSIGSGSSLTDL- 618
++TP + +HSD +D+ S + +S E +VG E S G GS D
Sbjct: 139 QDTPSDSKDHHSDE-----ADSRPEAGDSTQDSESEEYRVGGGSEGESSHGDGSEFDDEG 193
Query: 619 MVDDKIGSSTS-----KYLSVGSRS--SLNNHLMTSHSSAVTLVPLKEGVHESF--ETVV 771
M D GS+ S + S G RS S +H TS + ++ +SF V
Sbjct: 194 MQSDDPGSTRSDRGHTRMSSAGIRSEESKGDHEPTSTQDSDDSQDVEFSSRKSFRRSRVS 253
Query: 772 PFESSQELTDFNYPERNLV 828
+ EL D N E V
Sbjct: 254 EEDDRGELADSNSRETQSV 272
>sp|Q9URU2|DNA2_SCHPO DNA replication helicase dna2
Length = 1398
Score = 31.6 bits (70), Expect = 3.4
Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Frame = +1
Query: 328 SDVKRDMLEHVKHVGNTVKSKLPFNNNTGDINPFRRQNEETPLITGGYHSDSDISRYSDT 507
+++ + KH +K K FN ++ +PF + ++E IT D +R SD
Sbjct: 57 TEISSPKISEKKHSSLPIKRKNTFNESSTSFSPFTKAHKE---ITDDLKPDKSFTRKSDL 113
Query: 508 ESRQNKSIRSEQSNER--KVGQRQESIDSIGSGSSLTDL 618
S+ + +++++ + Q +D + S++ D+
Sbjct: 114 NSQDMPEVCFQETSKDLCRSSSTQHLLDHQTTDSTIIDM 152
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,558,724
Number of Sequences: 369166
Number of extensions: 1955708
Number of successful extensions: 5549
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5538
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9846996650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)